Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007315.1

Orthogroup ID

OG0004840

Physical Location & Seq

Genomic Coordinates Reverse (-)

54101 .. 55137

Gene Structure 1037 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007315.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

atgcctgctatcaactggccactaaaaacattagtgttgtctgattgtcagaaagtggatatctttgccgcagaattttcagtccttcagaaaacacatgacttggggaatctgcgtacgcgggttaaacaatatcctattctatttgagaagagttcattttccaaactggaagttttgaccttcggccccgtgaatatctggtacggtcgacctgcccatgagaaagctctttttcctgcgaccagtacagatgggtcccttccacatttgagaacgttgaggctacatggaatggagaagttaatgcgtctctgggagaacacagaacctgcagctggctcagcttttccaaagatggaaactcttgaggtgaagaactctggattgactaatctagagttgtctgcaatatccttccggaatctaacaattttagaagtaaccttttgctggcgattgcaatatttgaccacttattgggtagctcgaagtctcgtgcaactcaaaactttgaaagtgaattggtgcccgttcaaattgaagatttcctctgataaggtactagaagttgatggtgtccaaactgaatcgtggtcgcaaagcatgtctatgctggaacaggacaacagacgtttgcgggaagaattaagggccaaagaaggtaacagcctcccggagactccggttgttctcacttccaagagaactgctgatcttcctgtggaggtgatagcccagcttaatgctctgcttggaattgatcttccgtggacaagaagagctcttctaaccacatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

266

Amino Acids

30.33

Weight (kDa)

9.1

Isoelectric Point (pI)

