Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006862.1

Orthogroup ID

OG0004840

Physical Location & Seq

Genomic Coordinates Forward (+)

42100 .. 48467

Gene Structure 6368 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006862.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

atgggagggaggcctcccggggagatacaggccgacctccaccatagagaggtagctcgggtgtcggtctaccagatgtatgttgtaggcgggactaaccatgtcgcggggcccacctatgaggtcgttgcttatgcttggcgggaaaaataccttcgtagtgccaatcttgttgatgactcttatgttgtccccaaggattgttccagtacatggagaagtattgttcatggggctaatcttcttaaacaaggcttgacctggagagttggagatggaagacgaaataatttctggttcgatatgtggctgcctcctttttcccttcagaatcatattcttccttctgcctcctttaatcctactgataaaatttctaacttttgggatgaccatggttgggacattgataaattaattgcttgtcttcctcaacatattatcgaccagattattcgtattcctcctggctttgatggatgtggagaagataaacaaatttgggggtatacatctaatggtatctttagtgtaaagtctgcttatgctatttttcttgcatcctattgtcaggataactctccatggaaattcatttggaaattgcagcttcctcccaaattgaagacattcacatggattgttttccatggcaaactcttaacaaatgttcaaagagccaaaaggaatttgaccaatgacaactgttgtcctttatgccatcaagctcttgagactcttgctcacctatttcgagattgccctgctgctcaattgatatggaattctttcaatataccatcttgcgtggctaatacttttcagataagttggaatggttggcttatggctcatcttctgtgcaagaccactctttttgtgttttctgatacttttcacggtatctctgaacagcagctgcatgtgacaaaatcaaatgatgagcagcaatgtaaggctcagtttgtgaaatcccagctgtgcaatttccatcagctttggagcaccgtgccggaggattcatcccattgtcatggcagagcaaccaccactccaggctctttgaatgtcatccggttcttcactttcccagtaccatcgatagacatcaaaatttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_3 zf-RVT

Protein Analysis

372

Amino Acids

42.47

Weight (kDa)

8.19

Isoelectric Point (pI)

