Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0004840

Physical Location & Seq

Genomic Coordinates Reverse (-)

6356513 .. 6363399

Gene Structure 6887 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g07542.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGTCGGTCTACCGGAAGTATGTCGGAGGCGGAGCCCGCCATGGCTGGAGCACGGTCTACGTGGTTGTTGCTTATGCTTGGCAAGATAAGATATACATCGTATCTACAAGTTTCCTGACTGGTCTATGGGCGGAGAAGCACGCTCTAAGAGAGTCACTCGATGGAGCAGGTTCTGAGTCCGACATTAGACGGACATTACACCTCTTCGCCATGGAGAGAATTAGTTTACCAGATAGTGGTGAATCTTATGCAGAGCATGATTACGAAGATGATGATCAGCTTGATTACTACTACTGTAGTCATGTGGAGTTGATTAACAATGACAGCCCTATCCCCTACAAAATATCGGCCAAATATAAATTGCCAGAAGTAATGGCCGAAACTTCTCAAGAGCCTGAGCTTAATACCGGAGAGATTATTGATACATATCCTATTTCAAAGGTTGATGGTTCTGACCAGGAGGAAGAAACATGTTTGCCAACTTATGGCGAACCCCAAACCGAGCACGATTATGAAGATAATATCCAACAAAGTTGCTCCAAGAAGGAAGTCGTTCCGCTCATGGATGACGATGTGTATGTTGATACCGGTCAGACGCATGGGGGGCTACACAAAGGCCTTTCTATCGATCTCGACCGCCATAAGCAATTCAATAACCAACTTTGTGGTTATCCTGTTAATGATCAAAGCTTGGGTCGATGTAATTATCAAATTGAAGCTACTGGACGTTGCCAAGAGGGAAGTCAAAACTATGGCAACCTACCCATACCACTCAGTGCAGTTCTCGTCGCCTCCGCAACAGTGGGATCTACCATTTTTCTCGTCGGACTATCACCCGCCACCGCTGAGCTATCACCCACCACCACCACCGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_2 Retrotran_gag_2 gag_pre-integrs rve zf-CCHC

Protein Analysis

292

Amino Acids

32.3

Weight (kDa)

4.52

Isoelectric Point (pI)

