Rw0G002790

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00088
OG0004840
Physical Location & Seq
Reverse (-)
18387 .. 20401
2015 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G002790.1

Sequence Viewer

Length: 900 bp
ATGAGAACCGGCCTTGAGACAGTAGTACCATACTTTCTTTTTGACAAAAAGGTAGGGCTTCCAAGGTTGGAGAGATTGATTATTATCAATGAACTACCGAAGCTCACAACAATTTGGCACACCCAACTTGCTCCAAACTCTTTCCACAAACTGGAAGACGTTACAGTGCAACAATGCAATGGTCTTAAATATATTTTTCAAGTCTCCATCATAGCCAGTGTTTTTCAGCAGCTACAAAAGTTGATAGGAAAGGAATGTGTAGTGGAGGAAATAGTTTCCCAGGAAGAGGGCGTAGAAAAATTAATGCCTGATCAGTTCTTCCCAGAGCTAACATGTTTGGAATTTACAAGTCTATTCCAACTTGAGAGATTCTATCTAAAGATGCCTGCTATCAACTGGCCACTAAAAACATTAGTGTTGTCTGATTGTCAGAAAGTGGATATCTTTACCGCGGAAGTTTCAGGCCTTCAGAAAACACATGACTTGGGGAATCTGCGTACTCGGGTTAAACAATATCATGTTCTATTTGAGAAGAGTTCATTTTCCAAACTGGAAGTTTTGACCTTCGGCCCCGCGAACATCTGGTACGGTCTACCTGCCCATGAGAAAGCTCTTTTTCCTGCTACCAGTACAGATGGGTCCCTTCTACATTTGAGAACGTTGAGGGTACATGGAATGGATAAGTTTATGCGTCTCTGGGAGAACACCAAACCTGCAGCTGGCTCAGCTTTTCCAAAGATGGAAACTCTTGAGCGATCAAAGACCGCCAATTGCTTGGGAAGTCAAAATGTTCAACGGGATGAATATGATGGATCCAGAATTGATGAAACTCGCTCAGGAGCAGATGAGTCGGATGTTGCCGACCGATTTCGCCAGGATGCAACAACAGATGATGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

299

Amino Acids

34.12

Weight (kDa)

5.86

Isoelectric Point (pI)

