Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004295.1

Orthogroup ID

OG0004840

Physical Location & Seq

Genomic Coordinates Reverse (-)

42612 .. 45266

Gene Structure 2655 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004295.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

atgtcttctggcaacatccctatgatcggaagcatggttgtgctaagcaagatcgacgacagggttctgaacggtggtggtgcaaagggtaggatgctggaccggcgggattcgggatcgggtcttcacaatgtgcactgtgacggtgtggggcgtggctgtttgggtcgaaacggcgggtggttgtggcagcgtagatcggggccgcaagggttgtggcagagcgggtcgggtggaggcgctgggcttgtgatatacgacatgtcatcaagggtgatgggccaggaccaagcctgcttgattggctctggagatggactattccttctggatgctcttaggcttactattttgggctggggtgttttgccctacgcctatcctatgctaactctttgtgtctctaatttctcacgaggcggcgccgatagcttcgtcgacgatcctcacaactggagccgctccataaactccgatattgaccagccctatggttttgaagacaacgatgaagacgatgaagacggagatgacgatgatgaggaagataggagtttggatctgttggtgaggtttgttcagaatgtatttaagaaggtgtcgaagcgagccaggagagtcgtacgatcggttcttcctattgcaatccccaccaagttggtggggttttctgttaatggggtgccaatgctggcgtttttgtgggtgttgaaggcatttcttgagagcatgggagggtggcctccaggcgagatattggccgacctccaccatagagaggtagctagggtgtcggtctaccggatgcatgtcgtaagagggactaaccatgtcgcggggcccacctacgaggtcgttgcttatgcttggtggtatgtaatataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

294

Amino Acids

32.26

Weight (kDa)

5.63

Isoelectric Point (pI)

