Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002538.1

Orthogroup ID

OG0004840

Physical Location & Seq

Genomic Coordinates Forward (+)

105243 .. 111602

Gene Structure 6360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002538.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

atgttgggatatcactatgcgtattttcacgatgcggtgaaaaaactggaaggcaacctcagagggtctttggaggaggacaagctacctatcagattgcagttcttcaagacaagcacatcgcactgtgggatagatgatgttcgcttaccacctattatcgaaaccagtactttactagaggaaagagatatttgggtaaagttttctcatatcaagcaacaattatccaacaactacgacagaaatagggagtatgaagcgctcatctccgagtctctttcgagtatgggtgtgccccaagatgagcttcttactgctgttcacatcctattccatgcggttgaggcagccggcgaccccgagctccctgttataccggccgacctccaccatggcagcgtagctcgggtgttggtctaccggatgcatgtcataggcggggctaaccatgccgcggggcccacctatgaggtcgttgattatgcttggcggtatggactagggcaaaaaacccagcccaaattacgccctagagggcagcccaaagagaagaggcccaattcatggcctagcaagctaggattgacccaagcccaaaccaccattccaccatgccgcccacgagtcaacccaccactagccgcaccgcccaagagtcacaccgtcgtgccccacaacaccagcactgcccgaaccccaccacgccagcactgcccaaactcttccccactagtcgtatcttcgccagtggatcatggagcgtcctgtccctacacaagaaccaccacacgacgcctagaaaagtctcccaaacctgtcatcaaaactgccagccaaacatcctctctcctgtccttagcccatagcattgaagtgcccgtccgggttcccactgttgatttttccacggatgacctcagaccgagacttgagaggaaggctacttatgatgagacaaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zf-rbx1

Protein Analysis

321

Amino Acids

35.85

Weight (kDa)

9.17

Isoelectric Point (pI)