44.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004840)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g03870 FvH4_2g07542
rosa_chinensis	RchiOBHm_Chr5g0078211
rosa_multiflora	Rmu_sc0000777.1_g000012 Rmu_sc0002148.1_g000027 Rmu_sc0002538.1_g000027 Rmu_sc0002662.1_g000006 Rmu_sc0004277.1_g000060 Rmu_sc0004295.1_g000013 Rmu_sc0004607.1_g000001 Rmu_sc0006862.1_g000010 Rmu_sc0007315.1_g000010 Rmu_sc0007681.1_g000016 Rmu_sc0010265.1_g000010 Rmu_sc0024414.1_g000002 Rmu_sc0025517.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043280 Rroxscaffold_2G00103140 Rroxscaffold_2G00121790 Rroxscaffold_2G00123140 Rroxscaffold_3G00248480 Rroxscaffold_3G00267950 Rroxscaffold_5G00342740 Rroxscaffold_5G00374520 Rroxscaffold_6G00389230
rosa_rugosa	Rorug02G0190000 Rorug06G0080500 Rorug07G0304100
rosa_samantha	Rh4DG074400 Rh4DG074500
rosa_wichuraiana	Rw0G002790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	223, 340
AccB1I	GGYRCC	1 cut(s)	528
AccB7I	CCANNNNNTGG	1 cut(s)	480
AccI	GTMKAC	1 cut(s)	211
AccII	CGCG	1 cut(s)	121
AccIII	TCCGGA	1 cut(s)	420
AciI	CCGC	3 cut(s)	69, 121, 640
AclI	AACGTT	1 cut(s)	278
AcoI	YGGCCR	1 cut(s)	17
AcsI	RAATTY	1 cut(s)	74
AcuI	CTGAAG	1 cut(s)	71
AfaI	GTAC	4 cut(s)	118, 206, 250, 564
AfiI	CCNNNNNNNGG	3 cut(s)	338, 453, 480
AgsI	TTSAA	3 cut(s)	517, 538, 544
AluBI	AGCT	6 cut(s)	230, 338, 347, 488, 742, 785
AluI	AGCT	6 cut(s)	230, 338, 347, 488, 742, 785
Alw21I	GWGCWC	1 cut(s)	787
Alw26I	GTCTC	3 cut(s)	317, 500, 674
AlwNI	CAGNNNCTG	1 cut(s)	332
Aor13HI	TCCGGA	1 cut(s)	420
AoxI	GGCC	3 cut(s)	17, 187, 654
ApeKI	GCWGC	1 cut(s)	335
ApoI	RAATTY	1 cut(s)	74
AspS9I	GGNCC	3 cut(s)	188, 258, 654
AsuC2I	CCSGG	1 cut(s)	677
AsuHPI	GGTGA	2 cut(s)	385, 742
AvaII	GGWCC	1 cut(s)	258
BaeGI	GKGCMC	1 cut(s)	533
BalI	TGGCCA	1 cut(s)	19
BanI	GGYRCC	1 cut(s)	528
BanII	GRGCYC	1 cut(s)	787
BauI	CACGAG	1 cut(s)	497
Bbv12I	GWGCWC	1 cut(s)	787
BbvI	GCAGC	1 cut(s)	347
BccI	CCATC	3 cut(s)	248, 352, 569
BcnI	CCSGG	1 cut(s)	677
BcoDI	GTCTC	3 cut(s)	317, 500, 674
BfaI	CTAG	2 cut(s)	398, 566
BfmI	CTRYAG	1 cut(s)	333
BfuAI	ACCTGC	2 cut(s)	223, 340
BisI	GCNGC	2 cut(s)	69, 336
BlpI	GCTNAGC	1 cut(s)	343
BlsI	GCNGC	2 cut(s)	70, 337
Bme1390I	CCNGG	1 cut(s)	677
Bme18I	GGWCC	1 cut(s)	258
BmgT120I	GGNCC	3 cut(s)	188, 258, 654
BmiI	GGNNCC	4 cut(s)	190, 259, 260, 530
BmrFI	CCNGG	1 cut(s)	677
Bpu1102I	GCTNAGC	1 cut(s)	343
BpuEI	CTTGAG	1 cut(s)	389
BpuMI	CCSGG	1 cut(s)	677
BsaJI	CCNNGG	1 cut(s)	770
BsaWI	WCCGGW	2 cut(s)	420, 685
Bsc4I	CCNNNNNNNGG	3 cut(s)	338, 453, 480
Bse1I	ACTGG	3 cut(s)	20, 174, 246
BseAI	TCCGGA	1 cut(s)	420
BseDI	CCNNGG	1 cut(s)	770
BseLI	CCNNNNNNNGG	3 cut(s)	338, 453, 480
BseMII	CTCAG	1 cut(s)	357
BseNI	ACTGG	3 cut(s)	20, 174, 246
BseSI	GKGCMC	1 cut(s)	533
BseXI	GCAGC	1 cut(s)	347
BseYI	CCCAGC	1 cut(s)	738
Bsh1236I	CGCG	1 cut(s)	121
Bsh1285I	CGRYCG	1 cut(s)	211
BshFI	GGCC	3 cut(s)	19, 189, 656
BshNI	GGYRCC	1 cut(s)	528
BsiEI	CGRYCG	1 cut(s)	211
BsiHKAI	GWGCWC	1 cut(s)	787
BsiSI	CCGG	3 cut(s)	421, 677, 686
BsiWI	CGTACG	1 cut(s)	116
BslFI	GGGAC	1 cut(s)	244
