Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0004840

Physical Location & Seq

Genomic Coordinates Reverse (-)

11065717 .. 11068977

Gene Structure 3261 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG074500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1467 bp

ATGATTTGTCTTAACCAATGTGATATCCCTGAGTTTCCTGAAGTTTTGCAATGCCAAGAACTGACACTATTTATCATAGATAATAAAGTCCGGGAAATCCCATACAATCTTTTTAAAGAGATGAAAAAACTCAGGGTGTTGGATTTAACTAGATTCAGTATCCCATCGCTGCCTTCATCTCTTCAATTCCTAGAAAGTCTTCGAACGTTGTGTTTGGATCAATGCACATTGGGAGATGTAACTTTGATCGGACAGCTACAAAACTTGGAAATTCTCAGCTTTCTAAAGTCCAAATTCAAAGAGTTGCCCAAAGAAATTGGGCTACTGACACGTCTGCGATTGTTGGATTTGACTGGCTGCTCTCAACTCGAAGTGATTTCACCTAATGTTCTATCAAGCTTGAAAAGATTAGAGCACTTGAGAATGAGAAATAGTTTTAACCGGTGGGAAGCTGGAGGAGTCATCAGCACAGAAAGAAGTAATGCAAATCTTGAAGAACTAAAGAACTTGCCTCACCTAACCGAATTACAACTACATATCCCAAATGCTAACATTCTTCCACCATATTTGTTCACTGGTTGTAAGTTAGAGAGATTCCAAATATGTATTGGTTCTGTGTGGAAATGGGATGATGTGGATGAAGCCATCAATGCATTAAAGCTCCAGCTCACTGCCAACAGTCAATTTGACCAAGGACTAGAAATGTTGCTAAAGAAAACTGAACACTTGTACTTGGAGGTGATGGAGGGTGTTTATAGCAGTATTATATATCCACTAGGAGCTGAAGGTTCTCACAAACTGAAGCATCTCCATGTCCGAAACAATGTTGAATTTTGTACCAGCTTTTTGTTTATCATAAAAGGGAAGAAGGCTAACTACATTGACATTTCCTCAAAATGGATGTACATGCAGGTAGGGCTTCCAAGGTTGGAGAGATTGATTATCAATGAACTACCTAAGCTCACAACAATTTGGCACACCCAACTTGCTCCAAACTCTTTCCGCGGACTGAAAGACGTTACAGTGCAACAATGCAATGGTCTTAAATATATTTTTCAAGTCTCCATCATAGCCGCCGGTGTTTTTCAGCAGCTACAAAAGTTGATAGTAAAGGAATGTGTAGTGGAGGAAATAGTTTCTCAGGAAGAGGGCGTAGAAAAATTAATGCCCGATCAGTTCTTCCCAAAGCTAACATGTTTGGAATTTACAAGTCTATTCCAACTTGAGAGATTCTATCTAAAGATGCCTGCTATCAACTGGCCACTAAATACATTAGTGTTGTCTGATTGTCAGAAAGTGGATATCTTTGCCGCGGAATTTTCAGGCCTTCAGAAAACACATGACTTGGGGAATCTGCGTACTCGGGTTAAACTATATCCTGTTCCATTTGAGAAGGTAACTTACGCAAATATACATGAGCCCCCTGTACAATCTATGGCTCTTTCTGCTGTACTGATACTAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

488

Amino Acids

56.03

Weight (kDa)

6.8

Isoelectric Point (pI)

