Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0004840

Physical Location & Seq

Genomic Coordinates Forward (+)

41801639 .. 41804708

Gene Structure 3070 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00248480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGTGCACGGGTCGCTCTCGAAGGCTCCAAGGTAGGATTGTCCCGATTTTGTTCCGACAATTTTTAACTTCGGGGAAGCATTTAGGGGTCGTCAATGGGCCTGGCTGGATTGGGTTCGAAACTATGAACCCTTTTACCAAACAGAAAAAACCTAACCCAGAACCCATCCCCACCCGGCGAGTCATTCTTCTTCACTCTGAACTGCTGGATTTGTTTTGGGATTGCTCCAAAAGGGCCAAAAGCTTCTTGGAGATCATGGGAGGGTGGCCTCCCCACGAGGTACCGGCCGACCTCCACCATAGCAAGGTAGCTCGGGTGTCGGACTACCGGATGCATGCCATAGGAGGGGCTAACCATGTTGCGGGGCCCACCTATGAGGTCGTTGCTTATGCTTGGCGGTATGTGGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

136

Amino Acids

15.44

Weight (kDa)

9.94

Isoelectric Point (pI)

49.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004840)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g03870 FvH4_2g07542
rosa_chinensis	RchiOBHm_Chr5g0078211
rosa_multiflora	Rmu_sc0000777.1_g000012 Rmu_sc0002148.1_g000027 Rmu_sc0002538.1_g000027 Rmu_sc0002662.1_g000006 Rmu_sc0004277.1_g000060 Rmu_sc0004295.1_g000013 Rmu_sc0004607.1_g000001 Rmu_sc0006862.1_g000010 Rmu_sc0007315.1_g000010 Rmu_sc0007681.1_g000016 Rmu_sc0010265.1_g000010 Rmu_sc0024414.1_g000002 Rmu_sc0025517.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043280 Rroxscaffold_2G00103140 Rroxscaffold_2G00121790 Rroxscaffold_2G00123140 Rroxscaffold_3G00248480 Rroxscaffold_3G00267950 Rroxscaffold_5G00342740 Rroxscaffold_5G00374520 Rroxscaffold_6G00389230
rosa_rugosa	Rorug02G0190000 Rorug06G0080500 Rorug07G0304100
rosa_samantha	Rh4DG074400 Rh4DG074500
rosa_wichuraiana	Rw0G002790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	280
AccB1I	GGYRCC	1 cut(s)	280
AciI	CCGC	2 cut(s)	362, 397
AcoI	YGGCCR	1 cut(s)	285
AfaI	GTAC	1 cut(s)	282
AfiI	CCNNNNNNNGG	3 cut(s)	304, 345, 361
AjnI	CCWGG	1 cut(s)	100
AluBI	AGCT	2 cut(s)	243, 311
AluI	AGCT	2 cut(s)	243, 311
Alw21I	GWGCWC	1 cut(s)	8
Alw44I	GTGCAC	1 cut(s)	4
Ama87I	CYCGRG	1 cut(s)	312
AoxI	GGCC	5 cut(s)	98, 234, 266, 285, 365
ApaI	GGGCCC	1 cut(s)	369
ApaLI	GTGCAC	1 cut(s)	4
Asp718I	GGTACC	1 cut(s)	280
AspS9I	GGNCC	4 cut(s)	98, 234, 365, 366
AsuC2I	CCSGG	1 cut(s)	175
AsuII	TTCGAA	1 cut(s)	117
AvaI	CYCGRG	1 cut(s)	312
BaeGI	GKGCMC	2 cut(s)	8, 369
BanI	GGYRCC	1 cut(s)	280
BanII	GRGCYC	1 cut(s)	369
BauI	CACGAG	1 cut(s)	275
Bbv12I	GWGCWC	1 cut(s)	8
