Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004840

Physical Location & Seq

Genomic Coordinates Reverse (-)

61589610 .. 61608904

Gene Structure 19295 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00043280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGAAAGTTGATCACCCTTTAATTTTTGAACAACGCCTTGCTTCGCAGGTTGAAGCAAAAGACTTCGTGGTAAAGGTCAAGAACATGATGAAGCCTCCAGGGAGTGCATGGGTGCCGGTTACTCGGTTAGGGCCGGCCTTGAGATTTCCCAGGCTCGAGGCGAACAAAATGAATAGGGCTCCGACCTTCATCCTTTTGGAGAGCATGAGAGGGTGGCCTCCGGGCGAGATACCGGCCGACCTCCACCATAGCGAGGTAGCCACTTGTTCCAGTGCATGGAACGTCGCTTGCCAGGTTGCAAAATTGTGCAGGTTGACGAGCTTTATAAGTTTTCTTTTCGAGATTGTTTCTCACCCATTCGAGAAGAATTTCCAGTCTCCTTCTGAACGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

130

Amino Acids

14.72

Weight (kDa)

9.22

Isoelectric Point (pI)

43.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004840)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g03870 FvH4_2g07542
rosa_chinensis	RchiOBHm_Chr5g0078211
rosa_multiflora	Rmu_sc0000777.1_g000012 Rmu_sc0002148.1_g000027 Rmu_sc0002538.1_g000027 Rmu_sc0002662.1_g000006 Rmu_sc0004277.1_g000060 Rmu_sc0004295.1_g000013 Rmu_sc0004607.1_g000001 Rmu_sc0006862.1_g000010 Rmu_sc0007315.1_g000010 Rmu_sc0007681.1_g000016 Rmu_sc0010265.1_g000010 Rmu_sc0024414.1_g000002 Rmu_sc0025517.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043280 Rroxscaffold_2G00103140 Rroxscaffold_2G00121790 Rroxscaffold_2G00123140 Rroxscaffold_3G00248480 Rroxscaffold_3G00267950 Rroxscaffold_5G00342740 Rroxscaffold_5G00374520 Rroxscaffold_6G00389230
rosa_rugosa	Rorug02G0190000 Rorug06G0080500 Rorug07G0304100
rosa_samantha	Rh4DG074400 Rh4DG074500
rosa_wichuraiana	Rw0G002790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	326
Acc36I	ACCTGC	2 cut(s)	37, 300
AccB1I	GGYRCC	1 cut(s)	112
AccB7I	CCANNNNNTGG	1 cut(s)	276
AcoI	YGGCCR	1 cut(s)	234
AcsI	RAATTY	1 cut(s)	367
AfiI	CCNNNNNNNGG	2 cut(s)	253, 276
AgsI	TTSAA	2 cut(s)	29, 53
AjnI	CCWGG	3 cut(s)	97, 149, 291
AluBI	AGCT	1 cut(s)	321
AluI	AGCT	1 cut(s)	321
Alw26I	GTCTC	1 cut(s)	381
Ama87I	CYCGRG	1 cut(s)	155
AoxI	GGCC	4 cut(s)	131, 135, 215, 234
ApoI	RAATTY	1 cut(s)	367
Asp700I	GAANNNNTTC	1 cut(s)	368
AspS9I	GGNCC	1 cut(s)	131
AsuC2I	CCSGG	1 cut(s)	222
AsuHPI	GGTGA	2 cut(s)	5, 344
AvaI	CYCGRG	1 cut(s)	155
BanI	GGYRCC	1 cut(s)	112
BanII	GRGCYC	1 cut(s)	181
BciT130I	CCWGG	3 cut(s)	99, 151, 293
BclI	TGATCA	1 cut(s)	10
BcnI	CCSGG	1 cut(s)	222
BcoDI	GTCTC	1 cut(s)	381