39.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004840)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g03870 FvH4_2g07542
rosa_chinensis	RchiOBHm_Chr5g0078211
rosa_multiflora	Rmu_sc0000777.1_g000012 Rmu_sc0002148.1_g000027 Rmu_sc0002538.1_g000027 Rmu_sc0002662.1_g000006 Rmu_sc0004277.1_g000060 Rmu_sc0004295.1_g000013 Rmu_sc0004607.1_g000001 Rmu_sc0006862.1_g000010 Rmu_sc0007315.1_g000010 Rmu_sc0007681.1_g000016 Rmu_sc0010265.1_g000010 Rmu_sc0024414.1_g000002 Rmu_sc0025517.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043280 Rroxscaffold_2G00103140 Rroxscaffold_2G00121790 Rroxscaffold_2G00123140 Rroxscaffold_3G00248480 Rroxscaffold_3G00267950 Rroxscaffold_5G00342740 Rroxscaffold_5G00374520 Rroxscaffold_6G00389230
rosa_rugosa	Rorug02G0190000 Rorug06G0080500 Rorug07G0304100
rosa_samantha	Rh4DG074400 Rh4DG074500
rosa_wichuraiana	Rw0G002790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	213
AccI	GTMKAC	2 cut(s)	69, 509
AccII	CGCG	1 cut(s)	107
AciI	CCGC	3 cut(s)	90, 107, 142
AcsI	RAATTY	6 cut(s)	372, 498, 590, 688, 784, 1113
AcuI	CTGAAG	1 cut(s)	311
AfaI	GTAC	2 cut(s)	211, 1095
AfiI	CCNNNNNNNGG	4 cut(s)	49, 106, 213, 400
AgsI	TTSAA	4 cut(s)	625, 674, 793, 1066
AjnI	CCWGG	3 cut(s)	260, 466, 1054
AluBI	AGCT	6 cut(s)	56, 610, 728, 919, 979, 997
AluI	AGCT	6 cut(s)	56, 610, 728, 919, 979, 997
Alw21I	GWGCWC	1 cut(s)	1007
Alw26I	GTCTC	1 cut(s)	728
AlwNI	CAGNNNCTG	1 cut(s)	919
Ama87I	CYCGRG	2 cut(s)	17, 57
AoxI	GGCC	3 cut(s)	11, 30, 110
ApaI	GGGCCC	1 cut(s)	114
ApeKI	GCWGC	6 cut(s)	310, 607, 767, 916, 919, 946
ApoI	RAATTY	6 cut(s)	372, 498, 590, 688, 784, 1113
AseI	ATTAAT	1 cut(s)	416
Asp700I	GAANNNNTTC	2 cut(s)	629, 788
AspS9I	GGNCC	2 cut(s)	110, 111
AsuC2I	CCSGG	2 cut(s)	18, 19
AsuHPI	GGTGA	1 cut(s)	737
AvaI	CYCGRG	2 cut(s)	17, 57
BaeGI	GKGCMC	1 cut(s)	114
BanII	GRGCYC	1 cut(s)	114
BbsI	GAAGAC	3 cut(s)	286, 419, 632
Bbv12I	GWGCWC	1 cut(s)	1007
BbvI	GCAGC	6 cut(s)	297, 619, 754, 906, 928, 958
BccI	CCATC	6 cut(s)	269, 470, 729, 808, 999, 1105
BciT130I	CCWGG	3 cut(s)	262, 468, 1056
BcnI	CCSGG	2 cut(s)	18, 19
BcoDI	GTCTC	1 cut(s)	728
BisI	GCNGC	6 cut(s)	311, 608, 768, 917, 920, 947
BlsI	GCNGC	6 cut(s)	312, 609, 769, 918, 921, 948
Bme1390I	CCNGG	5 cut(s)	18, 19, 262, 468, 1056
BmeT110I	CYCGRG	2 cut(s)	17, 57
BmgT120I	GGNCC	2 cut(s)	110, 111