BccI	CCATC	1 cut(s)	173
BciT130I	CCWGG	1 cut(s)	102
BcnI	CCSGG	1 cut(s)	175
Bme1390I	CCNGG	2 cut(s)	102, 175
BmeT110I	CYCGRG	1 cut(s)	312
BmgT120I	GGNCC	4 cut(s)	98, 234, 365, 366
BmiI	GGNNCC	4 cut(s)	26, 282, 366, 367
BmrFI	CCNGG	2 cut(s)	102, 175
BmsI	GCATC	1 cut(s)	321
Bpu14I	TTCGAA	1 cut(s)	117
BpuMI	CCSGG	1 cut(s)	175
BsaJI	CCNNGG	1 cut(s)	28
BsaWI	WCCGGW	1 cut(s)	327
Bsc4I	CCNNNNNNNGG	3 cut(s)	304, 345, 361
Bse118I	RCCGGY	1 cut(s)	283
BseBI	CCWGG	1 cut(s)	102
BseDI	CCNNGG	1 cut(s)	28
BseGI	GGATG	2 cut(s)	165, 336
BseLI	CCNNNNNNNGG	3 cut(s)	304, 345, 361
BseSI	GKGCMC	2 cut(s)	8, 369
BseX3I	CGGCCG	1 cut(s)	285
Bsh1285I	CGRYCG	1 cut(s)	288
BshFI	GGCC	5 cut(s)	100, 236, 268, 287, 367
BshNI	GGYRCC	1 cut(s)	280
BsiEI	CGRYCG	1 cut(s)	288
BsiHKAI	GWGCWC	1 cut(s)	8
BsiHKCI	CYCGRG	1 cut(s)	312
BsiSI	CCGG	3 cut(s)	175, 284, 328
BslFI	GGGAC	1 cut(s)	26
BslI	CCNNNNNNNGG	3 cut(s)	304, 345, 361
BsmFI	GGGAC	1 cut(s)	26
BsnI	GGCC	5 cut(s)	100, 236, 268, 287, 367
BsoBI	CYCGRG	1 cut(s)	312
Bsp119I	TTCGAA	1 cut(s)	117
Bsp120I	GGGCCC	1 cut(s)	365
Bsp1286I	GDGCHC	2 cut(s)	8, 369
Bsp143I	GATC	1 cut(s)	252
BspACI	CCGC	2 cut(s)	362, 397
BspANI	GGCC	5 cut(s)	100, 236, 268, 287, 367
BspLI	GGNNCC	4 cut(s)	26, 282, 366, 367
BspT104I	TTCGAA	1 cut(s)	117
BspT107I	GGYRCC	1 cut(s)	280
BsrFI	RCCGGY	1 cut(s)	283
BssAI	RCCGGY	1 cut(s)	283
BssECI	CCNNGG	1 cut(s)	28
BssMI	GATC	1 cut(s)	252
BssSI	CACGAG	1 cut(s)	275
BssT1I	CCWWGG	1 cut(s)	28
Bst2BI	CACGAG	1 cut(s)	275
Bst2UI	CCWGG	1 cut(s)	102
BstBI	TTCGAA	1 cut(s)	117
BstC8I	GCNNGC	1 cut(s)	336
BstF5I	GGATG	2 cut(s)	165, 336
BstKTI	GATC	1 cut(s)	255
BstMBI	GATC	1 cut(s)	252
BstMCI	CGRYCG	1 cut(s)	288
BstMWI	GCNNNNNNNGC	1 cut(s)	12
BstNI	CCWGG	1 cut(s)	102
BstNSI	RCATGY	1 cut(s)	338
BstSCI	CCNGG	2 cut(s)	100, 173
BstSLI	GKGCMC	2 cut(s)	8, 369
BstZI	CGGCCG	1 cut(s)	285
BsuRI	GGCC	5 cut(s)	100, 236, 268, 287, 367
BtsCI	GGATG	2 cut(s)	165, 336
Cac8I	GCNNGC	1 cut(s)	336
Cfr10I	RCCGGY	1 cut(s)	283
Cfr13I	GGNCC	4 cut(s)	98, 234, 365, 366
Csp6I	GTAC	1 cut(s)	281
CviAII	CATG	3 cut(s)	256, 335, 356
CviQI	GTAC	1 cut(s)	281
DpnI	GATC	1 cut(s)	254
DpnII	GATC	1 cut(s)	252
EaeI	YGGCCR	1 cut(s)	285
EagI	CGGCCG	1 cut(s)	285
EclXI	CGGCCG	1 cut(s)	285
Eco130I	CCWWGG	1 cut(s)	28
Eco24I	GRGCYC	1 cut(s)	369
Eco52I	CGGCCG	1 cut(s)	285
Eco88I	CYCGRG	1 cut(s)	312
EcoO109I	RGGNCCY	1 cut(s)	365
EcoRII	CCWGG	1 cut(s)	100
EcoT14I	CCWWGG	1 cut(s)	28
EcoT22I	ATGCAT	1 cut(s)	336
