Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0025517.1

Orthogroup ID

OG0004840

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1778

Gene Structure 1778 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0025517.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 740 bp

atggatgaatcgtatgaaccttcaataactgatattggtttggtgtcccaaagtttgataaatggaagtgatggtaatgaaatgcaatataagggagttcggtttgataagttgtctatagaagatcttaaaggatcagttcaggatcatcatttagaattggccgcatctatgcagagattgtctgttaagctttgtcatacatatgaatatattgttgatagatcagggggttttaagaatgttgggtttattatgaaggacttgtacaacaagttagattcaagatgccgagaaattttactcgacggtgatgtagaagctgcacttgcatatacgagaggcaaagttgccatagactcgcatttctactgcaagtttagcatagatgaagataacaggttggcgaatatgttttggggagactctaattctctggtggattatacttgttttggagatgttttggtgtttgatagtacctataaaaccaatccctatgagaagccgaataaggttgtggaagagaattttaggtccaataactctagtcatgtccttacttcttcacttcgaaatttagaacatcatgcaggtactgtgttcagtgatagtgtgtttgagcatgtgcgtaacgagattgatggggtcggcgacttaataacatctctaactatggtgtctggttcaagtcgtgtatactttacatctagttacaatgacaacaagcaagagactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

246

Amino Acids

27.79

Weight (kDa)

4.92

Isoelectric Point (pI)