48.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004840)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g03870 FvH4_2g07542
rosa_chinensis	RchiOBHm_Chr5g0078211
rosa_multiflora	Rmu_sc0000777.1_g000012 Rmu_sc0002148.1_g000027 Rmu_sc0002538.1_g000027 Rmu_sc0002662.1_g000006 Rmu_sc0004277.1_g000060 Rmu_sc0004295.1_g000013 Rmu_sc0004607.1_g000001 Rmu_sc0006862.1_g000010 Rmu_sc0007315.1_g000010 Rmu_sc0007681.1_g000016 Rmu_sc0010265.1_g000010 Rmu_sc0024414.1_g000002 Rmu_sc0025517.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043280 Rroxscaffold_2G00103140 Rroxscaffold_2G00121790 Rroxscaffold_2G00123140 Rroxscaffold_3G00248480 Rroxscaffold_3G00267950 Rroxscaffold_5G00342740 Rroxscaffold_5G00374520 Rroxscaffold_6G00389230
rosa_rugosa	Rorug02G0190000 Rorug06G0080500 Rorug07G0304100
rosa_samantha	Rh4DG074400 Rh4DG074500
rosa_wichuraiana	Rw0G002790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	567
AccI	GTMKAC	1 cut(s)	420
AccII	CGCG	1 cut(s)	458
AciI	CCGC	9 cut(s)	35, 341, 441, 456, 458, 493, 619, 645, 650
AclWI	GGATC	1 cut(s)	762
AcoI	YGGCCR	1 cut(s)	381
AcyI	GRCGYC	1 cut(s)	796
AfaI	GTAC	1 cut(s)	172
AfeI	AGCGCT	1 cut(s)	264
AfiI	CCNNNNNNNGG	2 cut(s)	457, 567
AgsI	TTSAA	2 cut(s)	109, 875
AhlI	ACTAGT	1 cut(s)	733
AjuI	GAANNNNNNNTTGG	4 cut(s)	294, 326, 591, 623
AleI	CACNNNNGTG	1 cut(s)	668
AluBI	AGCT	5 cut(s)	85, 310, 367, 407, 580
AluI	AGCT	5 cut(s)	85, 310, 367, 407, 580
Alw21I	GWGCWC	1 cut(s)	369
Alw26I	GTCTC	4 cut(s)	282, 813, 922, 950
AlwI	GGATC	1 cut(s)	762
Ama87I	CYCGRG	2 cut(s)	362, 408
Aor51HI	AGCGCT	1 cut(s)	264
AoxI	GGCC	4 cut(s)	381, 461, 557, 569
ApaI	GGGCCC	1 cut(s)	465
ApeKI	GCWGC	3 cut(s)	350, 399, 541
AspLEI	GCGC	1 cut(s)	265
AspS9I	GGNCC	3 cut(s)	461, 462, 558
AsuC2I	CCSGG	1 cut(s)	887
AsuHPI	GGTGA	1 cut(s)	49
AvaI	CYCGRG	2 cut(s)	362, 408
BaeGI	GKGCMC	4 cut(s)	300, 465, 675, 882
BanII	GRGCYC	2 cut(s)	369, 465
BauI	CACGAG	1 cut(s)	624
Bbv12I	GWGCWC	1 cut(s)	369
BbvI	GCAGC	3 cut(s)	362, 411, 553
BcnI	CCSGG	1 cut(s)	887
BcoDI	GTCTC	4 cut(s)	282, 813, 922, 950
BcuI	ACTAGT	1 cut(s)	733
BfaI	CTAG	8 cut(s)	179, 503, 534, 573, 581, 641, 734, 800
BfoI	RGCGCY	1 cut(s)	266
BisI	GCNGC	6 cut(s)	351, 400, 456, 542, 619, 645
BlsI	GCNGC	6 cut(s)	352, 401, 457, 543, 620, 646
BmcAI	AGTACT	1 cut(s)	172
Bme1390I	CCNGG	1 cut(s)	887
BmeT110I	CYCGRG	2 cut(s)	362, 408
BmgT120I	GGNCC	3 cut(s)	461, 462, 558
BmiI	GGNNCC	3 cut(s)	462, 463, 891
BmrFI	CCNGG	1 cut(s)	887
BmsI	GCATC	2 cut(s)	22, 417
Bpu10I	CCTNAGC	1 cut(s)	859
BpuEI	CTTGAG	1 cut(s)	953
BpuMI	CCSGG	1 cut(s)	887
BsaHI	GRCGYC	1 cut(s)	796
