Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002662.1

Orthogroup ID

OG0004840

Physical Location & Seq

Genomic Coordinates Reverse (-)

24593 .. 28974

Gene Structure 4382 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002662.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

atgcccaaaagacctgaaaatagttttacttcagcattagaagtacaccatgttgcagtgctactcgtggtgacttttgagaatgagattagattccaagctaaagtggctacattcctactcgtggtgtcaaagagcttgccgagtttgtctgagattctgatcaagtacatagcattgaaggagcagaaagtgttggaccatgagaaggttcatgtggagcaagagaagaccagggttcagaagttgttgaatgggttgcagaactcgataaacggttacaatgccagtggaaacccccaaatctccaaagtttcggatgcggcaccgaaacagatgcaaatggctcctcaatcttgcctatctaatggcctacttggagagcatgggagagtggcctcttggcaagatacggtcgaccttcaccatggcgagatagctcgggtgtcggtctccgggatgcatgttgtaggtgggacctaccatgtcgtggggcccacctacgaggtcgttgcttatgcttggcggtatgtgatatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

179

Amino Acids

19.82

Weight (kDa)

7.92

Isoelectric Point (pI)

34.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004840)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g03870 FvH4_2g07542
rosa_chinensis	RchiOBHm_Chr5g0078211
rosa_multiflora	Rmu_sc0000777.1_g000012 Rmu_sc0002148.1_g000027 Rmu_sc0002538.1_g000027 Rmu_sc0002662.1_g000006 Rmu_sc0004277.1_g000060 Rmu_sc0004295.1_g000013 Rmu_sc0004607.1_g000001 Rmu_sc0006862.1_g000010 Rmu_sc0007315.1_g000010 Rmu_sc0007681.1_g000016 Rmu_sc0010265.1_g000010 Rmu_sc0024414.1_g000002 Rmu_sc0025517.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043280 Rroxscaffold_2G00103140 Rroxscaffold_2G00121790 Rroxscaffold_2G00123140 Rroxscaffold_3G00248480 Rroxscaffold_3G00267950 Rroxscaffold_5G00342740 Rroxscaffold_5G00374520 Rroxscaffold_6G00389230
rosa_rugosa	Rorug02G0190000 Rorug06G0080500 Rorug07G0304100
rosa_samantha	Rh4DG074400 Rh4DG074500
rosa_wichuraiana	Rw0G002790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	325
AccB7I	CCANNNNNTGG	1 cut(s)	490
AccI	GTMKAC	1 cut(s)	417
AciI	CCGC	2 cut(s)	323, 526
AcuI	CTGAAG	1 cut(s)	15
AfaI	GTAC	2 cut(s)	45, 170
AfiI	CCNNNNNNNGG	3 cut(s)	124, 208, 490
AgsI	TTSAA	2 cut(s)	181, 253
AjnI	CCWGG	1 cut(s)	233
AluBI	AGCT	3 cut(s)	101, 138, 440