43.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	23 - 76	6.9e-06	Leucine rich repeat
LRR_14	PF23598	83 - 180	2.4e-08	Leucine-rich repeat region
LRR_RPS2	PF23247	265 - 373	1.6e-13	Plant disease resistance protein RPS2-like, leucine-rich repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004840)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g03870 FvH4_2g07542
rosa_chinensis	RchiOBHm_Chr5g0078211
rosa_multiflora	Rmu_sc0000777.1_g000012 Rmu_sc0002148.1_g000027 Rmu_sc0002538.1_g000027 Rmu_sc0002662.1_g000006 Rmu_sc0004277.1_g000060 Rmu_sc0004295.1_g000013 Rmu_sc0004607.1_g000001 Rmu_sc0006862.1_g000010 Rmu_sc0007315.1_g000010 Rmu_sc0007681.1_g000016 Rmu_sc0010265.1_g000010 Rmu_sc0024414.1_g000002 Rmu_sc0025517.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043280 Rroxscaffold_2G00103140 Rroxscaffold_2G00121790 Rroxscaffold_2G00123140 Rroxscaffold_3G00248480 Rroxscaffold_3G00267950 Rroxscaffold_5G00342740 Rroxscaffold_5G00374520 Rroxscaffold_6G00389230
rosa_rugosa	Rorug02G0190000 Rorug06G0080500 Rorug07G0304100
rosa_samantha	Rh4DG074400 Rh4DG074500
rosa_wichuraiana	Rw0G002790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	901
AccII	CGCG	2 cut(s)	1005, 1313
AciI	CCGC	5 cut(s)	1003, 1005, 1074, 1311, 1313
AclI	AACGTT	1 cut(s)	206
AclWI	GGATC	1 cut(s)	225
AcoI	YGGCCR	1 cut(s)	1259
AcsI	RAATTY	5 cut(s)	270, 293, 830, 1202, 1316
AcuI	CTGAAG	4 cut(s)	60, 804, 821, 1313
AfaI	GTAC	6 cut(s)	731, 838, 905, 1360, 1428, 1452
AfiI	CCNNNNNNNGG	1 cut(s)	897
AflIII	ACRYGT	2 cut(s)	329, 1193
AgeI	ACCGGT	1 cut(s)	441
AgsI	TTSAA	6 cut(s)	185, 298, 403, 494, 830, 1058
AjiI	CACGTC	1 cut(s)	332
Alw21I	GWGCWC	1 cut(s)	417
Alw26I	GTCTC	1 cut(s)	1066
AlwI	GGATC	1 cut(s)	225
Ama87I	CYCGRG	1 cut(s)	1362
AoxI	GGCC	2 cut(s)	1259, 1324
ApeKI	GCWGC	3 cut(s)	169, 357, 1090
ApoI	RAATTY	5 cut(s)	270, 293, 830, 1202, 1316
AseI	ATTAAT	1 cut(s)	1163
AsiGI	ACCGGT	1 cut(s)	441
Asp700I	GAANNNNTTC	1 cut(s)	198
AsuC2I	CCSGG	1 cut(s)	92
AsuHPI	GGTGA	3 cut(s)	372, 506, 751
AsuII	TTCGAA	1 cut(s)	202
AvaI	CYCGRG	1 cut(s)	1362
