Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004840

Physical Location & Seq

Genomic Coordinates Reverse (-)

25573523 .. 25580560

Gene Structure 7038 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00103140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGGAGGGTGGCCTCCCTACGAGGTACCGGCCGACCTCCACCATAGCCGAGTAGCTCGGGTGTCGGGCCACCGGATGCATGTCATAAGCCGGACTAACCATGTCGCGGCCCACCTACGAGGCTTTGCAGCCAATAGCGATACACCAATCTTTACTCTATACAAATGCTATATACATCCCAACACGAACGCGATACATATGGTTGTCATTGTCACCCCTCCGATCAAGTCCGATTCTTTGGAATATGAGAAGCTCCGAAGAAGATCACCGCCACCGGGGATTGATGGGCTGGTCGGCCTCTTAAGGGTAAGACCGGGGGGTGGCATCACTCGCCCATCGCCACCGATCTCTACCATTGTAGCCCCGCCGCACCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

125

Amino Acids

13.74

Weight (kDa)

10.34

Isoelectric Point (pI)

54.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004840)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g03870 FvH4_2g07542
rosa_chinensis	RchiOBHm_Chr5g0078211
rosa_multiflora	Rmu_sc0000777.1_g000012 Rmu_sc0002148.1_g000027 Rmu_sc0002538.1_g000027 Rmu_sc0002662.1_g000006 Rmu_sc0004277.1_g000060 Rmu_sc0004295.1_g000013 Rmu_sc0004607.1_g000001 Rmu_sc0006862.1_g000010 Rmu_sc0007315.1_g000010 Rmu_sc0007681.1_g000016 Rmu_sc0010265.1_g000010 Rmu_sc0024414.1_g000002 Rmu_sc0025517.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043280 Rroxscaffold_2G00103140 Rroxscaffold_2G00121790 Rroxscaffold_2G00123140 Rroxscaffold_3G00248480 Rroxscaffold_3G00267950 Rroxscaffold_5G00342740 Rroxscaffold_5G00374520 Rroxscaffold_6G00389230
rosa_rugosa	Rorug02G0190000 Rorug06G0080500 Rorug07G0304100
rosa_samantha	Rh4DG074400 Rh4DG074500
rosa_wichuraiana	Rw0G002790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	25
AccB1I	GGYRCC	1 cut(s)	25
AccII	CGCG	2 cut(s)	107, 191
AciI	CCGC	4 cut(s)	107, 269, 365, 368
AcoI	YGGCCR	1 cut(s)	30
AfaI	GTAC	1 cut(s)	27
AfiI	CCNNNNNNNGG	4 cut(s)	106, 275, 304, 320
AflII	CTTAAG	1 cut(s)	301
AluBI	AGCT	2 cut(s)	56, 253
AluI	AGCT	2 cut(s)	56, 253
Ama87I	CYCGRG	1 cut(s)	57
AoxI	GGCC	5 cut(s)	11, 30, 67, 108, 295
ApeKI	GCWGC	1 cut(s)	128
Asp718I	GGTACC	1 cut(s)	25
AspS9I	GGNCC	2 cut(s)	67, 109
AsuC2I	CCSGG	2 cut(s)	276, 315
AsuHPI	GGTGA	2 cut(s)	205, 258
AvaI	CYCGRG	1 cut(s)	57
BanI	GGYRCC	1 cut(s)	25