43.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004840)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g03870 FvH4_2g07542
rosa_chinensis	RchiOBHm_Chr5g0078211
rosa_multiflora	Rmu_sc0000777.1_g000012 Rmu_sc0002148.1_g000027 Rmu_sc0002538.1_g000027 Rmu_sc0002662.1_g000006 Rmu_sc0004277.1_g000060 Rmu_sc0004295.1_g000013 Rmu_sc0004607.1_g000001 Rmu_sc0006862.1_g000010 Rmu_sc0007315.1_g000010 Rmu_sc0007681.1_g000016 Rmu_sc0010265.1_g000010 Rmu_sc0024414.1_g000002 Rmu_sc0025517.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043280 Rroxscaffold_2G00103140 Rroxscaffold_2G00121790 Rroxscaffold_2G00123140 Rroxscaffold_3G00248480 Rroxscaffold_3G00267950 Rroxscaffold_5G00342740 Rroxscaffold_5G00374520 Rroxscaffold_6G00389230
rosa_rugosa	Rorug02G0190000 Rorug06G0080500 Rorug07G0304100
rosa_samantha	Rh4DG074400 Rh4DG074500
rosa_wichuraiana	Rw0G002790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	158
AccB7I	CCANNNNNTGG	2 cut(s)	236, 485
AccBSI	CCGCTC	1 cut(s)	559
AccI	GTMKAC	2 cut(s)	9, 57
AciI	CCGC	9 cut(s)	30, 37, 131, 557, 637, 795, 837, 843, 870
AclWI	GGATC	1 cut(s)	814
AcoI	YGGCCR	2 cut(s)	348, 375
AdeI	CACNNNGTG	1 cut(s)	776
AfiI	CCNNNNNNNGG	2 cut(s)	236, 485
AflIII	ACRYGT	1 cut(s)	470
AgeI	ACCGGT	1 cut(s)	587
AgsI	TTSAA	3 cut(s)	438, 652, 716
AjnI	CCWGG	1 cut(s)	456
AluBI	AGCT	5 cut(s)	280, 400, 690, 719, 850
AluI	AGCT	5 cut(s)	280, 400, 690, 719, 850
Alw21I	GWGCWC	2 cut(s)	53, 507
AlwI	GGATC	1 cut(s)	814
AlwNI	CAGNNNCTG	1 cut(s)	173
AoxI	GGCC	3 cut(s)	348, 375, 616
ArsI	GACNNNNNNTTYG	2 cut(s)	679, 711
AsiGI	ACCGGT	1 cut(s)	587
Asp700I	GAANNNNTTC	1 cut(s)	552
AsuHPI	GGTGA	3 cut(s)	251, 825, 846
BanII	GRGCYC	1 cut(s)	37
Bbv12I	GWGCWC	2 cut(s)	53, 507
BccI	CCATC	2 cut(s)	155, 440
BciT130I	CCWGG	1 cut(s)	458
BclI	TGATCA	2 cut(s)	274, 682
BfmI	CTRYAG	1 cut(s)	295
BfuAI	ACCTGC	1 cut(s)	158
BlpI	GCTNAGC	1 cut(s)	846
Bme1390I	CCNGG	1 cut(s)	458
BmiI	GGNNCC	1 cut(s)	34
BmrFI	CCNGG	1 cut(s)	458
BplI	GAGNNNNNCTC	2 cut(s)	141, 173
BpmI	CTGGAG	1 cut(s)	67
Bpu10I	CCTNAGC	1 cut(s)	396
Bpu1102I	GCTNAGC	1 cut(s)	846
BpuEI	CTTGAG	1 cut(s)	372
Bsa29I	ATCGAT	1 cut(s)	627
BsaAI	YACGTR	1 cut(s)	61
BsaBI	GATNNNNATC	3 cut(s)	95, 273, 426
BsaJI	CCNNGG	2 cut(s)	40, 210
BsaWI	WCCGGW	3 cut(s)	12, 407, 587
Bsc4I	CCNNNNNNNGG	2 cut(s)	236, 485
Bse118I	RCCGGY	1 cut(s)	587
Bse1I	ACTGG	2 cut(s)	124, 727
Bse8I	GATNNNNATC	3 cut(s)	95, 273, 426
BseBI	CCWGG	1 cut(s)	458
BseCI	ATCGAT	1 cut(s)	627
BseDI	CCNNGG	2 cut(s)	40, 210
BseGI	GGATG	1 cut(s)	571
BseJI	GATNNNNATC	3 cut(s)	95, 273, 426
BseLI	CCNNNNNNNGG	2 cut(s)	236, 485
BseMII	CTCAG	4 cut(s)	165, 387, 787, 837
BseNI	ACTGG	2 cut(s)	124, 727
BsgI	GTGCAG	1 cut(s)	798
Bsh1285I	CGRYCG	1 cut(s)	637
BshFI	GGCC	3 cut(s)	350, 377, 618
BshTI	ACCGGT	1 cut(s)	587
BshVI	ATCGAT	1 cut(s)	627
BsiEI	CGRYCG	1 cut(s)	637
BsiHKAI	GWGCWC	2 cut(s)	53, 507