AluI	AGCT	3 cut(s)	101, 138, 440
Alw26I	GTCTC	1 cut(s)	457
Ama87I	CYCGRG	1 cut(s)	441
AoxI	GGCC	3 cut(s)	370, 396, 494
ApaI	GGGCCC	1 cut(s)	498
AspS9I	GGNCC	4 cut(s)	199, 477, 494, 495
AsuC2I	CCSGG	1 cut(s)	457
AsuHPI	GGTGA	2 cut(s)	82, 416
AvaI	CYCGRG	1 cut(s)	441
AvaII	GGWCC	2 cut(s)	199, 477
BaeGI	GKGCMC	1 cut(s)	498
BanI	GGYRCC	1 cut(s)	325
BanII	GRGCYC	1 cut(s)	498
BauI	CACGAG	2 cut(s)	65, 122
BbsI	GAAGAC	1 cut(s)	236
BcgI	CGANNNNNNTGC	4 cut(s)	319, 353, 494, 528
BciT130I	CCWGG	1 cut(s)	235
BclI	TGATCA	1 cut(s)	162
BcnI	CCSGG	1 cut(s)	457
BcoDI	GTCTC	1 cut(s)	457
BisI	GCNGC	1 cut(s)	324
BlsI	GCNGC	1 cut(s)	325
Bme1390I	CCNGG	2 cut(s)	235, 457
Bme18I	GGWCC	2 cut(s)	199, 477
BmeT110I	CYCGRG	1 cut(s)	441
BmgT120I	GGNCC	4 cut(s)	199, 477, 494, 495
BmiI	GGNNCC	5 cut(s)	327, 348, 478, 495, 496
BmrFI	CCNGG	2 cut(s)	235, 457
BmsI	GCATC	3 cut(s)	310, 327, 450
BpiI	GAAGAC	1 cut(s)	236
BpuMI	CCSGG	1 cut(s)	457
BsaBI	GATNNNNATC	1 cut(s)	161
BsaI	GGTCTC	1 cut(s)	457
BsaJI	CCNNGG	2 cut(s)	234, 427
Bsc4I	CCNNNNNNNGG	3 cut(s)	124, 208, 490
Bse1I	ACTGG	1 cut(s)	288
Bse8I	GATNNNNATC	1 cut(s)	161
BseBI	CCWGG	1 cut(s)	235
BseDI	CCNNGG	2 cut(s)	234, 427
BseGI	GGATG	2 cut(s)	325, 465
BseJI	GATNNNNATC	1 cut(s)	161
BseLI	CCNNNNNNNGG	3 cut(s)	124, 208, 490
BseMII	CTCAG	1 cut(s)	144
BseNI	ACTGG	1 cut(s)	288
BseRI	GAGGAG	1 cut(s)	339
BseSI	GKGCMC	1 cut(s)	498
Bsh1285I	CGRYCG	1 cut(s)	417
BshFI	GGCC	3 cut(s)	372, 398, 496
BshNI	GGYRCC	1 cut(s)	325
BsiEI	CGRYCG	1 cut(s)	417
BsiHKCI	CYCGRG	1 cut(s)	441
BsiSI	CCGG	1 cut(s)	456
BslFI	GGGAC	1 cut(s)	490
BslI	CCNNNNNNNGG	3 cut(s)	124, 208, 490
BsmAI	GTCTC	1 cut(s)	457
BsmFI	GGGAC	1 cut(s)	490
BsnI	GGCC	3 cut(s)	372, 398, 496
Bso31I	GGTCTC	1 cut(s)	457
BsoBI	CYCGRG	1 cut(s)	441
Bsp120I	GGGCCC	1 cut(s)	494
Bsp1286I	GDGCHC	1 cut(s)	498
Bsp143I	GATC	1 cut(s)	162
Bsp19I	CCATGG	1 cut(s)	427
BspACI	CCGC	2 cut(s)	323, 526
BspANI	GGCC	3 cut(s)	372, 398, 496
BspCNI	CTCAG	1 cut(s)	145
BspLI	GGNNCC	5 cut(s)	327, 348, 478, 495, 496
BspT107I	GGYRCC	1 cut(s)	325
BspTNI	GGTCTC	1 cut(s)	457
BsrI	ACTGG	1 cut(s)	288
BssECI	CCNNGG	2 cut(s)	234, 427
BssMI	GATC	1 cut(s)	162
