Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004840

Physical Location & Seq

Genomic Coordinates Forward (+)

56858221 .. 56867257

Gene Structure 9037 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00123140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGCGAGCGCATCGGGTTTTCACGGAGCTTTTTGGGAGATCTTTTTCGGTGACTTTCTTGGAGTTTTTCTCAAAGGTTATTGATCATTCTAGAAGATCTGATATCATAGATGACAAGGAGCGACAACGATTTTTGATGATTAATCCACAAAGTTTTGGGTGCATTGTGGCCTCTCTACCTATGTGTGGCCTCTTGGAGATCATGGGAGGGTGGCCTCCCCATGAGGTACCGGCCGACCTCCACCACGGCGAGGTAGCTCGGGTGTCGGACTACGGGATGCATGTGGTAGGCGGGACTAGCCATGTCGTGGGGCCCACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

106

Amino Acids

11.9

Weight (kDa)

6.35

Isoelectric Point (pI)

42.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004840)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g03870 FvH4_2g07542
rosa_chinensis	RchiOBHm_Chr5g0078211
rosa_multiflora	Rmu_sc0000777.1_g000012 Rmu_sc0002148.1_g000027 Rmu_sc0002538.1_g000027 Rmu_sc0002662.1_g000006 Rmu_sc0004277.1_g000060 Rmu_sc0004295.1_g000013 Rmu_sc0004607.1_g000001 Rmu_sc0006862.1_g000010 Rmu_sc0007315.1_g000010 Rmu_sc0007681.1_g000016 Rmu_sc0010265.1_g000010 Rmu_sc0024414.1_g000002 Rmu_sc0025517.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043280 Rroxscaffold_2G00103140 Rroxscaffold_2G00121790 Rroxscaffold_2G00123140 Rroxscaffold_3G00248480 Rroxscaffold_3G00267950 Rroxscaffold_5G00342740 Rroxscaffold_5G00374520 Rroxscaffold_6G00389230
rosa_rugosa	Rorug02G0190000 Rorug06G0080500 Rorug07G0304100
rosa_samantha	Rh4DG074400 Rh4DG074500
rosa_wichuraiana	Rw0G002790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	226
AccB1I	GGYRCC	1 cut(s)	226
AccB7I	CCANNNNNTGG	1 cut(s)	307
AciI	CCGC	1 cut(s)	291
AcoI	YGGCCR	1 cut(s)	231
AfaI	GTAC	1 cut(s)	228
AfiI	CCNNNNNNNGG	3 cut(s)	185, 250, 307
AluBI	AGCT	2 cut(s)	28, 257
AluI	AGCT	2 cut(s)	28, 257
Ama87I	CYCGRG	1 cut(s)	258
AoxI	GGCC	5 cut(s)	168, 187, 212, 231, 311
ApaI	GGGCCC	1 cut(s)	315
AseI	ATTAAT	1 cut(s)	141
Asp718I	GGTACC	1 cut(s)	226
AspLEI	GCGC	1 cut(s)	10
AspS9I	GGNCC	2 cut(s)	311, 312
AsuHPI	GGTGA	1 cut(s)	61
AvaI	CYCGRG	1 cut(s)	258
BaeGI	GKGCMC	1 cut(s)	315
BanI	GGYRCC	1 cut(s)	226
BanII	GRGCYC	1 cut(s)	315
BceAI	ACGGC	1 cut(s)	262
BclI	TGATCA	1 cut(s)	82
BfaI	CTAG	2 cut(s)	90, 297