BsiSI	CCGG	3 cut(s)	13, 408, 588
BslI	CCNNNNNNNGG	2 cut(s)	236, 485
BsnI	GGCC	3 cut(s)	350, 377, 618
Bsp1286I	GDGCHC	3 cut(s)	37, 53, 507
Bsp143I	GATC	4 cut(s)	274, 628, 682, 806
Bsp1720I	GCTNAGC	1 cut(s)	846
Bsp19I	CCATGG	2 cut(s)	40, 210
BspACI	CCGC	9 cut(s)	30, 37, 131, 557, 637, 795, 837, 843, 870
BspANI	GGCC	3 cut(s)	350, 377, 618
BspCNI	CTCAG	4 cut(s)	166, 388, 786, 838
BspDI	ATCGAT	1 cut(s)	627
BspLI	GGNNCC	1 cut(s)	34
BspMI	ACCTGC	1 cut(s)	158
BspPI	GGATC	1 cut(s)	814
BsrBI	CCGCTC	1 cut(s)	559
BsrFI	RCCGGY	1 cut(s)	587
BsrI	ACTGG	2 cut(s)	124, 727
BssAI	RCCGGY	1 cut(s)	587
BssECI	CCNNGG	2 cut(s)	40, 210
BssMI	GATC	4 cut(s)	274, 628, 682, 806
BssT1I	CCWWGG	2 cut(s)	40, 210
Bst2UI	CCWGG	1 cut(s)	458
Bst4CI	ACNGT	3 cut(s)	55, 296, 802
Bst6I	CTCTTC	1 cut(s)	209
BstBAI	YACGTR	1 cut(s)	61
BstC8I	GCNNGC	2 cut(s)	37, 141
BstDEI	CTNAG	5 cut(s)	146, 174, 396, 773, 846
BstDSI	CCRYGG	2 cut(s)	40, 210
BstF5I	GGATG	1 cut(s)	571
BstKTI	GATC	4 cut(s)	277, 631, 685, 809
BstMBI	GATC	4 cut(s)	274, 628, 682, 806
BstMCI	CGRYCG	1 cut(s)	637
BstMWI	GCNNNNNNNGC	2 cut(s)	36, 604
BstNI	CCWGG	1 cut(s)	458
BstNSI	RCATGY	1 cut(s)	474
BstSCI	CCNGG	1 cut(s)	456
BstSFI	CTRYAG	1 cut(s)	295
BstX2I	RGATCY	1 cut(s)	806
BstXI	CCANNNNNNTGG	1 cut(s)	665
BstYI	RGATCY	1 cut(s)	806
Bsu15I	ATCGAT	1 cut(s)	627
BsuRI	GGCC	3 cut(s)	350, 377, 618
BsuTUI	ATCGAT	1 cut(s)	627
BtgI	CCRYGG	2 cut(s)	40, 210
BtsCI	GGATG	1 cut(s)	571
BtsIMutI	CAGTG	2 cut(s)	781, 807
BveI	ACCTGC	1 cut(s)	158
Cac8I	GCNNGC	2 cut(s)	37, 141
CaiI	CAGNNNCTG	1 cut(s)	173
Cfr10I	RCCGGY	1 cut(s)	587
ClaI	ATCGAT	1 cut(s)	627
CseI	GACGC	1 cut(s)	604
CspAI	ACCGGT	1 cut(s)	587
CviAII	CATG	7 cut(s)	41, 211, 257, 302, 471, 562, 599
DdeI	CTNAG	5 cut(s)	146, 174, 396, 773, 846
DpnI	GATC	4 cut(s)	276, 630, 684, 808
DpnII	GATC	4 cut(s)	274, 628, 682, 806
DraIII	CACNNNGTG	1 cut(s)	776
EaeI	YGGCCR	2 cut(s)	348, 375
Eam1104I	CTCTTC	1 cut(s)	209
EarI	CTCTTC	1 cut(s)	209
EciI	GGCGGA	2 cut(s)	45, 146
Eco130I	CCWWGG	2 cut(s)	40, 210
Eco147I	AGGCCT	1 cut(s)	618
Eco24I	GRGCYC	1 cut(s)	37
EcoRII	CCWGG	1 cut(s)	456
EcoT14I	CCWWGG	2 cut(s)	40, 210
EcoT38I	GRGCYC	1 cut(s)	37
ErhI	CCWWGG	2 cut(s)	40, 210
FaeI	CATG	7 cut(s)	44, 214, 260, 305, 474, 565, 602
FatI	CATG	7 cut(s)	40, 210, 256, 301, 470, 561, 598
FauI	CCCGC	2 cut(s)	44, 844
FbaI	TGATCA	2 cut(s)	274, 682
FblI	GTMKAC	2 cut(s)	9, 57
FokI	GGATG	1 cut(s)	578
FriOI	GRGCYC	1 cut(s)	37
GsuI	CTGGAG	1 cut(s)	67
HaeIII	GGCC	3 cut(s)	350, 377, 618
HapII	CCGG	3 cut(s)	13, 408, 588
HgaI	GACGC	1 cut(s)	604
Hin1II	CATG	7 cut(s)	44, 214, 260, 305, 474, 565, 602
HindIII	AAGCTT	1 cut(s)	688
HinfI	GANTC	3 cut(s)	152, 176, 242
HpaII	CCGG	3 cut(s)	13, 408, 588
HphI	GGTGA	3 cut(s)	251, 825, 846
Hpy166II	GTNNAC	3 cut(s)	10, 58, 227
Hpy188I	TCNGA	6 cut(s)	26, 175, 181, 454, 594, 827