30.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004840)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g03870 FvH4_2g07542
rosa_chinensis	RchiOBHm_Chr5g0078211
rosa_multiflora	Rmu_sc0000777.1_g000012 Rmu_sc0002148.1_g000027 Rmu_sc0002538.1_g000027 Rmu_sc0002662.1_g000006 Rmu_sc0004277.1_g000060 Rmu_sc0004295.1_g000013 Rmu_sc0004607.1_g000001 Rmu_sc0006862.1_g000010 Rmu_sc0007315.1_g000010 Rmu_sc0007681.1_g000016 Rmu_sc0010265.1_g000010 Rmu_sc0024414.1_g000002 Rmu_sc0025517.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043280 Rroxscaffold_2G00103140 Rroxscaffold_2G00121790 Rroxscaffold_2G00123140 Rroxscaffold_3G00248480 Rroxscaffold_3G00267950 Rroxscaffold_5G00342740 Rroxscaffold_5G00374520 Rroxscaffold_6G00389230
rosa_rugosa	Rorug02G0190000 Rorug06G0080500 Rorug07G0304100
rosa_samantha	Rh4DG074400 Rh4DG074500
rosa_wichuraiana	Rw0G002790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	584
AccI	GTMKAC	1 cut(s)	699
AciI	CCGC	1 cut(s)	165
AclWI	GGATC	2 cut(s)	142, 153
AcoI	YGGCCR	1 cut(s)	162
AcsI	RAATTY	3 cut(s)	297, 529, 577
AfaI	GTAC	3 cut(s)	269, 481, 598
AgsI	TTSAA	3 cut(s)	24, 285, 690
AluBI	AGCT	2 cut(s)	193, 323
AluI	AGCT	2 cut(s)	193, 323
Alw26I	GTCTC	2 cut(s)	417, 728
AlwI	GGATC	2 cut(s)	142, 153
AlwNI	CAGNNNCTG	1 cut(s)	599
AoxI	GGCC	1 cut(s)	162
ApeKI	GCWGC	1 cut(s)	323
ApoI	RAATTY	3 cut(s)	297, 529, 577
AspS9I	GGNCC	1 cut(s)	537
AsuHPI	GGTGA	1 cut(s)	323
AsuII	TTCGAA	1 cut(s)	574
AvaII	GGWCC	1 cut(s)	537
BarI	GAAGNNNNNNTAC	2 cut(s)	251, 283
BbvI	GCAGC	1 cut(s)	310
BccI	CCATC	2 cut(s)	65, 638
BcoDI	GTCTC	2 cut(s)	417, 728
BfaI	CTAG	2 cut(s)	549, 711
BfmI	CTRYAG	1 cut(s)	117
BfuAI	ACCTGC	1 cut(s)	584
BglII	AGATCT	1 cut(s)	124
BisI	GCNGC	2 cut(s)	165, 324
BlsI	GCNGC	2 cut(s)	166, 325
Bme18I	GGWCC	1 cut(s)	537
BmgT120I	GGNCC	1 cut(s)	537
BmsI	GCATC	2 cut(s)	176, 278
Bpu14I	TTCGAA	1 cut(s)	574
BseGI	GGATG	1 cut(s)	10
BseXI	GCAGC	1 cut(s)	310
BsgI	GTGCAG	1 cut(s)	309
BshFI	GGCC	1 cut(s)	164
BslFI	GGGAC	1 cut(s)	31
BsmAI	GTCTC	2 cut(s)	417, 728
BsmFI	GGGAC	1 cut(s)	31
BsnI	GGCC	1 cut(s)	164
Bsp119I	TTCGAA	1 cut(s)	574
Bsp1407I	TGTACA	1 cut(s)	267
Bsp143I	GATC	4 cut(s)	124, 134, 145, 224
BspACI	CCGC	1 cut(s)	165
BspANI	GGCC	1 cut(s)	164
BspMI	ACCTGC	1 cut(s)	584
BspPI	GGATC	2 cut(s)	142, 153
BspT104I	TTCGAA	1 cut(s)	574
BsrGI	TGTACA	1 cut(s)	267
BssMI	GATC	4 cut(s)	124, 134, 145, 224
BssNAI	GTATAC	1 cut(s)	700
Bst1107I	GTATAC	1 cut(s)	700
Bst4CI	ACNGT	2 cut(s)	311, 601
Bst6I	CTCTTC	1 cut(s)	519
BstAUI	TGTACA	1 cut(s)	267
BstBI	TTCGAA	1 cut(s)	574
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	4 cut(s)	127, 137, 148, 227
BstMAI	GTCTC	2 cut(s)	417, 728
BstMBI	GATC	4 cut(s)	124, 134, 145, 224
BstMWI	GCNNNNNNNGC	2 cut(s)	329, 381
BstNSI	RCATGY	1 cut(s)	629
BstSFI	CTRYAG	1 cut(s)	117
BstV1I	GCAGC	1 cut(s)	310
BstX2I	RGATCY	1 cut(s)	124
BstYI	RGATCY	1 cut(s)	124
BstZ17I	GTATAC	1 cut(s)	700
BsuRI	GGCC	1 cut(s)	164
BtsCI	GGATG	1 cut(s)	10
BtsIMutI	CAGTG	1 cut(s)	613
BveI	ACCTGC	1 cut(s)	584
CaiI	CAGNNNCTG	1 cut(s)	599
Cfr13I	GGNCC	1 cut(s)	537
Csp6I	GTAC	3 cut(s)	268, 480, 597
CviAII	CATG	3 cut(s)	554, 590, 626