BfuAI	ACCTGC	2 cut(s)	37, 300
Bme1390I	CCNGG	4 cut(s)	99, 151, 222, 293
BmeT110I	CYCGRG	1 cut(s)	155
BmgT120I	GGNCC	1 cut(s)	131
BmiI	GGNNCC	2 cut(s)	114, 180
BmrFI	CCNGG	4 cut(s)	99, 151, 222, 293
BpmI	CTGGAG	1 cut(s)	81
BpuEI	CTTGAG	1 cut(s)	160
BpuMI	CCSGG	1 cut(s)	222
BsaJI	CCNNGG	2 cut(s)	98, 149
Bsc4I	CCNNNNNNNGG	2 cut(s)	253, 276
Bse118I	RCCGGY	3 cut(s)	115, 133, 232
Bse1I	ACTGG	2 cut(s)	270, 373
BseBI	CCWGG	3 cut(s)	99, 151, 293
BseDI	CCNNGG	2 cut(s)	98, 149
BseGI	GGATG	1 cut(s)	189
BseLI	CCNNNNNNNGG	2 cut(s)	253, 276
BseNI	ACTGG	2 cut(s)	270, 373
BseX3I	CGGCCG	1 cut(s)	234
BsgI	GTGCAG	1 cut(s)	328
Bsh1285I	CGRYCG	1 cut(s)	237
BshFI	GGCC	4 cut(s)	133, 137, 217, 236
BshNI	GGYRCC	1 cut(s)	112
BsiEI	CGRYCG	1 cut(s)	237
BsiHKCI	CYCGRG	1 cut(s)	155
BsiSI	CCGG	4 cut(s)	116, 134, 221, 233
BslI	CCNNNNNNNGG	2 cut(s)	253, 276
BsmAI	GTCTC	1 cut(s)	381
BsnI	GGCC	4 cut(s)	133, 137, 217, 236
BsoBI	CYCGRG	1 cut(s)	155
Bsp1286I	GDGCHC	1 cut(s)	181
Bsp143I	GATC	1 cut(s)	10
BspANI	GGCC	4 cut(s)	133, 137, 217, 236
BspLI	GGNNCC	2 cut(s)	114, 180
BspMI	ACCTGC	2 cut(s)	37, 300
BspT107I	GGYRCC	1 cut(s)	112
BsrFI	RCCGGY	3 cut(s)	115, 133, 232
BsrI	ACTGG	2 cut(s)	270, 373
BssAI	RCCGGY	3 cut(s)	115, 133, 232
BssECI	CCNNGG	2 cut(s)	98, 149
BssMI	GATC	1 cut(s)	10
Bst2UI	CCWGG	3 cut(s)	99, 151, 293
BstC8I	GCNNGC	2 cut(s)	135, 289
BstF5I	GGATG	1 cut(s)	189
BstKTI	GATC	1 cut(s)	13
BstMAI	GTCTC	1 cut(s)	381
BstMBI	GATC	1 cut(s)	10
BstMCI	CGRYCG	1 cut(s)	237
BstNI	CCWGG	3 cut(s)	99, 151, 293
BstSCI	CCNGG	4 cut(s)	97, 149, 220, 291
BstZI	CGGCCG	1 cut(s)	234
BsuRI	GGCC	4 cut(s)	133, 137, 217, 236
BtsCI	GGATG	1 cut(s)	189
BtsIMutI	CAGTG	1 cut(s)	277
BveI	ACCTGC	2 cut(s)	37, 300
Cac8I	GCNNGC	2 cut(s)	135, 289
Cfr10I	RCCGGY	3 cut(s)	115, 133, 232
Cfr13I	GGNCC	1 cut(s)	131
CviAII	CATG	4 cut(s)	85, 108, 205, 276
CviJI	RGCY	9 cut(s)	94, 133, 137, 154, 179, 217, 236, 260, 321
CviKI_1	RGCY	9 cut(s)	94, 133, 137, 154, 179, 217, 236, 260, 321
DpnI	GATC	1 cut(s)	12
DpnII	GATC	1 cut(s)	10
EaeI	YGGCCR	1 cut(s)	234
EagI	CGGCCG	1 cut(s)	234
EclXI	CGGCCG	1 cut(s)	234
Eco24I	GRGCYC	1 cut(s)	181
Eco52I	CGGCCG	1 cut(s)	234
Eco88I	CYCGRG	1 cut(s)	155
EcoRII	CCWGG	3 cut(s)	97, 149, 291
EcoT38I	GRGCYC	1 cut(s)	181
FaeI	CATG	4 cut(s)	88, 111, 208, 279
FaiI	YATR	6 cut(s)	86, 109, 206, 249, 277, 326
FatI	CATG	4 cut(s)	84, 107, 204, 275
FbaI	TGATCA	1 cut(s)	10
FokI	GGATG	1 cut(s)	176
FriOI	GRGCYC	1 cut(s)	181
FseI	GGCCGGCC	1 cut(s)	137