BsaJI	CCNNGG	3 cut(s)	394, 456, 909
BsaWI	WCCGGW	1 cut(s)	423
Bsc4I	CCNNNNNNNGG	2 cut(s)	457, 567
Bse118I	RCCGGY	2 cut(s)	353, 379
Bse1I	ACTGG	3 cut(s)	51, 168, 749
BseDI	CCNNGG	3 cut(s)	394, 456, 909
BseGI	GGATG	4 cut(s)	327, 432, 842, 919
BseLI	CCNNNNNNNGG	2 cut(s)	457, 567
BseMII	CTCAG	2 cut(s)	73, 934
BseNI	ACTGG	3 cut(s)	51, 168, 749
BseRI	GAGGAG	1 cut(s)	89
BseSI	GKGCMC	4 cut(s)	300, 465, 675, 882
BseX3I	CGGCCG	1 cut(s)	381
BseXI	GCAGC	3 cut(s)	362, 411, 553
BseYI	CCCAGC	1 cut(s)	516
Bsh1236I	CGCG	1 cut(s)	458
Bsh1285I	CGRYCG	1 cut(s)	384
BshFI	GGCC	4 cut(s)	383, 463, 559, 571
BsiEI	CGRYCG	1 cut(s)	384
BsiHKAI	GWGCWC	1 cut(s)	369
BsiHKCI	CYCGRG	2 cut(s)	362, 408
BsiSI	CCGG	4 cut(s)	354, 380, 424, 886
BslFI	GGGAC	1 cut(s)	756
BslI	CCNNNNNNNGG	2 cut(s)	457, 567
BsmAI	GTCTC	4 cut(s)	282, 813, 922, 950
BsmFI	GGGAC	1 cut(s)	756
BsnI	GGCC	4 cut(s)	383, 463, 559, 571
BsoBI	CYCGRG	2 cut(s)	362, 408
Bsp120I	GGGCCC	1 cut(s)	461
Bsp1286I	GDGCHC	5 cut(s)	300, 369, 465, 675, 882
Bsp143I	GATC	1 cut(s)	754
Bsp19I	CCATGG	1 cut(s)	394
BspACI	CCGC	9 cut(s)	35, 341, 441, 456, 458, 493, 619, 645, 650
BspANI	GGCC	4 cut(s)	383, 463, 559, 571
BspCNI	CTCAG	2 cut(s)	72, 933
BspFNI	CGCG	1 cut(s)	458
BspLI	GGNNCC	3 cut(s)	462, 463, 891
BspPI	GGATC	1 cut(s)	762
BsrFI	RCCGGY	2 cut(s)	353, 379
BsrI	ACTGG	3 cut(s)	51, 168, 749
BssAI	RCCGGY	2 cut(s)	353, 379
BssECI	CCNNGG	3 cut(s)	394, 456, 909
BssMI	GATC	1 cut(s)	754
BssNI	GRCGYC	1 cut(s)	796
BssSI	CACGAG	1 cut(s)	624
BssT1I	CCWWGG	1 cut(s)	394
Bst2BI	CACGAG	1 cut(s)	624
Bst4CI	ACNGT	3 cut(s)	128, 667, 898
Bst6I	CTCTTC	2 cut(s)	548, 730
BstACI	GRCGYC	1 cut(s)	796
BstC8I	GCNNGC	4 cut(s)	355, 578, 710, 835
BstDEI	CTNAG	3 cut(s)	59, 859, 920
BstDSI	CCRYGG	3 cut(s)	394, 456, 909
BstF5I	GGATG	4 cut(s)	327, 432, 842, 919
BstFNI	CGCG	1 cut(s)	458
BstH2I	RGCGCY	1 cut(s)	266
BstHHI	GCGC	1 cut(s)	265
BstKTI	GATC	1 cut(s)	757
BstMAI	GTCTC	4 cut(s)	282, 813, 922, 950
BstMBI	GATC	1 cut(s)	754
BstMCI	CGRYCG	1 cut(s)	384
BstMWI	GCNNNNNNNGC	4 cut(s)	347, 452, 577, 714
BstNSI	RCATGY	1 cut(s)	434
BstSCI	CCNGG	1 cut(s)	885
BstSLI	GKGCMC	4 cut(s)	300, 465, 675, 882
BstUI	CGCG	1 cut(s)	458
BstV1I	GCAGC	3 cut(s)	362, 411, 553
BstZI	CGGCCG	1 cut(s)	381
BsuRI	GGCC	4 cut(s)	383, 463, 559, 571
BtgI	CCRYGG	3 cut(s)	394, 456, 909
BtgZI	GCGATG	1 cut(s)	105
BtsCI	GGATG	4 cut(s)	327, 432, 842, 919
BtsI	GCAGTG	2 cut(s)	687, 712
BtsIMutI	CAGTG	5 cut(s)	124, 687, 712, 756, 894
Cac8I	GCNNGC	4 cut(s)	355, 578, 710, 835
CfoI	GCGC	1 cut(s)	265
Cfr10I	RCCGGY	2 cut(s)	353, 379
Cfr13I	GGNCC	3 cut(s)	461, 462, 558