BmiI	GGNNCC	2 cut(s)	111, 112
BmrFI	CCNGG	5 cut(s)	18, 19, 262, 468, 1056
BmrI	ACTGGG	1 cut(s)	1085
BmsI	GCATC	1 cut(s)	569
BmuI	ACTGGG	1 cut(s)	1085
BpiI	GAAGAC	3 cut(s)	286, 419, 632
BpmI	CTGGAG	2 cut(s)	283, 1038
BpuEI	CTTGAG	1 cut(s)	752
BpuMI	CCSGG	2 cut(s)	18, 19
Bsa29I	ATCGAT	1 cut(s)	1100
BsaBI	GATNNNNATC	1 cut(s)	1106
BsaJI	CCNNGG	6 cut(s)	17, 18, 195, 394, 584, 649
BsaWI	WCCGGW	1 cut(s)	1074
BsaXI	ACNNNNNCTCC	2 cut(s)	1036, 1066
Bsc4I	CCNNNNNNNGG	4 cut(s)	49, 106, 213, 400
Bse1I	ACTGG	2 cut(s)	207, 1091
Bse3DI	GCAATG	1 cut(s)	956
Bse8I	GATNNNNATC	1 cut(s)	1106
BseBI	CCWGG	3 cut(s)	262, 468, 1056
BseCI	ATCGAT	1 cut(s)	1100
BseDI	CCNNGG	6 cut(s)	17, 18, 195, 394, 584, 649
BseGI	GGATG	5 cut(s)	394, 485, 560, 1022, 1071
BseJI	GATNNNNATC	1 cut(s)	1106
BseLI	CCNNNNNNNGG	4 cut(s)	49, 106, 213, 400
BseMI	GCAATG	1 cut(s)	956
BseMII	CTCAG	1 cut(s)	974
BseNI	ACTGG	2 cut(s)	207, 1091
BseSI	GKGCMC	1 cut(s)	114
BseXI	GCAGC	6 cut(s)	297, 619, 754, 906, 928, 958
BseYI	CCCAGC	1 cut(s)	975
Bsh1236I	CGCG	1 cut(s)	107
BshFI	GGCC	3 cut(s)	13, 32, 112
BshVI	ATCGAT	1 cut(s)	1100
BsiHKAI	GWGCWC	1 cut(s)	1007
BsiHKCI	CYCGRG	2 cut(s)	17, 57
BsiSI	CCGG	3 cut(s)	18, 1013, 1075
BslFI	GGGAC	3 cut(s)	106, 176, 416
BslI	CCNNNNNNNGG	4 cut(s)	49, 106, 213, 400
BsmAI	GTCTC	1 cut(s)	728
BsmFI	GGGAC	3 cut(s)	106, 176, 416
BsnI	GGCC	3 cut(s)	13, 32, 112
BsoBI	CYCGRG	2 cut(s)	17, 57
Bsp120I	GGGCCC	1 cut(s)	110
Bsp1286I	GDGCHC	2 cut(s)	114, 1007
Bsp19I	CCATGG	3 cut(s)	394, 584, 649
BspACI	CCGC	3 cut(s)	90, 107, 142
BspANI	GGCC	3 cut(s)	13, 32, 112
BspCNI	CTCAG	1 cut(s)	973
BspDI	ATCGAT	1 cut(s)	1100
BspFNI	CGCG	1 cut(s)	107
BspLI	GGNNCC	2 cut(s)	111, 112
BsrDI	GCAATG	1 cut(s)	956
BsrI	ACTGG	2 cut(s)	207, 1091
BssECI	CCNNGG	6 cut(s)	17, 18, 195, 394, 584, 649
BssNAI	GTATAC	1 cut(s)	510
BssT1I	CCWWGG	4 cut(s)	195, 394, 584, 649
Bst1107I	GTATAC	1 cut(s)	510
Bst2UI	CCWGG	3 cut(s)	262, 468, 1056
Bst4CI	ACNGT	3 cut(s)	707, 902, 1009
BstDEI	CTNAG	1 cut(s)	960
BstDSI	CCRYGG	3 cut(s)	394, 584, 649
BstF5I	GGATG	5 cut(s)	394, 485, 560, 1022, 1071
BstFNI	CGCG	1 cut(s)	107
BstMAI	GTCTC	1 cut(s)	728
BstNI	CCWGG	3 cut(s)	262, 468, 1056
BstNSI	RCATGY	1 cut(s)	926
BstSCI	CCNGG	5 cut(s)	16, 17, 260, 466, 1054
BstSLI	GKGCMC	1 cut(s)	114
BstUI	CGCG	1 cut(s)	107
BstV1I	GCAGC	6 cut(s)	297, 619, 754, 906, 928, 958