BglII	AGATCT	2 cut(s)	38, 95
BmeT110I	CYCGRG	1 cut(s)	258
BmgT120I	GGNCC	2 cut(s)	311, 312
BmiI	GGNNCC	3 cut(s)	228, 312, 313
BmsI	GCATC	2 cut(s)	19, 267
BplI	GAGNNNNNCTC	2 cut(s)	53, 85
BsaJI	CCNNGG	1 cut(s)	244
Bsc4I	CCNNNNNNNGG	3 cut(s)	185, 250, 307
Bse118I	RCCGGY	1 cut(s)	229
BseDI	CCNNGG	1 cut(s)	244
BseGI	GGATG	1 cut(s)	282
BseLI	CCNNNNNNNGG	3 cut(s)	185, 250, 307
BseSI	GKGCMC	1 cut(s)	315
BseX3I	CGGCCG	1 cut(s)	231
Bsh1285I	CGRYCG	1 cut(s)	234
BshFI	GGCC	5 cut(s)	170, 189, 214, 233, 313
BshNI	GGYRCC	1 cut(s)	226
BsiEI	CGRYCG	1 cut(s)	234
BsiHKCI	CYCGRG	1 cut(s)	258
BsiSI	CCGG	1 cut(s)	230
BslFI	GGGAC	1 cut(s)	307
BslI	CCNNNNNNNGG	3 cut(s)	185, 250, 307
BsmFI	GGGAC	1 cut(s)	307
BsnI	GGCC	5 cut(s)	170, 189, 214, 233, 313
BsoBI	CYCGRG	1 cut(s)	258
Bsp120I	GGGCCC	1 cut(s)	311
Bsp1286I	GDGCHC	1 cut(s)	315
Bsp143I	GATC	4 cut(s)	38, 82, 95, 198
BspACI	CCGC	1 cut(s)	291
BspANI	GGCC	5 cut(s)	170, 189, 214, 233, 313
BspLI	GGNNCC	3 cut(s)	228, 312, 313
BspT107I	GGYRCC	1 cut(s)	226
BsrFI	RCCGGY	1 cut(s)	229
BssAI	RCCGGY	1 cut(s)	229
BssECI	CCNNGG	1 cut(s)	244
BssMI	GATC	4 cut(s)	38, 82, 95, 198
BstC8I	GCNNGC	1 cut(s)	6
BstDSI	CCRYGG	1 cut(s)	244
BstF5I	GGATG	1 cut(s)	282
BstHHI	GCGC	1 cut(s)	10
BstKTI	GATC	4 cut(s)	41, 85, 98, 201
BstMBI	GATC	4 cut(s)	38, 82, 95, 198
BstMCI	CGRYCG	1 cut(s)	234
BstMWI	GCNNNNNNNGC	1 cut(s)	297
BstNSI	RCATGY	1 cut(s)	284
BstSLI	GKGCMC	1 cut(s)	315
BstX2I	RGATCY	2 cut(s)	38, 95
BstYI	RGATCY	2 cut(s)	38, 95
BstZI	CGGCCG	1 cut(s)	231
BsuRI	GGCC	5 cut(s)	170, 189, 214, 233, 313
BtgI	CCRYGG	1 cut(s)	244
BtsCI	GGATG	1 cut(s)	282
Cac8I	GCNNGC	1 cut(s)	6
CfoI	GCGC	1 cut(s)	10
Cfr10I	RCCGGY	1 cut(s)	229
Cfr13I	GGNCC	2 cut(s)	311, 312
Csp6I	GTAC	1 cut(s)	227
CviAII	CATG	4 cut(s)	202, 221, 281, 302
CviJI	RGCY	8 cut(s)	28, 170, 189, 214, 233, 257, 300, 313
CviKI_1	RGCY	8 cut(s)	28, 170, 189, 214, 233, 257, 300, 313
CviQI	GTAC	1 cut(s)	227
DpnI	GATC	4 cut(s)	40, 84, 97, 200
DpnII	GATC	4 cut(s)	38, 82, 95, 198
EaeI	YGGCCR	1 cut(s)	231
EagI	CGGCCG	1 cut(s)	231
EclXI	CGGCCG	1 cut(s)	231
Eco24I	GRGCYC	1 cut(s)	315
Eco32I	GATATC	1 cut(s)	103
Eco52I	CGGCCG	1 cut(s)	231
Eco88I	CYCGRG	1 cut(s)	258
EcoO109I	RGGNCCY	1 cut(s)	311
EcoRV	GATATC	1 cut(s)	103
EcoT22I	ATGCAT	1 cut(s)	282
EcoT38I	GRGCYC	1 cut(s)	315