Cfr42I	CCGCGG	1 cut(s)	459
CseI	GACGC	2 cut(s)	753, 804
Csp6I	GTAC	1 cut(s)	171
CviAII	CATG	7 cut(s)	338, 395, 431, 452, 567, 615, 758
CviQI	GTAC	1 cut(s)	171
DdeI	CTNAG	3 cut(s)	59, 859, 920
DpnI	GATC	1 cut(s)	756
DpnII	GATC	1 cut(s)	754
EaeI	YGGCCR	1 cut(s)	381
EagI	CGGCCG	1 cut(s)	381
Eam1104I	CTCTTC	2 cut(s)	548, 730
EarI	CTCTTC	2 cut(s)	548, 730
Ecl136II	GAGCTC	1 cut(s)	367
EclXI	CGGCCG	1 cut(s)	381
Eco130I	CCWWGG	1 cut(s)	394
Eco24I	GRGCYC	2 cut(s)	369, 465
Eco32I	GATATC	1 cut(s)	11
Eco47III	AGCGCT	1 cut(s)	264
Eco52I	CGGCCG	1 cut(s)	381
Eco53kI	GAGCTC	1 cut(s)	367
Eco88I	CYCGRG	2 cut(s)	362, 408
EcoICRI	GAGCTC	1 cut(s)	367
EcoO109I	RGGNCCY	1 cut(s)	461
EcoRV	GATATC	1 cut(s)	11
EcoT14I	CCWWGG	1 cut(s)	394
EcoT22I	ATGCAT	1 cut(s)	432
EcoT38I	GRGCYC	2 cut(s)	369, 465
ErhI	CCWWGG	1 cut(s)	394
FaeI	CATG	7 cut(s)	341, 398, 434, 455, 570, 618, 761
FalI	AAGNNNNNCTT	2 cut(s)	294, 326
FaqI	GGGAC	1 cut(s)	756
FatI	CATG	7 cut(s)	337, 394, 430, 451, 566, 614, 757
FauI	CCCGC	2 cut(s)	434, 451
FblI	GTMKAC	1 cut(s)	420
Fnu4HI	GCNGC	6 cut(s)	351, 400, 456, 542, 619, 645
FokI	GGATG	4 cut(s)	314, 439, 829, 926
FriOI	GRGCYC	2 cut(s)	369, 465
Fsp4HI	GCNGC	6 cut(s)	351, 400, 456, 542, 619, 645
FspBI	CTAG	8 cut(s)	179, 503, 534, 573, 581, 641, 734, 800
GlaI	GCGC	1 cut(s)	264
GluI	GCNGC	6 cut(s)	351, 400, 456, 542, 619, 645
GsaI	CCCAGC	1 cut(s)	520
HaeII	RGCGCY	1 cut(s)	266
HaeIII	GGCC	4 cut(s)	383, 463, 559, 571
HapII	CCGG	4 cut(s)	354, 380, 424, 886
HgaI	GACGC	2 cut(s)	753, 804
HhaI	GCGC	1 cut(s)	265
Hin1I	GRCGYC	1 cut(s)	796
Hin1II	CATG	7 cut(s)	341, 398, 434, 455, 570, 618, 761
Hin6I	GCGC	1 cut(s)	263
HinP1I	GCGC	1 cut(s)	263
HincII	GTYRAC	1 cut(s)	631
HindII	GTYRAC	1 cut(s)	631
HinfI	GANTC	3 cut(s)	275, 627, 658
HpaII	CCGG	4 cut(s)	354, 380, 424, 886
HphI	GGTGA	1 cut(s)	49
Hpy166II	GTNNAC	3 cut(s)	325, 421, 631
Hpy188I	TCNGA	4 cut(s)	62, 95, 274, 923
Hpy188III	TCNNGA	2 cut(s)	29, 109
Hpy8I	GTNNAC	3 cut(s)	325, 421, 631
Hpy99I	CGWCG	2 cut(s)	671, 798
HpyAV	CCTTC	2 cut(s)	44, 934
HpyCH4III	ACNGT	3 cut(s)	128, 667, 898
HpyCH4V	TGCA	2 cut(s)	100, 430
HpyF10VI	GCNNNNNNNGC	4 cut(s)	347, 452, 577, 714
HpyF3I	CTNAG	3 cut(s)	59, 859, 920
Hsp92I	GRCGYC	1 cut(s)	796
Hsp92II	CATG	7 cut(s)	341, 398, 434, 455, 570, 618, 761
HspAI	GCGC	1 cut(s)	263
KroI	GCCGGC	1 cut(s)	353
KroNI	GCCGGC	1 cut(s)	355
KspI	CCGCGG	1 cut(s)	459
Kzo9I	GATC	1 cut(s)	754
LmnI	GCTCC	2 cut(s)	372, 761
Lsp1109I	GCAGC	3 cut(s)	362, 411, 553
LweI	GCATC	2 cut(s)	22, 417
MaeI	CTAG	8 cut(s)	179, 503, 534, 573, 581, 641, 734, 800
MaeIII	GTNAC	1 cut(s)	659
MalI	GATC	1 cut(s)	756