BalI	TGGCCA	1 cut(s)	1261
BanII	GRGCYC	1 cut(s)	1422
BarI	GAAGNNNNNNTAC	4 cut(s)	860, 892, 1385, 1417
BbsI	GAAGAC	1 cut(s)	191
Bbv12I	GWGCWC	1 cut(s)	417
BbvI	GCAGC	3 cut(s)	156, 344, 1102
BccI	CCATC	4 cut(s)	172, 653, 736, 1073
BciVI	GTATCC	1 cut(s)	170
BcnI	CCSGG	1 cut(s)	92
BcoDI	GTCTC	1 cut(s)	1066
BfaI	CTAG	4 cut(s)	150, 191, 698, 776
BfuAI	ACCTGC	1 cut(s)	901
BfuI	GTATCC	1 cut(s)	170
BisI	GCNGC	5 cut(s)	170, 358, 1074, 1091, 1311
BlsI	GCNGC	5 cut(s)	171, 359, 1075, 1092, 1312
Bme1390I	CCNGG	1 cut(s)	92
BmeT110I	CYCGRG	1 cut(s)	1362
BmgBI	CACGTC	1 cut(s)	332
BmrFI	CCNGG	1 cut(s)	92
BmsI	GCATC	2 cut(s)	814, 1233
BpiI	GAAGAC	1 cut(s)	191
BpmI	CTGGAG	2 cut(s)	474, 647
Bpu10I	CCTNAGC	1 cut(s)	957
Bpu14I	TTCGAA	1 cut(s)	202
BpuEI	CTTGAG	2 cut(s)	439, 1244
BpuMI	CCSGG	1 cut(s)	92
BsaJI	CCNNGG	4 cut(s)	691, 923, 1003, 1311
BsaWI	WCCGGW	1 cut(s)	441
Bsc4I	CCNNNNNNNGG	1 cut(s)	897
Bse118I	RCCGGY	2 cut(s)	441, 1076
Bse1I	ACTGG	3 cut(s)	358, 580, 1262
Bse3DI	GCAATG	2 cut(s)	56, 1042
BseDI	CCNNGG	4 cut(s)	691, 923, 1003, 1311
BseGI	GGATG	3 cut(s)	634, 643, 906
BseLI	CCNNNNNNNGG	1 cut(s)	897
BseMI	GCAATG	2 cut(s)	56, 1042
BseMII	CTCAG	4 cut(s)	21, 145, 289, 1154
BseNI	ACTGG	3 cut(s)	358, 580, 1262
BseRI	GAGGAG	1 cut(s)	471
BseXI	GCAGC	3 cut(s)	156, 344, 1102
Bsh1236I	CGCG	2 cut(s)	1005, 1313
BshFI	GGCC	2 cut(s)	1261, 1326
BshTI	ACCGGT	1 cut(s)	441
BsiHKAI	GWGCWC	1 cut(s)	417
BsiHKCI	CYCGRG	1 cut(s)	1362
BsiSI	CCGG	3 cut(s)	91, 442, 1077
BslI	CCNNNNNNNGG	1 cut(s)	897
BsmAI	GTCTC	1 cut(s)	1066
BsnI	GGCC	2 cut(s)	1261, 1326
BsoBI	CYCGRG	1 cut(s)	1362
Bsp119I	TTCGAA	1 cut(s)	202
Bsp1286I	GDGCHC	2 cut(s)	417, 1422
Bsp1407I	TGTACA	2 cut(s)	903, 1426
Bsp143I	GATC	3 cut(s)	217, 246, 1171
BspACI	CCGC	5 cut(s)	1003, 1005, 1074, 1311, 1313
BspANI	GGCC	2 cut(s)	1261, 1326
BspCNI	CTCAG	4 cut(s)	22, 144, 288, 1153
BspFNI	CGCG	2 cut(s)	1005, 1313
BspMI	ACCTGC	1 cut(s)	901
BspPI	GGATC	1 cut(s)	225
BspT104I	TTCGAA	1 cut(s)	202
BsrDI	GCAATG	2 cut(s)	56, 1042
BsrFI	RCCGGY	2 cut(s)	441, 1076
BsrGI	TGTACA	2 cut(s)	903, 1426
BsrI	ACTGG	3 cut(s)	358, 580, 1262