CviJI	RGCY	4 cut(s)	164, 193, 323, 508
CviKI_1	RGCY	4 cut(s)	164, 193, 323, 508
CviQI	GTAC	3 cut(s)	268, 480, 597
DpnI	GATC	4 cut(s)	126, 136, 147, 226
DpnII	GATC	4 cut(s)	124, 134, 145, 224
EaeI	YGGCCR	1 cut(s)	162
Eam1104I	CTCTTC	1 cut(s)	519
EarI	CTCTTC	1 cut(s)	519
Eco47I	GGWCC	1 cut(s)	537
FaeI	CATG	3 cut(s)	557, 593, 629
FalI	AAGNNNNNCTT	2 cut(s)	312, 344
FaqI	GGGAC	1 cut(s)	31
FatI	CATG	3 cut(s)	553, 589, 625
FauNDI	CATATG	1 cut(s)	205
FblI	GTMKAC	1 cut(s)	699
Fnu4HI	GCNGC	2 cut(s)	165, 324
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	2 cut(s)	165, 324
FspBI	CTAG	2 cut(s)	549, 711
GluI	GCNGC	2 cut(s)	165, 324
HaeIII	GGCC	1 cut(s)	164
Hin1II	CATG	3 cut(s)	557, 593, 629
HindIII	AAGCTT	1 cut(s)	191
HinfI	GANTC	4 cut(s)	8, 281, 359, 425
HphI	GGTGA	1 cut(s)	323
Hpy166II	GTNNAC	1 cut(s)	700
Hpy188III	TCNNGA	2 cut(s)	143, 285
Hpy8I	GTNNAC	1 cut(s)	700
Hpy99I	CGWCG	1 cut(s)	311
HpyAV	CCTTC	2 cut(s)	30, 253
HpyCH4III	ACNGT	2 cut(s)	311, 601
HpyCH4V	TGCA	6 cut(s)	85, 175, 326, 332, 375, 593
HpyF10VI	GCNNNNNNNGC	2 cut(s)	329, 381
Hsp92II	CATG	3 cut(s)	557, 593, 629
Kzo9I	GATC	4 cut(s)	124, 134, 145, 224
LpnPI	CCDG	6 cut(s)	128, 213, 385, 422, 579, 669
Lsp1109I	GCAGC	1 cut(s)	310
LweI	GCATC	2 cut(s)	176, 278
MaeI	CTAG	2 cut(s)	549, 711
MaeIII	GTNAC	2 cut(s)	632, 713
MalI	GATC	4 cut(s)	126, 136, 147, 226
MboI	GATC	4 cut(s)	124, 134, 145, 224
MboII	GAAGA	4 cut(s)	134, 404, 536, 558
MflI	RGATCY	1 cut(s)	124
MluCI	AATT	5 cut(s)	158, 297, 430, 529, 577
MlyI	GAGTC	2 cut(s)	353, 419
MnlI	CCTC	1 cut(s)	335
MseI	TTAA	4 cut(s)	129, 189, 237, 659
MslI	CAYNNNNRTG	1 cut(s)	204
MwoI	GCNNNNNNNGC	2 cut(s)	329, 381
NdeI	CATATG	1 cut(s)	205
NdeII	GATC	4 cut(s)	124, 134, 145, 224
NlaIII	CATG	3 cut(s)	557, 593, 629
NmeAIII	GCCGAG	1 cut(s)	317
NspI	RCATGY	1 cut(s)	629
NspV	TTCGAA	1 cut(s)	574
PfeI	GAWTC	2 cut(s)	8, 281
PkrI	GCNGC	2 cut(s)	166, 325
PleI	GAGTC	2 cut(s)	353, 419
PpsI	GAGTC	2 cut(s)	353, 419
PspPI	GGNCC	1 cut(s)	537
PstNI	CAGNNNCTG	1 cut(s)	599
PsuI	RGATCY	1 cut(s)	124
RsaI	GTAC	3 cut(s)	269, 481, 598
RsaNI	GTAC	3 cut(s)	268, 480, 597
RseI	CAYNNNNRTG	1 cut(s)	204
SaqAI	TTAA	4 cut(s)	129, 189, 237, 659
SatI	GCNGC	2 cut(s)	165, 324
Sau3AI	GATC	4 cut(s)	124, 134, 145, 224
Sau96I	GGNCC	1 cut(s)	537
SchI	GAGTC	2 cut(s)	353, 419
SetI	ASST	8 cut(s)	22, 195, 325, 404, 485, 519, 539, 598
SfaNI	GCATC	2 cut(s)	176, 278
SfcI	CTRYAG	1 cut(s)	117
SfuI	TTCGAA	1 cut(s)	574
SinI	GGWCC	1 cut(s)	537
SmiMI	CAYNNNNRTG	1 cut(s)	204
Sse9I	AATT	5 cut(s)	158, 297, 430, 529, 577
SsiI	CCGC	1 cut(s)	165
SspMI	CTAG	2 cut(s)	549, 711
TaaI	ACNGT	2 cut(s)	311, 601
TaqI	TCGA	2 cut(s)	306, 574
TasI	AATT	5 cut(s)	158, 297, 430, 529, 577
TatI	WGTACW	1 cut(s)	267
TauI	GCSGC	1 cut(s)	167
TfiI	GAWTC	2 cut(s)	8, 281
Tru1I	TTAA	4 cut(s)	129, 189, 237, 659
Tru9I	TTAA	4 cut(s)	129, 189, 237, 659
TscAI	CASTG	1 cut(s)	613
TseI	GCWGC	1 cut(s)	323
TspDTI	ATGAA	6 cut(s)	21, 30, 93, 222, 272, 405
TspRI	CASTG	1 cut(s)	613
VpaK11BI	GGWCC	1 cut(s)	537
XapI	RAATTY	3 cut(s)	297, 529, 577
XceI	RCATGY	1 cut(s)	629
XmiI	GTMKAC	1 cut(s)	699
XspI	CTAG	2 cut(s)	549, 711

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.