MboI	GATC	1 cut(s)	754
MboII	GAAGA	4 cut(s)	97, 565, 717, 735
MhlI	GDGCHC	5 cut(s)	300, 369, 465, 675, 882
MluCI	AATT	3 cut(s)	224, 524, 562
MlyI	GAGTC	3 cut(s)	284, 636, 667
MmeI	TCCRAC	1 cut(s)	255
Mph1103I	ATGCAT	1 cut(s)	432
MroNI	GCCGGC	1 cut(s)	353
MslI	CAYNNNNRTG	2 cut(s)	668, 875
MspA1I	CMGCKG	1 cut(s)	458
MspI	CCGG	4 cut(s)	354, 380, 424, 886
MspR9I	CCNGG	1 cut(s)	887
MvnI	CGCG	1 cut(s)	458
MwoI	GCNNNNNNNGC	4 cut(s)	347, 452, 577, 714
NaeI	GCCGGC	1 cut(s)	355
NciI	CCSGG	1 cut(s)	887
NcoI	CCATGG	1 cut(s)	394
NdeII	GATC	1 cut(s)	754
NgoMIV	GCCGGC	1 cut(s)	353
NlaIII	CATG	7 cut(s)	341, 398, 434, 455, 570, 618, 761
NlaIV	GGNNCC	3 cut(s)	462, 463, 891
NmuCI	GTSAC	1 cut(s)	659
NsiI	ATGCAT	1 cut(s)	432
NspI	RCATGY	1 cut(s)	434
OliI	CACNNNNGTG	1 cut(s)	668
PdiI	GCCGGC	1 cut(s)	355
PflMI	CCANNNNNTGG	1 cut(s)	567
PkrI	GCNGC	6 cut(s)	352, 401, 457, 543, 620, 646
PleI	GAGTC	3 cut(s)	283, 635, 666
PpsI	GAGTC	3 cut(s)	283, 635, 666
Psp124BI	GAGCTC	1 cut(s)	369
PspFI	CCCAGC	1 cut(s)	516
PspN4I	GGNNCC	3 cut(s)	462, 463, 891
PspOMI	GGGCCC	1 cut(s)	461
PspPI	GGNCC	3 cut(s)	461, 462, 558
RsaI	GTAC	1 cut(s)	172
RsaNI	GTAC	1 cut(s)	171
RseI	CAYNNNNRTG	2 cut(s)	668, 875
SacI	GAGCTC	1 cut(s)	369
SacII	CCGCGG	1 cut(s)	459
SatI	GCNGC	6 cut(s)	351, 400, 456, 542, 619, 645
Sau3AI	GATC	1 cut(s)	754
Sau96I	GGNCC	3 cut(s)	461, 462, 558
ScaI	AGTACT	1 cut(s)	172
SchI	GAGTC	3 cut(s)	284, 636, 667
ScrFI	CCNGG	1 cut(s)	887
SduI	GDGCHC	5 cut(s)	300, 369, 465, 675, 882
SfaNI	GCATC	2 cut(s)	22, 417
Sfr303I	CCGCGG	1 cut(s)	459
SgrBI	CCGCGG	1 cut(s)	459
SmiMI	CAYNNNNRTG	2 cut(s)	668, 875
SmlI	CTYRAG	1 cut(s)	932
SmoI	CTYRAG	1 cut(s)	932
SpeI	ACTAGT	1 cut(s)	733
Sse9I	AATT	3 cut(s)	224, 524, 562
SsiI	CCGC	9 cut(s)	35, 341, 441, 456, 458, 493, 619, 645, 650
SspMI	CTAG	8 cut(s)	179, 503, 534, 573, 581, 641, 734, 800
SstI	GAGCTC	1 cut(s)	369
StyD4I	CCNGG	1 cut(s)	885
StyI	CCWWGG	1 cut(s)	394
TaaI	ACNGT	3 cut(s)	128, 667, 898
TaqI	TCGA	2 cut(s)	162, 284
TaqII	GACCGA	1 cut(s)	940
TasI	AATT	3 cut(s)	224, 524, 562
TatI	WGTACW	1 cut(s)	170
TauI	GCSGC	3 cut(s)	458, 621, 647
TscAI	CASTG	5 cut(s)	131, 694, 719, 756, 901
TseFI	GTSAC	1 cut(s)	659
TseI	GCWGC	3 cut(s)	350, 399, 541
Tsp45I	GTSAC	1 cut(s)	659
TspDTI	ATGAA	2 cut(s)	273, 555
TspGWI	ACGGA	1 cut(s)	926
TspRI	CASTG	5 cut(s)	131, 694, 719, 756, 901
Van91I	CCANNNNNTGG	1 cut(s)	567
XceI	RCATGY	1 cut(s)	434
XmiI	GTMKAC	1 cut(s)	420
XspI	CTAG	8 cut(s)	179, 503, 534, 573, 581, 641, 734, 800
ZrmI	AGTACT	1 cut(s)	172
Zsp2I	ATGCAT	1 cut(s)	432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.