BssAI	RCCGGY	2 cut(s)	441, 1076
BssECI	CCNNGG	4 cut(s)	691, 923, 1003, 1311
BssMI	GATC	3 cut(s)	217, 246, 1171
BssT1I	CCWWGG	2 cut(s)	691, 923
Bst4CI	ACNGT	2 cut(s)	680, 1024
Bst6I	CTCTTC	2 cut(s)	186, 1140
BstAUI	TGTACA	2 cut(s)	903, 1426
BstBI	TTCGAA	1 cut(s)	202
BstC8I	GCNNGC	1 cut(s)	1248
BstDEI	CTNAG	5 cut(s)	30, 131, 275, 957, 1140
BstDSI	CCRYGG	2 cut(s)	1003, 1311
BstF5I	GGATG	3 cut(s)	634, 643, 906
BstFNI	CGCG	2 cut(s)	1005, 1313
BstKTI	GATC	3 cut(s)	220, 249, 1174
BstMAI	GTCTC	1 cut(s)	1066
BstMBI	GATC	3 cut(s)	217, 246, 1171
BstMWI	GCNNNNNNNGC	3 cut(s)	650, 916, 1445
BstNSI	RCATGY	2 cut(s)	910, 1197
BstSCI	CCNGG	1 cut(s)	90
BstUI	CGCG	2 cut(s)	1005, 1313
BstV1I	GCAGC	3 cut(s)	156, 344, 1102
BstV2I	GAAGAC	1 cut(s)	191
BsuI	GTATCC	1 cut(s)	170
BsuRI	GGCC	2 cut(s)	1261, 1326
BtgI	CCRYGG	2 cut(s)	1003, 1311
BtgZI	GCGATG	1 cut(s)	150
BtrI	CACGTC	1 cut(s)	332
BtsCI	GGATG	3 cut(s)	634, 643, 906
BtsI	GCAGTG	1 cut(s)	669
BtsIMutI	CAGTG	3 cut(s)	573, 669, 1029
BveI	ACCTGC	1 cut(s)	901
Cac8I	GCNNGC	1 cut(s)	1248
Cfr10I	RCCGGY	2 cut(s)	441, 1076
Cfr42I	CCGCGG	2 cut(s)	1006, 1314
Csp6I	GTAC	6 cut(s)	730, 837, 904, 1359, 1427, 1451
CspAI	ACCGGT	1 cut(s)	441
CspCI	CAANNNNNGTGG	2 cut(s)	549, 584
CviAII	CATG	5 cut(s)	812, 907, 1194, 1340, 1415
CviQI	GTAC	6 cut(s)	730, 837, 904, 1359, 1427, 1451
DdeI	CTNAG	5 cut(s)	30, 131, 275, 957, 1140
DpnI	GATC	3 cut(s)	219, 248, 1173
DpnII	GATC	3 cut(s)	217, 246, 1171
DraI	TTTAAA	1 cut(s)	115
EaeI	YGGCCR	1 cut(s)	1259
Eam1104I	CTCTTC	2 cut(s)	186, 1140
EarI	CTCTTC	2 cut(s)	186, 1140
Eco130I	CCWWGG	2 cut(s)	691, 923
Eco147I	AGGCCT	1 cut(s)	1326
Eco24I	GRGCYC	1 cut(s)	1422
Eco32I	GATATC	2 cut(s)	25, 1303
Eco57I	CTGAAG	4 cut(s)	60, 804, 821, 1313
Eco88I	CYCGRG	1 cut(s)	1362
EcoRV	GATATC	2 cut(s)	25, 1303
EcoT14I	CCWWGG	2 cut(s)	691, 923
EcoT22I	ATGCAT	1 cut(s)	655
EcoT38I	GRGCYC	1 cut(s)	1422
ErhI	CCWWGG	2 cut(s)	691, 923
FaeI	CATG	5 cut(s)	815, 910, 1197, 1343, 1418
FatI	CATG	5 cut(s)	811, 906, 1193, 1339, 1414
Fnu4HI	GCNGC	5 cut(s)	170, 358, 1074, 1091, 1311