BslI	CCNNNNNNNGG	3 cut(s)	338, 453, 480
BsmAI	GTCTC	3 cut(s)	317, 500, 674
BsmBI	CGTCTC	1 cut(s)	317
BsmFI	GGGAC	1 cut(s)	244
BsnI	GGCC	3 cut(s)	19, 189, 656
Bsp1286I	GDGCHC	2 cut(s)	533, 787
Bsp13I	TCCGGA	1 cut(s)	420
Bsp143I	GATC	2 cut(s)	715, 763
Bsp1720I	GCTNAGC	1 cut(s)	343
BspACI	CCGC	3 cut(s)	69, 121, 640
BspANI	GGCC	3 cut(s)	19, 189, 656
BspCNI	CTCAG	1 cut(s)	356
BspEI	TCCGGA	1 cut(s)	420
BspFNI	CGCG	1 cut(s)	121
BspLI	GGNNCC	4 cut(s)	190, 259, 260, 530
BspMAI	CTGCAG	1 cut(s)	337
BspMI	ACCTGC	2 cut(s)	223, 340
BspQI	GCTCTTC	2 cut(s)	775, 792
BspT107I	GGYRCC	1 cut(s)	528
BsrI	ACTGG	3 cut(s)	20, 174, 246
BssECI	CCNNGG	1 cut(s)	770
BssMI	GATC	2 cut(s)	715, 763
BssSI	CACGAG	1 cut(s)	497
Bst2BI	CACGAG	1 cut(s)	497
Bst4CI	ACNGT	1 cut(s)	209
Bst6I	CTCTTC	3 cut(s)	146, 775, 792
BstC8I	GCNNGC	3 cut(s)	6, 340, 455
BstDEI	CTNAG	1 cut(s)	343
BstDSI	CCRYGG	1 cut(s)	770
BstFNI	CGCG	1 cut(s)	121
BstKTI	GATC	2 cut(s)	718, 766
BstMAI	GTCTC	3 cut(s)	317, 500, 674
BstMBI	GATC	2 cut(s)	715, 763
BstMCI	CGRYCG	1 cut(s)	211
BstMWI	GCNNNNNNNGC	1 cut(s)	344
BstNSI	RCATGY	1 cut(s)	610
BstSCI	CCNGG	1 cut(s)	675
BstSFI	CTRYAG	1 cut(s)	333
BstSLI	GKGCMC	1 cut(s)	533
BstUI	CGCG	1 cut(s)	121
BstV1I	GCAGC	1 cut(s)	347
BsuRI	GGCC	3 cut(s)	19, 189, 656
BtgI	CCRYGG	1 cut(s)	770
BveI	ACCTGC	2 cut(s)	223, 340
Cac8I	GCNNGC	3 cut(s)	6, 340, 455
CaiI	CAGNNNCTG	1 cut(s)	332
Cfr13I	GGNCC	3 cut(s)	188, 258, 654
CseI	GACGC	1 cut(s)	299
Csp6I	GTAC	4 cut(s)	117, 205, 249, 563
CviAII	CATG	4 cut(s)	98, 221, 290, 607
CviQI	GTAC	4 cut(s)	117, 205, 249, 563
DdeI	CTNAG	1 cut(s)	343
DpnI	GATC	2 cut(s)	717, 765
DpnII	GATC	2 cut(s)	715, 763
EaeI	YGGCCR	1 cut(s)	17
Eam1104I	CTCTTC	3 cut(s)	146, 775, 792
EarI	CTCTTC	3 cut(s)	146, 775, 792
Ecl136II	GAGCTC	1 cut(s)	785
Eco24I	GRGCYC	1 cut(s)	787
Eco32I	GATATC	1 cut(s)	61
Eco47I	GGWCC	1 cut(s)	258
Eco53kI	GAGCTC	1 cut(s)	785
Eco57I	CTGAAG	1 cut(s)	71
EcoICRI	GAGCTC	1 cut(s)	785
EcoO109I	RGGNCCY	1 cut(s)	258
EcoRV	GATATC	1 cut(s)	61
EcoT38I	GRGCYC	1 cut(s)	787
Esp3I	CGTCTC	1 cut(s)	317
FaeI	CATG	4 cut(s)	101, 224, 293, 610
FaiI	YATR	6 cut(s)	99, 222, 291, 608, 614, 799
FaqI	GGGAC	1 cut(s)	244
FatI	CATG	4 cut(s)	97, 220, 289, 606
FauI	CCCGC	2 cut(s)	114, 633
FblI	GTMKAC	1 cut(s)	211
Fnu4HI	GCNGC	2 cut(s)	69, 336
FriOI	GRGCYC	1 cut(s)	787
Fsp4HI	GCNGC	2 cut(s)	69, 336
FspBI	CTAG	2 cut(s)	398, 566
GluI	GCNGC	2 cut(s)	69, 336
GsaI	CCCAGC	1 cut(s)	742
HaeIII	GGCC	3 cut(s)	19, 189, 656
HapII	CCGG	3 cut(s)	421, 677, 686
HgaI	GACGC	1 cut(s)	299
Hin1II	CATG	4 cut(s)	101, 224, 293, 610
HincII	GTYRAC	1 cut(s)	212
HindII	GTYRAC	1 cut(s)	212
HinfI	GANTC	4 cut(s)	109, 424, 590, 682
HpaII	CCGG	3 cut(s)	421, 677, 686
HphI	GGTGA	2 cut(s)	385, 742
Hpy166II	GTNNAC	2 cut(s)	212, 774
Hpy188I	TCNGA	4 cut(s)	43, 51, 90, 556
Hpy188III	TCNNGA	4 cut(s)	368, 384, 398, 421
Hpy8I	GTNNAC	2 cut(s)	212, 774
HpyAV	CCTTC	5 cut(s)	95, 193, 272, 427, 656
HpyCH4III	ACNGT	1 cut(s)	209
HpyCH4IV	ACGT	2 cut(s)	278, 634
HpyCH4V	TGCA	4 cut(s)	335, 410, 463, 502
HpyF10VI	GCNNNNNNNGC	1 cut(s)	344