BbvI	GCAGC	1 cut(s)	140
BccI	CCATC	2 cut(s)	278, 343
BcnI	CCSGG	2 cut(s)	276, 315
BfaI	CTAG	1 cut(s)	376
BfrI	CTTAAG	1 cut(s)	301
BisI	GCNGC	3 cut(s)	108, 129, 368
BlsI	GCNGC	3 cut(s)	109, 130, 369
Bme1390I	CCNGG	2 cut(s)	276, 315
BmeT110I	CYCGRG	1 cut(s)	57
BmgT120I	GGNCC	2 cut(s)	67, 109
BmiI	GGNNCC	1 cut(s)	27
BmrFI	CCNGG	2 cut(s)	276, 315
BmsI	GCATC	2 cut(s)	66, 333
BpuMI	CCSGG	2 cut(s)	276, 315
BsaJI	CCNNGG	2 cut(s)	275, 314
BsaWI	WCCGGW	1 cut(s)	72
Bsc4I	CCNNNNNNNGG	4 cut(s)	106, 275, 304, 320
Bse118I	RCCGGY	1 cut(s)	28
BseDI	CCNNGG	2 cut(s)	275, 314
BseGI	GGATG	2 cut(s)	81, 175
BseLI	CCNNNNNNNGG	4 cut(s)	106, 275, 304, 320
BseX3I	CGGCCG	1 cut(s)	30
BseXI	GCAGC	1 cut(s)	140
Bsh1236I	CGCG	2 cut(s)	107, 191
Bsh1285I	CGRYCG	1 cut(s)	33
BshFI	GGCC	5 cut(s)	13, 32, 69, 110, 297
BshNI	GGYRCC	1 cut(s)	25
BsiEI	CGRYCG	1 cut(s)	33
BsiHKCI	CYCGRG	1 cut(s)	57
BsiSI	CCGG	5 cut(s)	29, 73, 91, 275, 314
BslI	CCNNNNNNNGG	4 cut(s)	106, 275, 304, 320
BsnI	GGCC	5 cut(s)	13, 32, 69, 110, 297
BsoBI	CYCGRG	1 cut(s)	57
Bsp143I	GATC	3 cut(s)	222, 263, 345
BspACI	CCGC	4 cut(s)	107, 269, 365, 368
BspANI	GGCC	5 cut(s)	13, 32, 69, 110, 297
BspFNI	CGCG	2 cut(s)	107, 191
BspLI	GGNNCC	1 cut(s)	27
BspT107I	GGYRCC	1 cut(s)	25
BspTI	CTTAAG	1 cut(s)	301
BsrFI	RCCGGY	1 cut(s)	28
BssAI	RCCGGY	1 cut(s)	28
BssECI	CCNNGG	2 cut(s)	275, 314
BssMI	GATC	3 cut(s)	222, 263, 345
BstAFI	CTTAAG	1 cut(s)	301
BstF5I	GGATG	2 cut(s)	81, 175
BstFNI	CGCG	2 cut(s)	107, 191
BstKTI	GATC	3 cut(s)	225, 266, 348
BstMBI	GATC	3 cut(s)	222, 263, 345
BstMCI	CGRYCG	1 cut(s)	33
BstMWI	GCNNNNNNNGC	1 cut(s)	330
BstNSI	RCATGY	1 cut(s)	83
BstSCI	CCNGG	2 cut(s)	274, 313
BstUI	CGCG	2 cut(s)	107, 191
BstV1I	GCAGC	1 cut(s)	140
BstZI	CGGCCG	1 cut(s)	30
BsuRI	GGCC	5 cut(s)	13, 32, 69, 110, 297
BtgZI	GCGATG	1 cut(s)	321
BtsCI	GGATG	2 cut(s)	81, 175
Cfr10I	RCCGGY	1 cut(s)	28
Cfr13I	GGNCC	2 cut(s)	67, 109
Csp6I	GTAC	1 cut(s)	26
CviAII	CATG	2 cut(s)	80, 101
CviQI	GTAC	1 cut(s)	26
DpnI	GATC	3 cut(s)	224, 265, 347
DpnII	GATC	3 cut(s)	222, 263, 345
EaeI	YGGCCR	1 cut(s)	30
EagI	CGGCCG	1 cut(s)	30
EclXI	CGGCCG	1 cut(s)	30
Eco52I	CGGCCG	1 cut(s)	30
Eco88I	CYCGRG	1 cut(s)	57
EcoT22I	ATGCAT	1 cut(s)	81
FaeI	CATG	2 cut(s)	83, 104
FatI	CATG	2 cut(s)	79, 100