FokI	GGATG	3 cut(s)	641, 650, 913
FriOI	GRGCYC	1 cut(s)	1422
Fsp4HI	GCNGC	5 cut(s)	170, 358, 1074, 1091, 1311
FspBI	CTAG	4 cut(s)	150, 191, 698, 776
GluI	GCNGC	5 cut(s)	170, 358, 1074, 1091, 1311
GsuI	CTGGAG	2 cut(s)	474, 647
HaeIII	GGCC	2 cut(s)	1261, 1326
HapII	CCGG	3 cut(s)	91, 442, 1077
Hin1II	CATG	5 cut(s)	815, 910, 1197, 1343, 1418
HindIII	AAGCTT	1 cut(s)	397
HinfI	GANTC	5 cut(s)	153, 459, 594, 1230, 1351
HpaII	CCGG	3 cut(s)	91, 442, 1077
HphI	GGTGA	3 cut(s)	372, 506, 751
Hpy166II	GTNNAC	1 cut(s)	573
Hpy188I	TCNGA	5 cut(s)	251, 818, 1285, 1293, 1332
Hpy188III	TCNNGA	3 cut(s)	38, 491, 1142
Hpy8I	GTNNAC	1 cut(s)	573
HpyAV	CCTTC	5 cut(s)	183, 779, 862, 1337, 1387
HpyCH4III	ACNGT	2 cut(s)	680, 1024
HpyCH4IV	ACGT	3 cut(s)	206, 331, 1017
HpyCH4V	TGCA	7 cut(s)	49, 225, 485, 653, 910, 1027, 1035
HpyF10VI	GCNNNNNNNGC	3 cut(s)	650, 916, 1445
HpyF3I	CTNAG	5 cut(s)	30, 131, 275, 957, 1140
HpySE526I	ACGT	3 cut(s)	206, 331, 1017
Hsp92II	CATG	5 cut(s)	815, 910, 1197, 1343, 1418
KspI	CCGCGG	2 cut(s)	1006, 1314
Kzo9I	GATC	3 cut(s)	217, 246, 1171
LmnI	GCTCC	3 cut(s)	666, 779, 994
Lsp1109I	GCAGC	3 cut(s)	156, 344, 1102
LweI	GCATC	2 cut(s)	814, 1233
MaeI	CTAG	4 cut(s)	150, 191, 698, 776
MaeII	ACGT	3 cut(s)	206, 331, 1017
MaeIII	GTNAC	3 cut(s)	238, 1018, 1396
MalI	GATC	3 cut(s)	219, 248, 1173
MboI	GATC	3 cut(s)	217, 246, 1171
MboII	GAAGA	7 cut(s)	173, 191, 506, 548, 877, 1157, 1171
MhlI	GDGCHC	2 cut(s)	417, 1422
MlsI	TGGCCA	1 cut(s)	1261
MluNI	TGGCCA	1 cut(s)	1261
MlyI	GAGTC	1 cut(s)	468
MmeI	TCCRAC	4 cut(s)	120, 324, 909, 1243
MnlI	CCTC	7 cut(s)	449, 522, 730, 739, 901, 1120, 1141
Mox20I	TGGCCA	1 cut(s)	1261
Mph1103I	ATGCAT	1 cut(s)	655
MroXI	GAANNNNTTC	1 cut(s)	198
MscI	TGGCCA	1 cut(s)	1261
MseI	TTAA	8 cut(s)	12, 114, 146, 438, 656, 1044, 1163, 1368
MslI	CAYNNNNRTG	1 cut(s)	810
Msp20I	TGGCCA	1 cut(s)	1261
MspA1I	CMGCKG	2 cut(s)	1005, 1313
MspI	CCGG	3 cut(s)	91, 442, 1077
MspR9I	CCNGG	1 cut(s)	92
MvnI	CGCG	2 cut(s)	1005, 1313
MwoI	GCNNNNNNNGC	3 cut(s)	650, 916, 1445
NciI	CCSGG	1 cut(s)	92
NdeII	GATC	3 cut(s)	217, 246, 1171