BssSI	CACGAG	2 cut(s)	65, 122
BssT1I	CCWWGG	1 cut(s)	427
Bst2BI	CACGAG	2 cut(s)	65, 122
Bst2UI	CCWGG	1 cut(s)	235
Bst4CI	ACNGT	2 cut(s)	278, 415
BstC8I	GCNNGC	1 cut(s)	140
BstDEI	CTNAG	1 cut(s)	153
BstDSI	CCRYGG	1 cut(s)	427
BstF5I	GGATG	2 cut(s)	325, 465
BstKTI	GATC	1 cut(s)	165
BstMAI	GTCTC	1 cut(s)	457
BstMBI	GATC	1 cut(s)	162
BstMCI	CGRYCG	1 cut(s)	417
BstMWI	GCNNNNNNNGC	1 cut(s)	107
BstNI	CCWGG	1 cut(s)	235
BstNSI	RCATGY	1 cut(s)	467
BstSCI	CCNGG	2 cut(s)	233, 455
BstSLI	GKGCMC	1 cut(s)	498
BstV2I	GAAGAC	1 cut(s)	236
BsuRI	GGCC	3 cut(s)	372, 398, 496
BtgI	CCRYGG	1 cut(s)	427
BtsCI	GGATG	2 cut(s)	325, 465
BtsI	GCAGTG	1 cut(s)	63
BtsIMutI	CAGTG	2 cut(s)	63, 295
Cac8I	GCNNGC	1 cut(s)	140
Cfr13I	GGNCC	4 cut(s)	199, 477, 494, 495
Csp6I	GTAC	2 cut(s)	44, 169
CspCI	CAANNNNNGTGG	2 cut(s)	271, 306
CviAII	CATG	7 cut(s)	50, 203, 215, 386, 428, 464, 485
CviJI	RGCY	8 cut(s)	101, 110, 138, 347, 372, 398, 440, 496
CviKI_1	RGCY	8 cut(s)	101, 110, 138, 347, 372, 398, 440, 496
CviQI	GTAC	2 cut(s)	44, 169
DdeI	CTNAG	1 cut(s)	153
DpnI	GATC	1 cut(s)	164
DpnII	GATC	1 cut(s)	162
Eco130I	CCWWGG	1 cut(s)	427
Eco24I	GRGCYC	1 cut(s)	498
Eco31I	GGTCTC	1 cut(s)	457
Eco47I	GGWCC	2 cut(s)	199, 477
Eco57I	CTGAAG	1 cut(s)	15
Eco88I	CYCGRG	1 cut(s)	441
EcoO109I	RGGNCCY	2 cut(s)	477, 494
EcoRII	CCWGG	1 cut(s)	233
EcoT14I	CCWWGG	1 cut(s)	427
EcoT22I	ATGCAT	1 cut(s)	465
EcoT38I	GRGCYC	1 cut(s)	498
ErhI	CCWWGG	1 cut(s)	427
FaeI	CATG	7 cut(s)	53, 206, 218, 389, 431, 467, 488
FaqI	GGGAC	1 cut(s)	490
FatI	CATG	7 cut(s)	49, 202, 214, 385, 427, 463, 484
FbaI	TGATCA	1 cut(s)	162
FblI	GTMKAC	1 cut(s)	417
Fnu4HI	GCNGC	1 cut(s)	324
FokI	GGATG	2 cut(s)	332, 472
FriOI	GRGCYC	1 cut(s)	498
Fsp4HI	GCNGC	1 cut(s)	324
GluI	GCNGC	1 cut(s)	324
HaeIII	GGCC	3 cut(s)	372, 398, 496
HapII	CCGG	1 cut(s)	456
Hin1II	CATG	7 cut(s)	53, 206, 218, 389, 431, 467, 488
HincII	GTYRAC	1 cut(s)	418
HindII	GTYRAC	1 cut(s)	418
HinfI	GANTC	2 cut(s)	93, 157
HpaII	CCGG	1 cut(s)	456
HphI	GGTGA	2 cut(s)	82, 416
Hpy166II	GTNNAC	2 cut(s)	46, 418
Hpy188I	TCNGA	4 cut(s)	154, 162, 243, 319
Hpy8I	GTNNAC	2 cut(s)	46, 418
HpyAV	CCTTC	3 cut(s)	175, 202, 431
HpyCH4III	ACNGT	2 cut(s)	278, 415