49.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004840)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g03870 FvH4_2g07542
rosa_chinensis	RchiOBHm_Chr5g0078211
rosa_multiflora	Rmu_sc0000777.1_g000012 Rmu_sc0002148.1_g000027 Rmu_sc0002538.1_g000027 Rmu_sc0002662.1_g000006 Rmu_sc0004277.1_g000060 Rmu_sc0004295.1_g000013 Rmu_sc0004607.1_g000001 Rmu_sc0006862.1_g000010 Rmu_sc0007315.1_g000010 Rmu_sc0007681.1_g000016 Rmu_sc0010265.1_g000010 Rmu_sc0024414.1_g000002 Rmu_sc0025517.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043280 Rroxscaffold_2G00103140 Rroxscaffold_2G00121790 Rroxscaffold_2G00123140 Rroxscaffold_3G00248480 Rroxscaffold_3G00267950 Rroxscaffold_5G00342740 Rroxscaffold_5G00374520 Rroxscaffold_6G00389230
rosa_rugosa	Rorug02G0190000 Rorug06G0080500 Rorug07G0304100
rosa_samantha	Rh4DG074400 Rh4DG074500
rosa_wichuraiana	Rw0G002790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	422, 682
AccBSI	CCGCTC	2 cut(s)	225, 462
AccI	GTMKAC	2 cut(s)	438, 798
AccII	CGCG	1 cut(s)	836
AciI	CCGC	7 cut(s)	106, 177, 206, 225, 420, 460, 836
AclWI	GGATC	3 cut(s)	124, 437, 567
AcoI	YGGCCR	1 cut(s)	759
AcyI	GRCGYC	1 cut(s)	423
AdeI	CACNNNGTG	1 cut(s)	133
AfaI	GTAC	1 cut(s)	624
AfiI	CCNNNNNNNGG	3 cut(s)	26, 778, 835
AflIII	ACRYGT	1 cut(s)	261
AgsI	TTSAA	2 cut(s)	500, 712
AjnI	CCWGG	3 cut(s)	282, 611, 745
AluBI	AGCT	2 cut(s)	432, 785
AluI	AGCT	2 cut(s)	432, 785
Alw21I	GWGCWC	1 cut(s)	138
Alw26I	GTCTC	1 cut(s)	406
Alw44I	GTGCAC	1 cut(s)	134
AlwI	GGATC	3 cut(s)	124, 437, 567
AoxI	GGCC	5 cut(s)	203, 280, 740, 759, 839
ApaI	GGGCCC	1 cut(s)	843
ApaLI	GTGCAC	1 cut(s)	134
ApeKI	GCWGC	1 cut(s)	190
AspLEI	GCGC	2 cut(s)	242, 425
AspS9I	GGNCC	6 cut(s)	100, 203, 280, 286, 839, 840
AsuHPI	GGTGA	2 cut(s)	286, 580
AvaII	GGWCC	2 cut(s)	100, 286
BaeGI	GKGCMC	2 cut(s)	138, 843
BanI	GGYRCC	2 cut(s)	422, 682
BanII	GRGCYC	1 cut(s)	843
BauI	CACGAG	1 cut(s)	414
BbsI	GAAGAC	4 cut(s)	116, 507, 519, 528
Bbv12I	GWGCWC	1 cut(s)	138
BbvI	GCAGC	1 cut(s)	202
BccI	CCATC	2 cut(s)	271, 308
BceAI	ACGGC	1 cut(s)	190
BcgI	CGANNNNNNTGC	2 cut(s)	839, 873
BciT130I	CCWGG	3 cut(s)	284, 613, 747
BcoDI	GTCTC	1 cut(s)	406
BfaI	CTAG	1 cut(s)	786
BfoI	RGCGCY	2 cut(s)	243, 426
BisI	GCNGC	4 cut(s)	191, 206, 421, 460
BlpI	GCTNAGC	1 cut(s)	44
BlsI	GCNGC	4 cut(s)	192, 207, 422, 461
Bme1390I	CCNGG	3 cut(s)	284, 613, 747
Bme18I	GGWCC	2 cut(s)	100, 286
BmgT120I	GGNCC	6 cut(s)	100, 203, 280, 286, 839, 840
BmiI	GGNNCC	6 cut(s)	204, 424, 458, 684, 840, 841
BmrFI	CCNGG	3 cut(s)	284, 613, 747
BmsI	GCATC	3 cut(s)	84, 322, 795
BpiI	GAAGAC	4 cut(s)	116, 507, 519, 528