EcoT38I	GRGCYC	1 cut(s)	369
ErhI	CCWWGG	1 cut(s)	28
FaeI	CATG	3 cut(s)	259, 338, 359
FaqI	GGGAC	1 cut(s)	26
FatI	CATG	3 cut(s)	255, 334, 355
FauI	CCCGC	1 cut(s)	355
FokI	GGATG	2 cut(s)	152, 343
FriOI	GRGCYC	1 cut(s)	369
HaeIII	GGCC	5 cut(s)	100, 236, 268, 287, 367
HapII	CCGG	3 cut(s)	175, 284, 328
Hin1II	CATG	3 cut(s)	259, 338, 359
HindIII	AAGCTT	1 cut(s)	241
HinfI	GANTC	1 cut(s)	180
HpaII	CCGG	3 cut(s)	175, 284, 328
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	3 cut(s)	56, 199, 322
Hpy188III	TCNNGA	2 cut(s)	18, 43
Hpy8I	GTNNAC	1 cut(s)	6
HpyAV	CCTTC	1 cut(s)	15
HpyCH4V	TGCA	2 cut(s)	6, 334
HpyF10VI	GCNNNNNNNGC	1 cut(s)	12
Hsp92II	CATG	3 cut(s)	259, 338, 359
KpnI	GGTACC	1 cut(s)	284
Kzo9I	GATC	1 cut(s)	252
LmnI	GCTCC	2 cut(s)	30, 230
LpnPI	CCDG	8 cut(s)	87, 91, 114, 171, 188, 191, 297, 341
LweI	GCATC	1 cut(s)	321
MalI	GATC	1 cut(s)	254
MboI	GATC	1 cut(s)	252
MboII	GAAGA	2 cut(s)	179, 182
MhlI	GDGCHC	2 cut(s)	8, 369
MluCI	AATT	1 cut(s)	59
MlyI	GAGTC	1 cut(s)	189
MmeI	TCCRAC	2 cut(s)	79, 300
MnlI	CCTC	6 cut(s)	254, 271, 279, 302, 338, 370
Mph1103I	ATGCAT	1 cut(s)	336
MseI	TTAA	1 cut(s)	65
MspI	CCGG	3 cut(s)	175, 284, 328
MspR9I	CCNGG	2 cut(s)	102, 175
MvaI	CCWGG	1 cut(s)	102
MwoI	GCNNNNNNNGC	1 cut(s)	12
NciI	CCSGG	1 cut(s)	175
NdeII	GATC	1 cut(s)	252
NlaIII	CATG	3 cut(s)	259, 338, 359
NlaIV	GGNNCC	4 cut(s)	26, 282, 366, 367
NsiI	ATGCAT	1 cut(s)	336
NspI	RCATGY	1 cut(s)	338
NspV	TTCGAA	1 cut(s)	117
PaeI	GCATGC	1 cut(s)	338
PleI	GAGTC	1 cut(s)	188
PpsI	GAGTC	1 cut(s)	188
Psp6I	CCWGG	1 cut(s)	100
PspGI	CCWGG	1 cut(s)	100
PspN4I	GGNNCC	4 cut(s)	26, 282, 366, 367
PspOMI	GGGCCC	1 cut(s)	365
PspPI	GGNCC	4 cut(s)	98, 234, 365, 366
RsaI	GTAC	1 cut(s)	282
RsaNI	GTAC	1 cut(s)	281
SaqAI	TTAA	1 cut(s)	65
Sau3AI	GATC	1 cut(s)	252
Sau96I	GGNCC	4 cut(s)	98, 234, 365, 366
SchI	GAGTC	1 cut(s)	189
ScrFI	CCNGG	2 cut(s)	102, 175
SduI	GDGCHC	2 cut(s)	8, 369
SetI	ASST	9 cut(s)	34, 154, 245, 282, 294, 309, 313, 374, 381
SfaNI	GCATC	1 cut(s)	321
SfuI	TTCGAA	1 cut(s)	117
SphI	GCATGC	1 cut(s)	338
Sse9I	AATT	1 cut(s)	59
SsiI	CCGC	2 cut(s)	362, 397
StyD4I	CCNGG	2 cut(s)	100, 173
StyI	CCWWGG	1 cut(s)	28
TaqI	TCGA	2 cut(s)	19, 117
TasI	AATT	1 cut(s)	59
Tru1I	TTAA	1 cut(s)	65
Tru9I	TTAA	1 cut(s)	65
TspDTI	ATGAA	1 cut(s)	140
VneI	GTGCAC	1 cut(s)	4
XceI	RCATGY	1 cut(s)	338
XcmI	CCANNNNNNNNNTGG	1 cut(s)	244
Zsp2I	ATGCAT	1 cut(s)	336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.