HpyCH4V	TGCA	4 cut(s)	56, 262, 340, 463
HpyF10VI	GCNNNNNNNGC	1 cut(s)	107
HpyF3I	CTNAG	1 cut(s)	153
Hsp92II	CATG	7 cut(s)	53, 206, 218, 389, 431, 467, 488
Ksp22I	TGATCA	1 cut(s)	162
Kzo9I	GATC	1 cut(s)	162
LmnI	GCTCC	3 cut(s)	184, 220, 352
LpnPI	CCDG	5 cut(s)	27, 220, 247, 301, 469
LweI	GCATC	3 cut(s)	310, 327, 450
MaeIII	GTNAC	2 cut(s)	70, 278
MalI	GATC	1 cut(s)	164
MboI	GATC	1 cut(s)	162
MboII	GAAGA	1 cut(s)	241
MhlI	GDGCHC	1 cut(s)	498
MmeI	TCCRAC	1 cut(s)	177
MnlI	CCTC	3 cut(s)	360, 409, 499
Mph1103I	ATGCAT	1 cut(s)	465
MspI	CCGG	1 cut(s)	456
MspR9I	CCNGG	2 cut(s)	235, 457
MvaI	CCWGG	1 cut(s)	235
MwoI	GCNNNNNNNGC	1 cut(s)	107
NciI	CCSGG	1 cut(s)	457
NcoI	CCATGG	1 cut(s)	427
NdeII	GATC	1 cut(s)	162
NlaIII	CATG	7 cut(s)	53, 206, 218, 389, 431, 467, 488
NlaIV	GGNNCC	5 cut(s)	327, 348, 478, 495, 496
NmeAIII	GCCGAG	1 cut(s)	168
NmuCI	GTSAC	1 cut(s)	70
NsiI	ATGCAT	1 cut(s)	465
NspI	RCATGY	1 cut(s)	467
PfeI	GAWTC	2 cut(s)	93, 157
PflMI	CCANNNNNTGG	1 cut(s)	490
PfoI	TCCNGGA	1 cut(s)	455
PkrI	GCNGC	1 cut(s)	325
PpuMI	RGGWCCY	1 cut(s)	477
Psp5II	RGGWCCY	1 cut(s)	477
Psp6I	CCWGG	1 cut(s)	233
PspGI	CCWGG	1 cut(s)	233
PspN4I	GGNNCC	5 cut(s)	327, 348, 478, 495, 496
PspOMI	GGGCCC	1 cut(s)	494
PspPI	GGNCC	4 cut(s)	199, 477, 494, 495
PspPPI	RGGWCCY	1 cut(s)	477
RsaI	GTAC	2 cut(s)	45, 170
RsaNI	GTAC	2 cut(s)	44, 169
SalI	GTCGAC	1 cut(s)	416
SatI	GCNGC	1 cut(s)	324
Sau3AI	GATC	1 cut(s)	162
Sau96I	GGNCC	4 cut(s)	199, 477, 494, 495
ScrFI	CCNGG	2 cut(s)	235, 457
SduI	GDGCHC	1 cut(s)	498
SfaNI	GCATC	3 cut(s)	310, 327, 450
SinI	GGWCC	2 cut(s)	199, 477
SsiI	CCGC	2 cut(s)	323, 526
StyD4I	CCNGG	2 cut(s)	233, 455
StyI	CCWWGG	1 cut(s)	427
TaaI	ACNGT	2 cut(s)	278, 415
TaqI	TCGA	2 cut(s)	269, 417
TaqII	GACCGA	1 cut(s)	439
TatI	WGTACW	2 cut(s)	43, 168
TauI	GCSGC	1 cut(s)	326
TfiI	GAWTC	2 cut(s)	93, 157
TscAI	CASTG	2 cut(s)	63, 295
TseFI	GTSAC	1 cut(s)	70
Tsp45I	GTSAC	1 cut(s)	70
TspDTI	ATGAA	1 cut(s)	203
TspRI	CASTG	2 cut(s)	63, 295
Van91I	CCANNNNNTGG	1 cut(s)	490
VpaK11BI	GGWCC	2 cut(s)	199, 477
XceI	RCATGY	1 cut(s)	467
XmiI	GTMKAC	1 cut(s)	417
Zsp2I	ATGCAT	1 cut(s)	465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.