BpmI	CTGGAG	3 cut(s)	330, 475, 729
Bpu1102I	GCTNAGC	1 cut(s)	44
BpuEI	CTTGAG	1 cut(s)	743
BsaHI	GRCGYC	1 cut(s)	423
BsaWI	WCCGGW	1 cut(s)	801
Bsc4I	CCNNNNNNNGG	3 cut(s)	26, 778, 835
Bse118I	RCCGGY	1 cut(s)	102
Bse1I	ACTGG	1 cut(s)	458
BseBI	CCWGG	3 cut(s)	284, 613, 747
BseGI	GGATG	4 cut(s)	15, 99, 337, 810
BseLI	CCNNNNNNNGG	3 cut(s)	26, 778, 835
BseNI	ACTGG	1 cut(s)	458
BseSI	GKGCMC	2 cut(s)	138, 843
BseXI	GCAGC	1 cut(s)	202
BseYI	CCCAGC	2 cut(s)	242, 357
Bsh1236I	CGCG	1 cut(s)	836
Bsh1285I	CGRYCG	1 cut(s)	629
BshFI	GGCC	5 cut(s)	205, 282, 742, 761, 841
BshNI	GGYRCC	2 cut(s)	422, 682
BsiEI	CGRYCG	1 cut(s)	629
BsiHKAI	GWGCWC	1 cut(s)	138
BsiSI	CCGG	2 cut(s)	103, 802
BsiWI	CGTACG	1 cut(s)	622
BslFI	GGGAC	1 cut(s)	835
BslI	CCNNNNNNNGG	3 cut(s)	26, 778, 835
BsmAI	GTCTC	1 cut(s)	406
BsmFI	GGGAC	1 cut(s)	835
BsnI	GGCC	5 cut(s)	205, 282, 742, 761, 841
Bsp120I	GGGCCC	1 cut(s)	839
Bsp1286I	GDGCHC	2 cut(s)	138, 843
Bsp143I	GATC	7 cut(s)	24, 51, 116, 197, 442, 559, 626
Bsp1720I	GCTNAGC	1 cut(s)	44
BspACI	CCGC	7 cut(s)	106, 177, 206, 225, 420, 460, 836
BspANI	GGCC	5 cut(s)	205, 282, 742, 761, 841
BspFNI	CGCG	1 cut(s)	836
BspLI	GGNNCC	6 cut(s)	204, 424, 458, 684, 840, 841
BspPI	GGATC	3 cut(s)	124, 437, 567
BspT107I	GGYRCC	2 cut(s)	422, 682
BsrBI	CCGCTC	2 cut(s)	225, 462
BsrFI	RCCGGY	1 cut(s)	102
BsrI	ACTGG	1 cut(s)	458
BssAI	RCCGGY	1 cut(s)	102
BssMI	GATC	7 cut(s)	24, 51, 116, 197, 442, 559, 626
BssNI	GRCGYC	1 cut(s)	423
BssSI	CACGAG	1 cut(s)	414
Bst2BI	CACGAG	1 cut(s)	414
Bst2UI	CCWGG	3 cut(s)	284, 613, 747
Bst4CI	ACNGT	3 cut(s)	74, 140, 146
BstACI	GRCGYC	1 cut(s)	423
BstC8I	GCNNGC	3 cut(s)	295, 609, 693
BstDEI	CTNAG	2 cut(s)	44, 338
BstF5I	GGATG	4 cut(s)	15, 99, 337, 810
BstFNI	CGCG	1 cut(s)	836
BstH2I	RGCGCY	2 cut(s)	243, 426
BstHHI	GCGC	2 cut(s)	242, 425
BstKTI	GATC	7 cut(s)	27, 54, 119, 200, 445, 562, 629
BstMAI	GTCTC	1 cut(s)	406
BstMBI	GATC	7 cut(s)	24, 51, 116, 197, 442, 559, 626
BstMCI	CGRYCG	1 cut(s)	629
BstMWI	GCNNNNNNNGC	3 cut(s)	103, 303, 429
BstNI	CCWGG	3 cut(s)	284, 613, 747
BstNSI	RCATGY	2 cut(s)	265, 812
BstSCI	CCNGG	3 cut(s)	282, 611, 745
BstSLI	GKGCMC	2 cut(s)	138, 843
BstUI	CGCG	1 cut(s)	836
BstV1I	GCAGC	1 cut(s)	202
BstV2I	GAAGAC	4 cut(s)	116, 507, 519, 528
BstX2I	RGATCY	1 cut(s)	559
BstXI	CCANNNNNNTGG	3 cut(s)	491, 658, 661
BstYI	RGATCY	1 cut(s)	559
BsuRI	GGCC	5 cut(s)	205, 282, 742, 761, 841
BtsCI	GGATG	4 cut(s)	15, 99, 337, 810
BtsIMutI	CAGTG	1 cut(s)	136
Cac8I	GCNNGC	3 cut(s)	295, 609, 693
CfoI	GCGC	2 cut(s)	242, 425
Cfr10I	RCCGGY	1 cut(s)	102