HpyF3I	CTNAG	1 cut(s)	343
HpySE526I	ACGT	2 cut(s)	278, 634
Hsp92II	CATG	4 cut(s)	101, 224, 293, 610
KflI	GGGWCCC	1 cut(s)	258
Kpn2I	TCCGGA	1 cut(s)	420
Kzo9I	GATC	2 cut(s)	715, 763
LguI	GCTCTTC	2 cut(s)	775, 792
Lsp1109I	GCAGC	1 cut(s)	347
MaeI	CTAG	2 cut(s)	398, 566
MaeII	ACGT	2 cut(s)	278, 634
MaeIII	GTNAC	2 cut(s)	442, 665
MalI	GATC	2 cut(s)	717, 765
MboI	GATC	2 cut(s)	715, 763
MboII	GAAGA	8 cut(s)	163, 388, 556, 656, 710, 758, 779, 792
MhlI	GDGCHC	2 cut(s)	533, 787
MlsI	TGGCCA	1 cut(s)	19
MluCI	AATT	6 cut(s)	74, 432, 523, 539, 647, 759
MluNI	TGGCCA	1 cut(s)	19
MlyI	GAGTC	1 cut(s)	676
MnlI	CCTC	5 cut(s)	276, 364, 562, 683, 721
Mox20I	TGGCCA	1 cut(s)	19
MroI	TCCGGA	1 cut(s)	420
MscI	TGGCCA	1 cut(s)	19
MseI	TTAA	4 cut(s)	126, 305, 650, 744
MslI	CAYNNNNRTG	1 cut(s)	611
Msp20I	TGGCCA	1 cut(s)	19
MspA1I	CMGCKG	1 cut(s)	338
MspI	CCGG	3 cut(s)	421, 677, 686
MspR9I	CCNGG	1 cut(s)	677
MvnI	CGCG	1 cut(s)	121
MwoI	GCNNNNNNNGC	1 cut(s)	344
NciI	CCSGG	1 cut(s)	677
NdeII	GATC	2 cut(s)	715, 763
NlaIII	CATG	4 cut(s)	101, 224, 293, 610
NlaIV	GGNNCC	4 cut(s)	190, 259, 260, 530
NspI	RCATGY	1 cut(s)	610
PciSI	GCTCTTC	2 cut(s)	775, 792
PfeI	GAWTC	3 cut(s)	109, 424, 590
Pfl23II	CGTACG	1 cut(s)	116
PflMI	CCANNNNNTGG	1 cut(s)	480
PfoI	TCCNGGA	1 cut(s)	675
PkrI	GCNGC	2 cut(s)	70, 337
PleI	GAGTC	1 cut(s)	676
PpsI	GAGTC	1 cut(s)	676
PpuMI	RGGWCCY	1 cut(s)	258
Psp124BI	GAGCTC	1 cut(s)	787
Psp1406I	AACGTT	1 cut(s)	278
Psp5II	RGGWCCY	1 cut(s)	258
PspFI	CCCAGC	1 cut(s)	738
PspLI	CGTACG	1 cut(s)	116
PspN4I	GGNNCC	4 cut(s)	190, 259, 260, 530
PspPI	GGNCC	3 cut(s)	188, 258, 654
PspPPI	RGGWCCY	1 cut(s)	258
PstI	CTGCAG	1 cut(s)	337
PstNI	CAGNNNCTG	1 cut(s)	332
PvuII	CAGCTG	1 cut(s)	338
RsaI	GTAC	4 cut(s)	118, 206, 250, 564
RsaNI	GTAC	4 cut(s)	117, 205, 249, 563
RseI	CAYNNNNRTG	1 cut(s)	611
SacI	GAGCTC	1 cut(s)	787
SalI	GTCGAC	1 cut(s)	210
SapI	GCTCTTC	2 cut(s)	775, 792
SaqAI	TTAA	4 cut(s)	126, 305, 650, 744
SatI	GCNGC	2 cut(s)	69, 336
Sau3AI	GATC	2 cut(s)	715, 763
Sau96I	GGNCC	3 cut(s)	188, 258, 654
SchI	GAGTC	1 cut(s)	676
ScrFI	CCNGG	1 cut(s)	677
SduI	GDGCHC	2 cut(s)	533, 787
SfcI	CTRYAG	1 cut(s)	333
SinI	GGWCC	1 cut(s)	258
SmiMI	CAYNNNNRTG	1 cut(s)	611
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
Sse9I	AATT	6 cut(s)	74, 432, 523, 539, 647, 759
SsiI	CCGC	3 cut(s)	69, 121, 640
SspI	AATATT	1 cut(s)	467
SspMI	CTAG	2 cut(s)	398, 566
SstI	GAGCTC	1 cut(s)	787
StyD4I	CCNGG	1 cut(s)	675
TaaI	ACNGT	1 cut(s)	209
TaiI	ACGT	2 cut(s)	281, 637
TaqI	TCGA	2 cut(s)	211, 490
TasI	AATT	6 cut(s)	74, 432, 523, 539, 647, 759
TatI	WGTACW	1 cut(s)	248
TauI	GCSGC	1 cut(s)	71
TfiI	GAWTC	3 cut(s)	109, 424, 590
Tru1I	TTAA	4 cut(s)	126, 305, 650, 744
Tru9I	TTAA	4 cut(s)	126, 305, 650, 744
TseI	GCWGC	1 cut(s)	335
TspDTI	ATGAA	1 cut(s)	147
TspGWI	ACGGA	1 cut(s)	759
Van91I	CCANNNNNTGG	1 cut(s)	480
VpaK11BI	GGWCC	1 cut(s)	258
XapI	RAATTY	1 cut(s)	74
XbaI	TCTAGA	1 cut(s)	397
XceI	RCATGY	1 cut(s)	610
XmiI	GTMKAC	1 cut(s)	211
XspI	CTAG	2 cut(s)	398, 566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.