FaeI	CATG	4 cut(s)	205, 224, 284, 305
FaiI	YATR	6 cut(s)	107, 182, 203, 222, 282, 303
FaqI	GGGAC	1 cut(s)	307
FatI	CATG	4 cut(s)	201, 220, 280, 301
FauI	CCCGC	1 cut(s)	284
FbaI	TGATCA	1 cut(s)	82
FokI	GGATG	1 cut(s)	289
FriOI	GRGCYC	1 cut(s)	315
FspBI	CTAG	2 cut(s)	90, 297
GlaI	GCGC	1 cut(s)	9
HaeIII	GGCC	5 cut(s)	170, 189, 214, 233, 313
HapII	CCGG	1 cut(s)	230
HhaI	GCGC	1 cut(s)	10
Hin1II	CATG	4 cut(s)	205, 224, 284, 305
Hin6I	GCGC	1 cut(s)	8
HinP1I	GCGC	1 cut(s)	8
HpaII	CCGG	1 cut(s)	230
HphI	GGTGA	1 cut(s)	61
Hpy188I	TCNGA	2 cut(s)	100, 268
Hpy188III	TCNNGA	1 cut(s)	90
HpyCH4V	TGCA	2 cut(s)	162, 280
HpyF10VI	GCNNNNNNNGC	1 cut(s)	297
Hsp92II	CATG	4 cut(s)	205, 224, 284, 305
HspAI	GCGC	1 cut(s)	8
KpnI	GGTACC	1 cut(s)	230
Ksp22I	TGATCA	1 cut(s)	82
Kzo9I	GATC	4 cut(s)	38, 82, 95, 198
LmnI	GCTCC	2 cut(s)	25, 118
LpnPI	CCDG	1 cut(s)	243
LweI	GCATC	2 cut(s)	19, 267
MaeI	CTAG	2 cut(s)	90, 297
MaeIII	GTNAC	1 cut(s)	49
MalI	GATC	4 cut(s)	40, 84, 97, 200
MboI	GATC	4 cut(s)	38, 82, 95, 198
MboII	GAAGA	1 cut(s)	105
MflI	RGATCY	2 cut(s)	38, 95
MhlI	GDGCHC	1 cut(s)	315
MmeI	TCCRAC	1 cut(s)	246
MnlI	CCTC	7 cut(s)	181, 200, 200, 217, 225, 244, 248
Mph1103I	ATGCAT	1 cut(s)	282
MseI	TTAA	1 cut(s)	141
MspI	CCGG	1 cut(s)	230
MwoI	GCNNNNNNNGC	1 cut(s)	297
NdeII	GATC	4 cut(s)	38, 82, 95, 198
NlaIII	CATG	4 cut(s)	205, 224, 284, 305
NlaIV	GGNNCC	3 cut(s)	228, 312, 313
NmuCI	GTSAC	1 cut(s)	49
NsiI	ATGCAT	1 cut(s)	282
NspI	RCATGY	1 cut(s)	284
PflMI	CCANNNNNTGG	1 cut(s)	307
PshBI	ATTAAT	1 cut(s)	141
PspN4I	GGNNCC	3 cut(s)	228, 312, 313
PspOMI	GGGCCC	1 cut(s)	311
PspPI	GGNCC	2 cut(s)	311, 312
PsuI	RGATCY	2 cut(s)	38, 95
RsaI	GTAC	1 cut(s)	228
RsaNI	GTAC	1 cut(s)	227
SaqAI	TTAA	1 cut(s)	141
Sau3AI	GATC	4 cut(s)	38, 82, 95, 198
Sau96I	GGNCC	2 cut(s)	311, 312
SduI	GDGCHC	1 cut(s)	315
SetI	ASST	8 cut(s)	30, 78, 181, 228, 240, 255, 259, 320
SfaNI	GCATC	2 cut(s)	19, 267
SsiI	CCGC	1 cut(s)	291
SspMI	CTAG	2 cut(s)	90, 297
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TseFI	GTSAC	1 cut(s)	49
Tsp45I	GTSAC	1 cut(s)	49
TspGWI	ACGGA	1 cut(s)	38
Van91I	CCANNNNNTGG	1 cut(s)	307
VspI	ATTAAT	1 cut(s)	141
XbaI	TCTAGA	1 cut(s)	89
XceI	RCATGY	1 cut(s)	284
XspI	CTAG	2 cut(s)	90, 297
Zsp2I	ATGCAT	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.