39.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_RPS2 PF23247 22 - 86 2.5e-10 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 604, 721
AccB7I CCANNNNNTGG 1 cut(s) 151
AccI GTMKAC 1 cut(s) 592
AccII CGCG 2 cut(s) 452, 575
AciI CCGC 4 cut(s) 450, 452, 573, 765
AclI AACGTT 1 cut(s) 659
AclWI GGATC 2 cut(s) 807, 820
AcoI YGGCCR 1 cut(s) 398
AcsI RAATTY 1 cut(s) 341
AcuI CTGAAG 1 cut(s) 452
AfaI GTAC 5 cut(s) 27, 499, 587, 631, 669
AfiI CCNNNNNNNGG 3 cut(s) 151, 286, 719
AflIII ACRYGT 1 cut(s) 332
AgsI TTSAA 2 cut(s) 200, 794
AjnI CCWGG 2 cut(s) 279, 873
AluBI AGCT 6 cut(s) 103, 232, 328, 611, 719, 728
AluI AGCT 6 cut(s) 103, 232, 328, 611, 719, 728
Alw26I GTCTC 3 cut(s) 11, 208, 698
AlwI GGATC 2 cut(s) 807, 820
Ama87I CYCGRG 1 cut(s) 501
AoxI GGCC 4 cut(s) 10, 398, 463, 568
ApeKI GCWGC 2 cut(s) 229, 716
ApoI RAATTY 1 cut(s) 341
AseI ATTAAT 1 cut(s) 302
AspS9I GGNCC 2 cut(s) 569, 639
AvaI CYCGRG 1 cut(s) 501
AvaII GGWCC 1 cut(s) 639
BaeI ACNNNNGTAYC 2 cut(s) 9, 42
BalI TGGCCA 1 cut(s) 400
BamHI GGATCC 1 cut(s) 812
BbsI GAAGAC 1 cut(s) 162
BbvI GCAGC 2 cut(s) 241, 728
BccI CCATC 5 cut(s) 215, 629, 733, 803, 887
BcgI CGANNNNNNTGC 2 cut(s) 831, 865
BciT130I CCWGG 2 cut(s) 281, 875
BclI TGATCA 1 cut(s) 310
BcoDI GTCTC 3 cut(s) 11, 208, 698
BfmI CTRYAG 1 cut(s) 714
BfuAI ACCTGC 2 cut(s) 604, 721
BisI GCNGC 2 cut(s) 230, 717
BlpI GCTNAGC 1 cut(s) 724
BlsI GCNGC 2 cut(s) 231, 718
Bme1390I CCNGG 2 cut(s) 281, 875
Bme18I GGWCC 1 cut(s) 639
BmeT110I CYCGRG 1 cut(s) 501
BmgT120I GGNCC 2 cut(s) 569, 639
BmiI GGNNCC 4 cut(s) 571, 640, 641, 814
BmrFI CCNGG 2 cut(s) 281, 875
BmsI GCATC 2 cut(s) 372, 868
BpiI GAAGAC 1 cut(s) 162
Bpu10I CCTNAGC 1 cut(s) 835
Bpu1102I GCTNAGC 1 cut(s) 724
BpuEI CTTGAG 3 cut(s) 35, 383, 770
BsaBI GATNNNNATC 1 cut(s) 83
BsaJI CCNNGG 3 cut(s) 62, 279, 450
Bsc4I CCNNNNNNNGG 3 cut(s) 151, 286, 719
Bse118I RCCGGY 1 cut(s) 8
Bse1I ACTGG 5 cut(s) 156, 216, 401, 555, 627
Bse3DI GCAATG 1 cut(s) 184
Bse8I GATNNNNATC 1 cut(s) 83
BseBI CCWGG 2 cut(s) 281, 875
BseDI CCNNGG 3 cut(s) 62, 279, 450
BseGI GGATG 3 cut(s) 805, 859, 883
BseJI GATNNNNATC 1 cut(s) 83
BseLI CCNNNNNNNGG 3 cut(s) 151, 286, 719
BseMI GCAATG 1 cut(s) 184
BseMII CTCAG 2 cut(s) 738, 849
BseNI ACTGG 5 cut(s) 156, 216, 401, 555, 627
BseXI GCAGC 2 cut(s) 241, 728
Bsh1236I CGCG 2 cut(s) 452, 575
Bsh1285I CGRYCG 1 cut(s) 865
BshFI GGCC 4 cut(s) 12, 400, 465, 570
BsiEI CGRYCG 1 cut(s) 865
BsiHKCI CYCGRG 1 cut(s) 501
BsiSI CCGG 1 cut(s) 9
BslFI GGGAC 1 cut(s) 625
BslI CCNNNNNNNGG 3 cut(s) 151, 286, 719
BsmAI GTCTC 3 cut(s) 11, 208, 698
BsmBI CGTCTC 1 cut(s) 698
BsmFI GGGAC 1 cut(s) 625
BsnI GGCC 4 cut(s) 12, 400, 465, 570
BsoBI CYCGRG 1 cut(s) 501
Bsp143I GATC 3 cut(s) 310, 755, 812
Bsp1720I GCTNAGC 1 cut(s) 724
BspACI CCGC 4 cut(s) 450, 452, 573, 765
BspANI GGCC 4 cut(s) 12, 400, 465, 570
BspCNI CTCAG 2 cut(s) 737, 848
BspFNI CGCG 2 cut(s) 452, 575
BspLI GGNNCC 4 cut(s) 571, 640, 641, 814