FauI	CCCGC	1 cut(s)	372
FauNDI	CATATG	1 cut(s)	198
Fnu4HI	GCNGC	3 cut(s)	108, 129, 368
FokI	GGATG	2 cut(s)	88, 162
Fsp4HI	GCNGC	3 cut(s)	108, 129, 368
FspBI	CTAG	1 cut(s)	376
GluI	GCNGC	3 cut(s)	108, 129, 368
HaeIII	GGCC	5 cut(s)	13, 32, 69, 110, 297
HapII	CCGG	5 cut(s)	29, 73, 91, 275, 314
Hin1II	CATG	2 cut(s)	83, 104
HinfI	GANTC	1 cut(s)	233
HpaII	CCGG	5 cut(s)	29, 73, 91, 275, 314
HphI	GGTGA	2 cut(s)	205, 258
Hpy188I	TCNGA	3 cut(s)	222, 232, 257
HpyCH4V	TGCA	2 cut(s)	79, 128
HpyF10VI	GCNNNNNNNGC	1 cut(s)	330
Hsp92II	CATG	2 cut(s)	83, 104
KpnI	GGTACC	1 cut(s)	29
Kzo9I	GATC	3 cut(s)	222, 263, 345
LmnI	GCTCC	1 cut(s)	258
LpnPI	CCDG	6 cut(s)	42, 86, 104, 275, 288, 327
Lsp1109I	GCAGC	1 cut(s)	140
LweI	GCATC	2 cut(s)	66, 333
MaeI	CTAG	1 cut(s)	376
MaeIII	GTNAC	1 cut(s)	211
MalI	GATC	3 cut(s)	224, 265, 347
MboI	GATC	3 cut(s)	222, 263, 345
MboII	GAAGA	2 cut(s)	270, 273
MnlI	CCTC	6 cut(s)	16, 24, 47, 113, 228, 308
Mph1103I	ATGCAT	1 cut(s)	81
MseI	TTAA	1 cut(s)	302
MspCI	CTTAAG	1 cut(s)	301
MspI	CCGG	5 cut(s)	29, 73, 91, 275, 314
MspR9I	CCNGG	2 cut(s)	276, 315
MvnI	CGCG	2 cut(s)	107, 191
MwoI	GCNNNNNNNGC	1 cut(s)	330
NciI	CCSGG	2 cut(s)	276, 315
NdeI	CATATG	1 cut(s)	198
NdeII	GATC	3 cut(s)	222, 263, 345
NlaIII	CATG	2 cut(s)	83, 104
NlaIV	GGNNCC	1 cut(s)	27
NmeAIII	GCCGAG	1 cut(s)	74
NmuCI	GTSAC	1 cut(s)	211
NsiI	ATGCAT	1 cut(s)	81
NspI	RCATGY	1 cut(s)	83
PfeI	GAWTC	1 cut(s)	233
PkrI	GCNGC	3 cut(s)	109, 130, 369
PspN4I	GGNNCC	1 cut(s)	27
PspPI	GGNCC	2 cut(s)	67, 109
RsaI	GTAC	1 cut(s)	27
RsaNI	GTAC	1 cut(s)	26
SaqAI	TTAA	1 cut(s)	302
SatI	GCNGC	3 cut(s)	108, 129, 368
Sau3AI	GATC	3 cut(s)	222, 263, 345
Sau96I	GGNCC	2 cut(s)	67, 109
ScrFI	CCNGG	2 cut(s)	276, 315
SetI	ASST	5 cut(s)	27, 39, 58, 117, 255
SfaNI	GCATC	2 cut(s)	66, 333
SmlI	CTYRAG	1 cut(s)	301
SmoI	CTYRAG	1 cut(s)	301
SsiI	CCGC	4 cut(s)	107, 269, 365, 368
SspMI	CTAG	1 cut(s)	376
StyD4I	CCNGG	2 cut(s)	274, 313
TauI	GCSGC	2 cut(s)	110, 370
TfiI	GAWTC	1 cut(s)	233
Tru1I	TTAA	1 cut(s)	302
Tru9I	TTAA	1 cut(s)	302
TseFI	GTSAC	1 cut(s)	211
TseI	GCWGC	1 cut(s)	128
Tsp45I	GTSAC	1 cut(s)	211
Vha464I	CTTAAG	1 cut(s)	301
XceI	RCATGY	1 cut(s)	83
XspI	CTAG	1 cut(s)	376
Zsp2I	ATGCAT	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.