GsuI	CTGGAG	1 cut(s)	81
HaeIII	GGCC	4 cut(s)	133, 137, 217, 236
HapII	CCGG	4 cut(s)	116, 134, 221, 233
Hin1II	CATG	4 cut(s)	88, 111, 208, 279
HincII	GTYRAC	1 cut(s)	315
HindII	GTYRAC	1 cut(s)	315
HpaII	CCGG	4 cut(s)	116, 134, 221, 233
HphI	GGTGA	2 cut(s)	5, 344
Hpy166II	GTNNAC	1 cut(s)	315
Hpy188I	TCNGA	2 cut(s)	183, 385
Hpy188III	TCNNGA	3 cut(s)	79, 340, 361
Hpy8I	GTNNAC	1 cut(s)	315
Hpy99I	CGWCG	1 cut(s)	287
HpyAV	CCTTC	2 cut(s)	196, 390
HpyCH4IV	ACGT	1 cut(s)	282
HpyCH4V	TGCA	4 cut(s)	107, 275, 299, 309
HpySE526I	ACGT	1 cut(s)	282
Hsp92II	CATG	4 cut(s)	88, 111, 208, 279
KroI	GCCGGC	1 cut(s)	133
KroNI	GCCGGC	1 cut(s)	135
Ksp22I	TGATCA	1 cut(s)	10
Kzo9I	GATC	1 cut(s)	10
LmnI	GCTCC	1 cut(s)	184
MaeII	ACGT	1 cut(s)	282
MaeIII	GTNAC	1 cut(s)	118
MalI	GATC	1 cut(s)	12
MboI	GATC	1 cut(s)	10
MboII	GAAGA	1 cut(s)	376
MhlI	GDGCHC	1 cut(s)	181
MluCI	AATT	3 cut(s)	21, 302, 367
MmeI	TCCRAC	1 cut(s)	206
MnlI	CCTC	6 cut(s)	105, 151, 203, 228, 247, 251
MroNI	GCCGGC	1 cut(s)	133
MroXI	GAANNNNTTC	1 cut(s)	368
MseI	TTAA	1 cut(s)	20
MspI	CCGG	4 cut(s)	116, 134, 221, 233
MspR9I	CCNGG	4 cut(s)	99, 151, 222, 293
MvaI	CCWGG	3 cut(s)	99, 151, 293
NaeI	GCCGGC	1 cut(s)	135
NciI	CCSGG	1 cut(s)	222
NdeII	GATC	1 cut(s)	10
NgoMIV	GCCGGC	1 cut(s)	133
NlaIII	CATG	4 cut(s)	88, 111, 208, 279
NlaIV	GGNNCC	2 cut(s)	114, 180
PaeR7I	CTCGAG	1 cut(s)	155
PdiI	GCCGGC	1 cut(s)	135
PdmI	GAANNNNTTC	1 cut(s)	368
PflMI	CCANNNNNTGG	1 cut(s)	276
PsiI	TTATAA	1 cut(s)	326
Psp6I	CCWGG	3 cut(s)	97, 149, 291
PspGI	CCWGG	3 cut(s)	97, 149, 291
PspN4I	GGNNCC	2 cut(s)	114, 180
PspPI	GGNCC	1 cut(s)	131
PspXI	VCTCGAGB	1 cut(s)	155
RigI	GGCCGGCC	1 cut(s)	137
SaqAI	TTAA	1 cut(s)	20
Sau3AI	GATC	1 cut(s)	10
Sau96I	GGNCC	1 cut(s)	131
ScrFI	CCNGG	4 cut(s)	99, 151, 222, 293
SduI	GDGCHC	1 cut(s)	181
SetI	ASST	9 cut(s)	51, 78, 188, 243, 258, 285, 297, 314, 323
Sfr274I	CTCGAG	1 cut(s)	155
SlaI	CTCGAG	1 cut(s)	155
SmlI	CTYRAG	2 cut(s)	139, 155
SmoI	CTYRAG	2 cut(s)	139, 155
Sse9I	AATT	3 cut(s)	21, 302, 367
StyD4I	CCNGG	4 cut(s)	97, 149, 220, 291
TaiI	ACGT	1 cut(s)	285
TaqI	TCGA	3 cut(s)	156, 339, 360
TasI	AATT	3 cut(s)	21, 302, 367
Tru1I	TTAA	1 cut(s)	20
Tru9I	TTAA	1 cut(s)	20
TscAI	CASTG	1 cut(s)	277
TspDTI	ATGAA	4 cut(s)	17, 104, 178, 185
TspRI	CASTG	1 cut(s)	277
Van91I	CCANNNNNTGG	1 cut(s)	276
XapI	RAATTY	1 cut(s)	367
XcmI	CCANNNNNNNNNTGG	1 cut(s)	105
XhoI	CTCGAG	1 cut(s)	155
XmnI	GAANNNNTTC	1 cut(s)	368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.