BspMAI CTGCAG 1 cut(s) 718
BspMI ACCTGC 2 cut(s) 604, 721
BspPI GGATC 2 cut(s) 807, 820
BsrDI GCAATG 1 cut(s) 184
BsrFI RCCGGY 1 cut(s) 8
BsrI ACTGG 5 cut(s) 156, 216, 401, 555, 627
BssAI RCCGGY 1 cut(s) 8
BssECI CCNNGG 3 cut(s) 62, 279, 450
BssMI GATC 3 cut(s) 310, 755, 812
BssT1I CCWWGG 1 cut(s) 62
Bst2UI CCWGG 2 cut(s) 281, 875
Bst4CI ACNGT 3 cut(s) 22, 166, 590
Bst6I CTCTTC 2 cut(s) 279, 527
BstC8I GCNNGC 2 cut(s) 387, 721
BstDEI CTNAG 2 cut(s) 724, 835
BstDSI CCRYGG 1 cut(s) 450
BstF5I GGATG 3 cut(s) 805, 859, 883
BstFNI CGCG 2 cut(s) 452, 575
BstKTI GATC 3 cut(s) 313, 758, 815
BstMAI GTCTC 3 cut(s) 11, 208, 698
BstMBI GATC 3 cut(s) 310, 755, 812
BstMCI CGRYCG 1 cut(s) 865
BstMWI GCNNNNNNNGC 1 cut(s) 725
BstNI CCWGG 2 cut(s) 281, 875
BstNSI RCATGY 1 cut(s) 336
BstSCI CCNGG 2 cut(s) 279, 873
BstSFI CTRYAG 1 cut(s) 714
BstUI CGCG 2 cut(s) 452, 575
BstV1I GCAGC 2 cut(s) 241, 728
BstV2I GAAGAC 1 cut(s) 162
BstX2I RGATCY 1 cut(s) 812
BstXI CCANNNNNNTGG 1 cut(s) 775
BstYI RGATCY 1 cut(s) 812
BsuRI GGCC 4 cut(s) 12, 400, 465, 570
BtgI CCRYGG 1 cut(s) 450
BtsCI GGATG 3 cut(s) 805, 859, 883
BtsIMutI CAGTG 2 cut(s) 171, 223
BveI ACCTGC 2 cut(s) 604, 721
Cac8I GCNNGC 2 cut(s) 387, 721
Cfr10I RCCGGY 1 cut(s) 8
Cfr13I GGNCC 2 cut(s) 569, 639
Cfr42I CCGCGG 1 cut(s) 453
CseI GACGC 1 cut(s) 680
Csp6I GTAC 5 cut(s) 26, 498, 586, 630, 668
CviAII CATG 5 cut(s) 333, 479, 518, 602, 671
CviQI GTAC 5 cut(s) 26, 498, 586, 630, 668
DdeI CTNAG 2 cut(s) 724, 835
DpnI GATC 3 cut(s) 312, 757, 814
DpnII GATC 3 cut(s) 310, 755, 812
EaeI YGGCCR 1 cut(s) 398
Eam1104I CTCTTC 2 cut(s) 279, 527
EarI CTCTTC 2 cut(s) 279, 527
Eco130I CCWWGG 1 cut(s) 62
Eco147I AGGCCT 1 cut(s) 465
Eco32I GATATC 1 cut(s) 442
Eco47I GGWCC 1 cut(s) 639
Eco57I CTGAAG 1 cut(s) 452
Eco88I CYCGRG 1 cut(s) 501
EcoO109I RGGNCCY 1 cut(s) 639
EcoRII CCWGG 2 cut(s) 279, 873
EcoRV GATATC 1 cut(s) 442
EcoT14I CCWWGG 1 cut(s) 62
ErhI CCWWGG 1 cut(s) 62
Esp3I CGTCTC 1 cut(s) 698
FaeI CATG 5 cut(s) 336, 482, 521, 605, 674
FaqI GGGAC 1 cut(s) 625
FatI CATG 5 cut(s) 332, 478, 517, 601, 670
FauI CCCGC 1 cut(s) 580
FbaI TGATCA 1 cut(s) 310
FblI GTMKAC 1 cut(s) 592
Fnu4HI GCNGC 2 cut(s) 230, 717
FokI GGATG 3 cut(s) 812, 866, 890
Fsp4HI GCNGC 2 cut(s) 230, 717
GluI GCNGC 2 cut(s) 230, 717
HaeIII GGCC 4 cut(s) 12, 400, 465, 570
HapII CCGG 1 cut(s) 9
HgaI GACGC 1 cut(s) 680
Hin1II CATG 5 cut(s) 336, 482, 521, 605, 674
HinfI GANTC 3 cut(s) 369, 490, 848
HpaII CCGG 1 cut(s) 9
Hpy166II GTNNAC 1 cut(s) 593
Hpy188I TCNGA 4 cut(s) 424, 432, 471, 853
Hpy188III TCNNGA 3 cut(s) 749, 816, 837
Hpy8I GTNNAC 1 cut(s) 593
HpyAV CCTTC 3 cut(s) 476, 574, 653
HpyCH4III ACNGT 3 cut(s) 22, 166, 590
HpyCH4IV ACGT 2 cut(s) 159, 659
HpyCH4V TGCA 4 cut(s) 169, 177, 716, 881
HpyF10VI GCNNNNNNNGC 1 cut(s) 725
HpyF3I CTNAG 2 cut(s) 724, 835
HpySE526I ACGT 2 cut(s) 159, 659
Hsp92II CATG 5 cut(s) 336, 482, 521, 605, 674
KflI GGGWCCC 1 cut(s) 639