Cfr13I	GGNCC	6 cut(s)	100, 203, 280, 286, 839, 840
Csp6I	GTAC	1 cut(s)	623
CspCI	CAANNNNNGTGG	2 cut(s)	197, 232
CviAII	CATG	5 cut(s)	34, 262, 730, 809, 830
CviQI	GTAC	1 cut(s)	623
DdeI	CTNAG	2 cut(s)	44, 338
DinI	GGCGCC	1 cut(s)	424
DpnI	GATC	7 cut(s)	26, 53, 118, 199, 444, 561, 628
DpnII	GATC	7 cut(s)	24, 51, 116, 197, 442, 559, 626
DraIII	CACNNNGTG	1 cut(s)	133
EaeI	YGGCCR	1 cut(s)	759
Eco24I	GRGCYC	1 cut(s)	843
Eco47I	GGWCC	2 cut(s)	100, 286
EcoO109I	RGGNCCY	1 cut(s)	839
EcoRII	CCWGG	3 cut(s)	282, 611, 745
EcoT22I	ATGCAT	1 cut(s)	810
EcoT38I	GRGCYC	1 cut(s)	843
EgeI	GGCGCC	1 cut(s)	424
EheI	GGCGCC	1 cut(s)	424
FaeI	CATG	5 cut(s)	37, 265, 733, 812, 833
FaqI	GGGAC	1 cut(s)	835
FatI	CATG	5 cut(s)	33, 261, 729, 808, 829
FauI	CCCGC	4 cut(s)	99, 170, 218, 829
FblI	GTMKAC	2 cut(s)	438, 798
Fnu4HI	GCNGC	4 cut(s)	191, 206, 421, 460
FokI	GGATG	4 cut(s)	2, 106, 344, 817
FriOI	GRGCYC	1 cut(s)	843
Fsp4HI	GCNGC	4 cut(s)	191, 206, 421, 460
FspBI	CTAG	1 cut(s)	786
GlaI	GCGC	2 cut(s)	241, 424
GluI	GCNGC	4 cut(s)	191, 206, 421, 460
GsaI	CCCAGC	2 cut(s)	246, 361
GsuI	CTGGAG	3 cut(s)	330, 475, 729
HaeII	RGCGCY	2 cut(s)	243, 426
HaeIII	GGCC	5 cut(s)	205, 282, 742, 761, 841
HapII	CCGG	2 cut(s)	103, 802
HhaI	GCGC	2 cut(s)	242, 425
Hin1I	GRCGYC	1 cut(s)	423
Hin1II	CATG	5 cut(s)	37, 265, 733, 812, 833
Hin6I	GCGC	2 cut(s)	240, 423
HinP1I	GCGC	2 cut(s)	240, 423
HincII	GTYRAC	1 cut(s)	439
HindII	GTYRAC	1 cut(s)	439
HinfI	GANTC	2 cut(s)	110, 618
HpaII	CCGG	2 cut(s)	103, 802
HphI	GGTGA	2 cut(s)	286, 580
Hpy166II	GTNNAC	3 cut(s)	136, 439, 799
Hpy188I	TCNGA	4 cut(s)	29, 69, 475, 582
Hpy188III	TCNNGA	5 cut(s)	114, 309, 329, 414, 722
Hpy8I	GTNNAC	3 cut(s)	136, 439, 799
Hpy99I	CGWCG	3 cut(s)	59, 440, 443
HpyAV	CCTTC	3 cut(s)	335, 589, 706
HpyCH4III	ACNGT	3 cut(s)	74, 140, 146
HpyCH4V	TGCA	4 cut(s)	83, 136, 644, 808
HpyF10VI	GCNNNNNNNGC	3 cut(s)	103, 303, 429
HpyF3I	CTNAG	2 cut(s)	44, 338
Hsp92I	GRCGYC	1 cut(s)	423
Hsp92II	CATG	5 cut(s)	37, 265, 733, 812, 833
HspAI	GCGC	2 cut(s)	240, 423
KasI	GGCGCC	1 cut(s)	422
Kzo9I	GATC	7 cut(s)	24, 51, 116, 197, 442, 559, 626
LmnI	GCTCC	2 cut(s)	456, 467
Lsp1109I	GCAGC	1 cut(s)	202
LweI	GCATC	3 cut(s)	84, 322, 795
MaeI	CTAG	1 cut(s)	786
MaeIII	GTNAC	1 cut(s)	140
MalI	GATC	7 cut(s)	26, 53, 118, 199, 444, 561, 628
MbiI	CCGCTC	2 cut(s)	225, 462
MboI	GATC	7 cut(s)	24, 51, 116, 197, 442, 559, 626
MboII	GAAGA	6 cut(s)	116, 512, 524, 533, 557, 626
MflI	RGATCY	1 cut(s)	559
MhlI	GDGCHC	2 cut(s)	138, 843
MluCI	AATT	1 cut(s)	406
Mly113I	GGCGCC	1 cut(s)	423
MlyI	GAGTC	1 cut(s)	627
Mph1103I	ATGCAT	1 cut(s)	810