BstV2I	GAAGAC	3 cut(s)	286, 419, 632
BstXI	CCANNNNNNTGG	1 cut(s)	1034
BstZ17I	GTATAC	1 cut(s)	510
Bsu15I	ATCGAT	1 cut(s)	1100
BsuRI	GGCC	3 cut(s)	13, 32, 112
BsuTUI	ATCGAT	1 cut(s)	1100
BtgI	CCRYGG	3 cut(s)	394, 584, 649
BtsCI	GGATG	5 cut(s)	394, 485, 560, 1022, 1071
CaiI	CAGNNNCTG	1 cut(s)	919
Cfr13I	GGNCC	2 cut(s)	110, 111
Cfr9I	CCCGGG	1 cut(s)	17
ClaI	ATCGAT	1 cut(s)	1100
Csp6I	GTAC	2 cut(s)	210, 1094
CspCI	CAANNNNNGTGG	2 cut(s)	859, 894
CviAII	CATG	9 cut(s)	101, 213, 230, 395, 585, 636, 650, 923, 1034
CviQI	GTAC	2 cut(s)	210, 1094
DdeI	CTNAG	1 cut(s)	960
Eco130I	CCWWGG	4 cut(s)	195, 394, 584, 649
Eco147I	AGGCCT	1 cut(s)	13
Eco24I	GRGCYC	1 cut(s)	114
Eco57I	CTGAAG	1 cut(s)	311
Eco88I	CYCGRG	2 cut(s)	17, 57
EcoO109I	RGGNCCY	1 cut(s)	110
EcoRI	GAATTC	1 cut(s)	784
EcoRII	CCWGG	3 cut(s)	260, 466, 1054
EcoT14I	CCWWGG	4 cut(s)	195, 394, 584, 649
EcoT38I	GRGCYC	1 cut(s)	114
ErhI	CCWWGG	4 cut(s)	195, 394, 584, 649
FaeI	CATG	9 cut(s)	104, 216, 233, 398, 588, 639, 653, 926, 1037
FaqI	GGGAC	3 cut(s)	106, 176, 416
FatI	CATG	9 cut(s)	100, 212, 229, 394, 584, 635, 649, 922, 1033
FauI	CCCGC	3 cut(s)	83, 100, 135
FblI	GTMKAC	2 cut(s)	69, 509
Fnu4HI	GCNGC	6 cut(s)	311, 608, 768, 917, 920, 947
FokI	GGATG	5 cut(s)	401, 492, 547, 1009, 1058
FriOI	GRGCYC	1 cut(s)	114
Fsp4HI	GCNGC	6 cut(s)	311, 608, 768, 917, 920, 947
GluI	GCNGC	6 cut(s)	311, 608, 768, 917, 920, 947
GsaI	CCCAGC	1 cut(s)	979
GsuI	CTGGAG	2 cut(s)	283, 1038
HaeIII	GGCC	3 cut(s)	13, 32, 112
HapII	CCGG	3 cut(s)	18, 1013, 1075
Hin1II	CATG	9 cut(s)	104, 216, 233, 398, 588, 639, 653, 926, 1037
HinfI	GANTC	4 cut(s)	179, 331, 736, 1019
HpaII	CCGG	3 cut(s)	18, 1013, 1075
HphI	GGTGA	1 cut(s)	737
Hpy166II	GTNNAC	2 cut(s)	70, 510
Hpy188I	TCNGA	4 cut(s)	330, 825, 889, 910
Hpy188III	TCNNGA	3 cut(s)	572, 731, 755
Hpy8I	GTNNAC	2 cut(s)	70, 510
HpyAV	CCTTC	3 cut(s)	164, 335, 354
HpyCH4III	ACNGT	3 cut(s)	707, 902, 1009
HpyCH4V	TGCA	5 cut(s)	560, 607, 864, 922, 984
HpyF3I	CTNAG	1 cut(s)	960
Hsp92II	CATG	9 cut(s)	104, 216, 233, 398, 588, 639, 653, 926, 1037
LmnI	GCTCC	1 cut(s)	1002
Lsp1109I	GCAGC	6 cut(s)	297, 619, 754, 906, 928, 958
LweI	GCATC	1 cut(s)	569
MaeIII	GTNAC	1 cut(s)	925
MboII	GAAGA	8 cut(s)	233, 291, 332, 419, 500, 637, 848, 1072
MfeI	CAATTG	1 cut(s)	773
MhlI	GDGCHC	2 cut(s)	114, 1007
MlyI	GAGTC	2 cut(s)	173, 730
MmeI	TCCRAC	2 cut(s)	250, 812