Ksp22I TGATCA 1 cut(s) 310
KspI CCGCGG 1 cut(s) 453
Kzo9I GATC 3 cut(s) 310, 755, 812
LmnI GCTCC 2 cut(s) 136, 839
Lsp1109I GCAGC 2 cut(s) 241, 728
LweI GCATC 2 cut(s) 372, 868
MaeII ACGT 2 cut(s) 159, 659
MaeIII GTNAC 1 cut(s) 160
MalI GATC 3 cut(s) 312, 757, 814
MboI GATC 3 cut(s) 310, 755, 812
MboII GAAGA 4 cut(s) 167, 296, 310, 544
MfeI CAATTG 1 cut(s) 769
MflI RGATCY 1 cut(s) 812
MlsI TGGCCA 1 cut(s) 400
MluCI AATT 5 cut(s) 111, 299, 341, 769, 819
MluNI TGGCCA 1 cut(s) 400
MlyI GAGTC 1 cut(s) 857
MmeI TCCRAC 3 cut(s) 48, 382, 831
MnlI CCTC 3 cut(s) 259, 280, 657
Mox20I TGGCCA 1 cut(s) 400
MscI TGGCCA 1 cut(s) 400
MseI TTAA 3 cut(s) 186, 302, 507
Msp20I TGGCCA 1 cut(s) 400
MspA1I CMGCKG 2 cut(s) 452, 719
MspI CCGG 1 cut(s) 9
MspR9I CCNGG 2 cut(s) 281, 875
MunI CAATTG 1 cut(s) 769
MvaI CCWGG 2 cut(s) 281, 875
MvnI CGCG 2 cut(s) 452, 575
MwoI GCNNNNNNNGC 1 cut(s) 725
NdeII GATC 3 cut(s) 310, 755, 812
NlaIII CATG 5 cut(s) 336, 482, 521, 605, 674
NlaIV GGNNCC 4 cut(s) 571, 640, 641, 814
NspI RCATGY 1 cut(s) 336
PceI AGGCCT 1 cut(s) 465
PciI ACATGT 1 cut(s) 332
PfeI GAWTC 2 cut(s) 369, 490
PflMI CCANNNNNTGG 1 cut(s) 151
PkrI GCNGC 2 cut(s) 231, 718
PleI GAGTC 1 cut(s) 856
PpsI GAGTC 1 cut(s) 856
PpuMI RGGWCCY 1 cut(s) 639
PscI ACATGT 1 cut(s) 332
PshBI ATTAAT 1 cut(s) 302
Psp1406I AACGTT 1 cut(s) 659
Psp5II RGGWCCY 1 cut(s) 639
Psp6I CCWGG 2 cut(s) 279, 873
PspGI CCWGG 2 cut(s) 279, 873
PspN4I GGNNCC 4 cut(s) 571, 640, 641, 814
PspPI GGNCC 2 cut(s) 569, 639
PspPPI RGGWCCY 1 cut(s) 639
PsrI GAACNNNNNNTAC 2 cut(s) 569, 601
PstI CTGCAG 1 cut(s) 718
PsuI RGATCY 1 cut(s) 812
PvuII CAGCTG 1 cut(s) 719
RsaI GTAC 5 cut(s) 27, 499, 587, 631, 669
RsaNI GTAC 5 cut(s) 26, 498, 586, 630, 668
SacII CCGCGG 1 cut(s) 453
SaqAI TTAA 3 cut(s) 186, 302, 507
SatI GCNGC 2 cut(s) 230, 717
Sau3AI GATC 3 cut(s) 310, 755, 812
Sau96I GGNCC 2 cut(s) 569, 639
SchI GAGTC 1 cut(s) 857
ScrFI CCNGG 2 cut(s) 281, 875
SfaNI GCATC 2 cut(s) 372, 868
SfcI CTRYAG 1 cut(s) 714
Sfr303I CCGCGG 1 cut(s) 453
SgrBI CCGCGG 1 cut(s) 453
SinI GGWCC 1 cut(s) 639
SmlI CTYRAG 3 cut(s) 14, 362, 749
SmoI CTYRAG 3 cut(s) 14, 362, 749
Sse9I AATT 5 cut(s) 111, 299, 341, 769, 819
SseBI AGGCCT 1 cut(s) 465
SsiI CCGC 4 cut(s) 450, 452, 573, 765
StuI AGGCCT 1 cut(s) 465
StyD4I CCNGG 2 cut(s) 279, 873
StyI CCWWGG 1 cut(s) 62
TaaI ACNGT 3 cut(s) 22, 166, 590
TaiI ACGT 2 cut(s) 162, 662
TaqII GACCGA 1 cut(s) 879
TasI AATT 5 cut(s) 111, 299, 341, 769, 819
TatI WGTACW 1 cut(s) 629
TfiI GAWTC 2 cut(s) 369, 490
Tru1I TTAA 3 cut(s) 186, 302, 507
Tru9I TTAA 3 cut(s) 186, 302, 507
TscAI CASTG 2 cut(s) 171, 223
TseI GCWGC 2 cut(s) 229, 716
TspDTI ATGAA 4 cut(s) 105, 528, 816, 840
TspRI CASTG 2 cut(s) 171, 223
Van91I CCANNNNNTGG 1 cut(s) 151
VpaK11BI GGWCC 1 cut(s) 639
VspI ATTAAT 1 cut(s) 302
XapI RAATTY 1 cut(s) 341
XceI RCATGY 1 cut(s) 336
XmiI GTMKAC 1 cut(s) 592
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.