Hpy188III	TCNNGA	3 cut(s)	115, 389, 632
Hpy8I	GTNNAC	3 cut(s)	10, 58, 227
Hpy99I	CGWCG	2 cut(s)	791, 827
HpyAV	CCTTC	1 cut(s)	538
HpyCH4III	ACNGT	3 cut(s)	55, 296, 802
HpyCH4IV	ACGT	2 cut(s)	60, 727
HpyCH4V	TGCA	2 cut(s)	251, 779
HpyF10VI	GCNNNNNNNGC	2 cut(s)	36, 604
HpyF3I	CTNAG	5 cut(s)	146, 174, 396, 773, 846
HpySE526I	ACGT	2 cut(s)	60, 727
Hsp92II	CATG	7 cut(s)	44, 214, 260, 305, 474, 565, 602
Ksp22I	TGATCA	2 cut(s)	274, 682
Kzo9I	GATC	4 cut(s)	274, 628, 682, 806
LmnI	GCTCC	4 cut(s)	32, 48, 164, 542
MaeII	ACGT	2 cut(s)	60, 727
MaeIII	GTNAC	1 cut(s)	153
MalI	GATC	4 cut(s)	276, 630, 684, 808
MbiI	CCGCTC	1 cut(s)	559
MboI	GATC	4 cut(s)	274, 628, 682, 806
MboII	GAAGA	4 cut(s)	196, 278, 476, 527
MflI	RGATCY	1 cut(s)	806
MhlI	GDGCHC	3 cut(s)	37, 53, 507
MluCI	AATT	5 cut(s)	219, 359, 647, 703, 711
MlyI	GAGTC	2 cut(s)	161, 185
MmeI	TCCRAC	4 cut(s)	4, 204, 550, 805
MnlI	CCTC	5 cut(s)	20, 212, 454, 730, 802
MroXI	GAANNNNTTC	1 cut(s)	552
MseI	TTAA	3 cut(s)	315, 402, 678
MslI	CAYNNNNRTG	1 cut(s)	510
MspA1I	CMGCKG	1 cut(s)	845
MspI	CCGG	3 cut(s)	13, 408, 588
MspR9I	CCNGG	1 cut(s)	458
MvaI	CCWGG	1 cut(s)	458
MwoI	GCNNNNNNNGC	2 cut(s)	36, 604
NcoI	CCATGG	2 cut(s)	40, 210
NdeII	GATC	4 cut(s)	274, 628, 682, 806
NlaIII	CATG	7 cut(s)	44, 214, 260, 305, 474, 565, 602
NlaIV	GGNNCC	1 cut(s)	34
NmuCI	GTSAC	1 cut(s)	153
NspI	RCATGY	1 cut(s)	474
PceI	AGGCCT	1 cut(s)	618
PciI	ACATGT	1 cut(s)	470
PdmI	GAANNNNTTC	1 cut(s)	552
PfeI	GAWTC	1 cut(s)	242
PflMI	CCANNNNNTGG	2 cut(s)	236, 485
PinAI	ACCGGT	1 cut(s)	587
PleI	GAGTC	2 cut(s)	160, 184
PpsI	GAGTC	2 cut(s)	160, 184
Ppu21I	YACGTR	1 cut(s)	61
PscI	ACATGT	1 cut(s)	470
Psp6I	CCWGG	1 cut(s)	456
PspGI	CCWGG	1 cut(s)	456
PspN4I	GGNNCC	1 cut(s)	34
PstNI	CAGNNNCTG	1 cut(s)	173
PsuI	RGATCY	1 cut(s)	806
RseI	CAYNNNNRTG	1 cut(s)	510
SaqAI	TTAA	3 cut(s)	315, 402, 678
Sau3AI	GATC	4 cut(s)	274, 628, 682, 806
SchI	GAGTC	2 cut(s)	161, 185
ScrFI	CCNGG	1 cut(s)	458
SduI	GDGCHC	3 cut(s)	37, 53, 507
SfcI	CTRYAG	1 cut(s)	295
SmiMI	CAYNNNNRTG	1 cut(s)	510
SmlI	CTYRAG	1 cut(s)	387
SmoI	CTYRAG	1 cut(s)	387
Sse9I	AATT	5 cut(s)	219, 359, 647, 703, 711
SseBI	AGGCCT	1 cut(s)	618
SsiI	CCGC	9 cut(s)	30, 37, 131, 557, 637, 795, 837, 843, 870
StuI	AGGCCT	1 cut(s)	618
StyD4I	CCNGG	1 cut(s)	456
StyI	CCWWGG	2 cut(s)	40, 210
TaaI	ACNGT	3 cut(s)	55, 296, 802
TaiI	ACGT	2 cut(s)	63, 730
TaqI	TCGA	4 cut(s)	159, 627, 633, 697
TasI	AATT	5 cut(s)	219, 359, 647, 703, 711
TfiI	GAWTC	1 cut(s)	242
Tru1I	TTAA	3 cut(s)	315, 402, 678
Tru9I	TTAA	3 cut(s)	315, 402, 678
TscAI	CASTG	2 cut(s)	781, 807
TseFI	GTSAC	1 cut(s)	153
Tsp45I	GTSAC	1 cut(s)	153
TspDTI	ATGAA	1 cut(s)	528
TspGWI	ACGGA	1 cut(s)	205
TspRI	CASTG	2 cut(s)	781, 807
Van91I	CCANNNNNTGG	2 cut(s)	236, 485
XceI	RCATGY	1 cut(s)	474
XmiI	GTMKAC	2 cut(s)	9, 57
XmnI	GAANNNNTTC	1 cut(s)	552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.