MroXI	GAANNNNTTC	2 cut(s)	629, 788
MseI	TTAA	4 cut(s)	246, 357, 416, 662
MslI	CAYNNNNRTG	2 cut(s)	634, 1032
MspA1I	CMGCKG	2 cut(s)	919, 979
MspI	CCGG	3 cut(s)	18, 1013, 1075
MspR9I	CCNGG	5 cut(s)	18, 19, 262, 468, 1056
MunI	CAATTG	1 cut(s)	773
MvaI	CCWGG	3 cut(s)	262, 468, 1056
MvnI	CGCG	1 cut(s)	107
NciI	CCSGG	2 cut(s)	18, 19
NcoI	CCATGG	3 cut(s)	394, 584, 649
NlaIII	CATG	9 cut(s)	104, 216, 233, 398, 588, 639, 653, 926, 1037
NlaIV	GGNNCC	2 cut(s)	111, 112
NmuCI	GTSAC	1 cut(s)	925
NspI	RCATGY	1 cut(s)	926
PceI	AGGCCT	1 cut(s)	13
PdmI	GAANNNNTTC	2 cut(s)	629, 788
PfeI	GAWTC	2 cut(s)	331, 1019
PflMI	CCANNNNNTGG	1 cut(s)	213
PkrI	GCNGC	6 cut(s)	312, 609, 769, 918, 921, 948
PleI	GAGTC	2 cut(s)	173, 730
PpsI	GAGTC	2 cut(s)	173, 730
PshBI	ATTAAT	1 cut(s)	416
Psp6I	CCWGG	3 cut(s)	260, 466, 1054
PspFI	CCCAGC	1 cut(s)	975
PspGI	CCWGG	3 cut(s)	260, 466, 1054
PspN4I	GGNNCC	2 cut(s)	111, 112
PspOMI	GGGCCC	1 cut(s)	110
PspPI	GGNCC	2 cut(s)	110, 111
PstNI	CAGNNNCTG	1 cut(s)	919
PvuII	CAGCTG	2 cut(s)	919, 979
RsaI	GTAC	2 cut(s)	211, 1095
RsaNI	GTAC	2 cut(s)	210, 1094
RseI	CAYNNNNRTG	2 cut(s)	634, 1032
SaqAI	TTAA	4 cut(s)	246, 357, 416, 662
SatI	GCNGC	6 cut(s)	311, 608, 768, 917, 920, 947
Sau96I	GGNCC	2 cut(s)	110, 111
SchI	GAGTC	2 cut(s)	173, 730
ScrFI	CCNGG	5 cut(s)	18, 19, 262, 468, 1056
SduI	GDGCHC	2 cut(s)	114, 1007
SfaNI	GCATC	1 cut(s)	569
SmaI	CCCGGG	1 cut(s)	19
SmiMI	CAYNNNNRTG	2 cut(s)	634, 1032
SmlI	CTYRAG	1 cut(s)	731
SmoI	CTYRAG	1 cut(s)	731
SseBI	AGGCCT	1 cut(s)	13
SsiI	CCGC	3 cut(s)	90, 107, 142
StuI	AGGCCT	1 cut(s)	13
StyD4I	CCNGG	5 cut(s)	16, 17, 260, 466, 1054
StyI	CCWWGG	4 cut(s)	195, 394, 584, 649
TaaI	ACNGT	3 cut(s)	707, 902, 1009
TaqI	TCGA	4 cut(s)	300, 444, 754, 1100
TaqII	GACCGA	1 cut(s)	55
TatI	WGTACW	1 cut(s)	209
TfiI	GAWTC	2 cut(s)	331, 1019
Tru1I	TTAA	4 cut(s)	246, 357, 416, 662
Tru9I	TTAA	4 cut(s)	246, 357, 416, 662
TseFI	GTSAC	1 cut(s)	925
TseI	GCWGC	6 cut(s)	310, 607, 767, 916, 919, 946
Tsp45I	GTSAC	1 cut(s)	925
TspDTI	ATGAA	3 cut(s)	218, 583, 1011
TspMI	CCCGGG	1 cut(s)	17
Van91I	CCANNNNNTGG	1 cut(s)	213
VspI	ATTAAT	1 cut(s)	416
XapI	RAATTY	6 cut(s)	372, 498, 590, 688, 784, 1113
XceI	RCATGY	1 cut(s)	926
XmaI	CCCGGG	1 cut(s)	17
XmiI	GTMKAC	2 cut(s)	69, 509
XmnI	GAANNNNTTC	2 cut(s)	629, 788

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.