NlaIII	CATG	5 cut(s)	815, 910, 1197, 1343, 1418
NsiI	ATGCAT	1 cut(s)	655
NspI	RCATGY	2 cut(s)	910, 1197
NspV	TTCGAA	1 cut(s)	202
PceI	AGGCCT	1 cut(s)	1326
PciI	ACATGT	1 cut(s)	1193
PdmI	GAANNNNTTC	1 cut(s)	198
PfeI	GAWTC	4 cut(s)	153, 594, 1230, 1351
PfoI	TCCNGGA	1 cut(s)	90
PinAI	ACCGGT	1 cut(s)	441
PkrI	GCNGC	5 cut(s)	171, 359, 1075, 1092, 1312
PleI	GAGTC	1 cut(s)	467
PpsI	GAGTC	1 cut(s)	467
PscI	ACATGT	1 cut(s)	1193
PshBI	ATTAAT	1 cut(s)	1163
Psp1406I	AACGTT	1 cut(s)	206
RsaI	GTAC	6 cut(s)	731, 838, 905, 1360, 1428, 1452
RsaNI	GTAC	6 cut(s)	730, 837, 904, 1359, 1427, 1451
RseI	CAYNNNNRTG	1 cut(s)	810
SacII	CCGCGG	2 cut(s)	1006, 1314
SaqAI	TTAA	8 cut(s)	12, 114, 146, 438, 656, 1044, 1163, 1368
SatI	GCNGC	5 cut(s)	170, 358, 1074, 1091, 1311
Sau3AI	GATC	3 cut(s)	217, 246, 1171
SchI	GAGTC	1 cut(s)	468
ScrFI	CCNGG	1 cut(s)	92
SduI	GDGCHC	2 cut(s)	417, 1422
SfaNI	GCATC	2 cut(s)	814, 1233
Sfr303I	CCGCGG	2 cut(s)	1006, 1314
SfuI	TTCGAA	1 cut(s)	202
SgrAI	CRCCGGYG	1 cut(s)	1076
SgrBI	CCGCGG	2 cut(s)	1006, 1314
SmiMI	CAYNNNNRTG	1 cut(s)	810
SmlI	CTYRAG	2 cut(s)	418, 1223
SmoI	CTYRAG	2 cut(s)	418, 1223
SseBI	AGGCCT	1 cut(s)	1326
SsiI	CCGC	5 cut(s)	1003, 1005, 1074, 1311, 1313
SspMI	CTAG	4 cut(s)	150, 191, 698, 776
StuI	AGGCCT	1 cut(s)	1326
StyD4I	CCNGG	1 cut(s)	90
StyI	CCWWGG	2 cut(s)	691, 923
TaaI	ACNGT	2 cut(s)	680, 1024
TaiI	ACGT	3 cut(s)	209, 334, 1020
TaqI	TCGA	2 cut(s)	202, 369
TatI	WGTACW	4 cut(s)	729, 903, 1426, 1450
TauI	GCSGC	2 cut(s)	1076, 1313
TfiI	GAWTC	4 cut(s)	153, 594, 1230, 1351
Tru1I	TTAA	8 cut(s)	12, 114, 146, 438, 656, 1044, 1163, 1368
Tru9I	TTAA	8 cut(s)	12, 114, 146, 438, 656, 1044, 1163, 1368
TscAI	CASTG	3 cut(s)	580, 676, 1029
TseI	GCWGC	3 cut(s)	169, 357, 1090
TspDTI	ATGAA	4 cut(s)	137, 165, 654, 963
TspRI	CASTG	3 cut(s)	580, 676, 1029
VspI	ATTAAT	1 cut(s)	1163
XapI	RAATTY	5 cut(s)	270, 293, 830, 1202, 1316
XceI	RCATGY	2 cut(s)	910, 1197
XcmI	CCANNNNNNNNNTGG	1 cut(s)	605
XmnI	GAANNNNTTC	1 cut(s)	198
XspI	CTAG	4 cut(s)	150, 191, 698, 776
Zsp2I	ATGCAT	1 cut(s)	655

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.