MseI	TTAA	2 cut(s)	591, 675
MslI	CAYNNNNRTG	2 cut(s)	20, 38
MspI	CCGG	2 cut(s)	103, 802
MspR9I	CCNGG	3 cut(s)	284, 613, 747
MvaI	CCWGG	3 cut(s)	284, 613, 747
MvnI	CGCG	1 cut(s)	836
MwoI	GCNNNNNNNGC	3 cut(s)	103, 303, 429
NarI	GGCGCC	1 cut(s)	423
NdeII	GATC	7 cut(s)	24, 51, 116, 197, 442, 559, 626
NlaIII	CATG	5 cut(s)	37, 265, 733, 812, 833
NlaIV	GGNNCC	6 cut(s)	204, 424, 458, 684, 840, 841
NmuCI	GTSAC	1 cut(s)	140
NsiI	ATGCAT	1 cut(s)	810
NspI	RCATGY	2 cut(s)	265, 812
PciI	ACATGT	1 cut(s)	261
PcsI	WCGNNNNNNNCGW	2 cut(s)	513, 531
PfeI	GAWTC	1 cut(s)	110
Pfl23II	CGTACG	1 cut(s)	622
PkrI	GCNGC	4 cut(s)	192, 207, 422, 461
Ple19I	CGATCG	1 cut(s)	629
PleI	GAGTC	1 cut(s)	626
PluTI	GGCGCC	1 cut(s)	426
PpsI	GAGTC	1 cut(s)	626
PscI	ACATGT	1 cut(s)	261
Psp6I	CCWGG	3 cut(s)	282, 611, 745
PspFI	CCCAGC	2 cut(s)	242, 357
PspGI	CCWGG	3 cut(s)	282, 611, 745
PspLI	CGTACG	1 cut(s)	622
PspN4I	GGNNCC	6 cut(s)	204, 424, 458, 684, 840, 841
PspOMI	GGGCCC	1 cut(s)	839
PspPI	GGNCC	6 cut(s)	100, 203, 280, 286, 839, 840
PsrI	GAACNNNNNNTAC	2 cut(s)	615, 647
PsuI	RGATCY	1 cut(s)	559
PvuI	CGATCG	1 cut(s)	629
RsaI	GTAC	1 cut(s)	624
RsaNI	GTAC	1 cut(s)	623
RseI	CAYNNNNRTG	2 cut(s)	20, 38
SalI	GTCGAC	1 cut(s)	437
SaqAI	TTAA	2 cut(s)	591, 675
SatI	GCNGC	4 cut(s)	191, 206, 421, 460
Sau3AI	GATC	7 cut(s)	24, 51, 116, 197, 442, 559, 626
Sau96I	GGNCC	6 cut(s)	100, 203, 280, 286, 839, 840
SchI	GAGTC	1 cut(s)	627
ScrFI	CCNGG	3 cut(s)	284, 613, 747
SduI	GDGCHC	2 cut(s)	138, 843
SetI	ASST	8 cut(s)	434, 575, 600, 768, 783, 787, 848, 855
SfaNI	GCATC	3 cut(s)	84, 322, 795
SfoI	GGCGCC	1 cut(s)	424
SgrDI	CGTCGACG	1 cut(s)	437
SinI	GGWCC	2 cut(s)	100, 286
SmiMI	CAYNNNNRTG	2 cut(s)	20, 38
SmlI	CTYRAG	1 cut(s)	722
SmoI	CTYRAG	1 cut(s)	722
Sse9I	AATT	1 cut(s)	406
SsiI	CCGC	7 cut(s)	106, 177, 206, 225, 420, 460, 836
SspDI	GGCGCC	1 cut(s)	422
SspMI	CTAG	1 cut(s)	786
StyD4I	CCNGG	3 cut(s)	282, 611, 745
TaaI	ACNGT	3 cut(s)	74, 140, 146
TaqI	TCGA	4 cut(s)	54, 169, 438, 602
TaqII	GACCGA	1 cut(s)	784
TasI	AATT	1 cut(s)	406
TauI	GCSGC	3 cut(s)	208, 423, 462
TfiI	GAWTC	1 cut(s)	110
Tru1I	TTAA	2 cut(s)	591, 675
Tru9I	TTAA	2 cut(s)	591, 675
TscAI	CASTG	1 cut(s)	143
TseFI	GTSAC	1 cut(s)	140
TseI	GCWGC	1 cut(s)	190
Tsp45I	GTSAC	1 cut(s)	140
TspDTI	ATGAA	2 cut(s)	525, 534
TspGWI	ACGGA	1 cut(s)	540
TspRI	CASTG	1 cut(s)	143
VneI	GTGCAC	1 cut(s)	134
VpaK11BI	GGWCC	2 cut(s)	100, 286
XceI	RCATGY	2 cut(s)	265, 812
XcmI	CCANNNNNNNNNTGG	1 cut(s)	658
XmiI	GTMKAC	2 cut(s)	438, 798
XspI	CTAG	1 cut(s)	786
Zsp2I	ATGCAT	1 cut(s)	810

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.