Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0024414.1

Orthogroup ID

OG0004840

Physical Location & Seq

Genomic Coordinates Reverse (-)

3492 .. 7282

Gene Structure 3791 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0024414.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

atgggagggtggcctccctacgaggtatcggccgacctccaccatagcttggtagctcgggtgtcagactacaggatgcatgtcgtaggcaggactagccatgtcgtggggcccacctatgaggtcgttgcttatgtttggcgatcagttgaagatcatcatttagcactagccacatctatgcagagagtgtctattaagccttgtcatacatatgaatacattgttgatagatcaggaggttttaagaatgtcaggtttattatgaaggacttatacaacaagttagattcaagacgccgagaaattttacttgagggtgatgcagaagctgcacttgcatatatgagaggcaaagttgccacagactcgcatttctactacaagtttagcatagatgaagataacaggttggcgaatgttttggagagactctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

145

Amino Acids

16.76

Weight (kDa)

7.1

Isoelectric Point (pI)

37.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004840)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g03870 FvH4_2g07542
rosa_chinensis	RchiOBHm_Chr5g0078211
rosa_multiflora	Rmu_sc0000777.1_g000012 Rmu_sc0002148.1_g000027 Rmu_sc0002538.1_g000027 Rmu_sc0002662.1_g000006 Rmu_sc0004277.1_g000060 Rmu_sc0004295.1_g000013 Rmu_sc0004607.1_g000001 Rmu_sc0006862.1_g000010 Rmu_sc0007315.1_g000010 Rmu_sc0007681.1_g000016 Rmu_sc0010265.1_g000010 Rmu_sc0024414.1_g000002 Rmu_sc0025517.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043280 Rroxscaffold_2G00103140 Rroxscaffold_2G00121790 Rroxscaffold_2G00123140 Rroxscaffold_3G00248480 Rroxscaffold_3G00267950 Rroxscaffold_5G00342740 Rroxscaffold_5G00374520 Rroxscaffold_6G00389230
rosa_rugosa	Rorug02G0190000 Rorug06G0080500 Rorug07G0304100
rosa_samantha	Rh4DG074400 Rh4DG074500
rosa_wichuraiana	Rw0G002790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	49, 106
AcoI	YGGCCR	1 cut(s)	30
AcsI	RAATTY	1 cut(s)	306
AcyI	GRCGYC	1 cut(s)	298
AfiI	CCNNNNNNNGG	2 cut(s)	49, 106
AgsI	TTSAA	2 cut(s)	152, 294
AluBI	AGCT	3 cut(s)	48, 56, 332
AluI	AGCT	3 cut(s)	48, 56, 332
Alw26I	GTCTC	1 cut(s)	424
AlwNI	CAGNNNCTG	1 cut(s)	332
Ama87I	CYCGRG	1 cut(s)	57
AoxI	GGCC	3 cut(s)	11, 30, 110
ApaI	GGGCCC	1 cut(s)	114
ApeKI	GCWGC	1 cut(s)	332
ApoI	RAATTY	1 cut(s)	306
AspS9I	GGNCC	2 cut(s)	110, 111
AsuHPI	GGTGA	1 cut(s)	332
AvaI	CYCGRG	1 cut(s)	57
BaeGI	GKGCMC	1 cut(s)	114
BanII	GRGCYC	1 cut(s)	114
BarI	GAAGNNNNNNTAC	2 cut(s)	260, 292
BbvI	GCAGC	1 cut(s)	319
BcoDI	GTCTC	1 cut(s)	424
BfaI	CTAG	2 cut(s)	96, 170
BfmI	CTRYAG	1 cut(s)	70
BisI	GCNGC	1 cut(s)	333
BlsI	GCNGC	1 cut(s)	334
BmeT110I	CYCGRG	1 cut(s)	57
BmgT120I	GGNCC	2 cut(s)	110, 111
BmiI	GGNNCC	2 cut(s)	111, 112
BmsI	GCATC	2 cut(s)	66, 313
BpuEI	CTTGAG	1 cut(s)	335
BsaHI	GRCGYC	1 cut(s)	298
Bsc4I	CCNNNNNNNGG	2 cut(s)	49, 106
BseGI	GGATG	1 cut(s)	81
BseLI	CCNNNNNNNGG	2 cut(s)	49, 106
BseSI	GKGCMC	1 cut(s)	114
BseX3I	CGGCCG	1 cut(s)	30
BseXI	GCAGC	1 cut(s)	319
BsgI	GTGCAG	1 cut(s)	318
Bsh1285I	CGRYCG	1 cut(s)	33
BshFI	GGCC	3 cut(s)	13, 32, 112
BsiEI	CGRYCG	1 cut(s)	33
BsiHKCI	CYCGRG	1 cut(s)	57
BslI	CCNNNNNNNGG	2 cut(s)	49, 106
BsmAI	GTCTC	1 cut(s)	424
BsnI	GGCC	3 cut(s)	13, 32, 112
BsoBI	CYCGRG	1 cut(s)	57
Bsp120I	GGGCCC	1 cut(s)	110
Bsp1286I	GDGCHC	1 cut(s)	114
Bsp143I	GATC	3 cut(s)	143, 154, 233
BspANI	GGCC	3 cut(s)	13, 32, 112
BspLI	GGNNCC	2 cut(s)	111, 112
BssMI	GATC	3 cut(s)	143, 154, 233
BssNI	GRCGYC	1 cut(s)	298
BstACI	GRCGYC	1 cut(s)	298
BstAPI	GCANNNNNTGC	1 cut(s)	332
BstF5I	GGATG	1 cut(s)	81
BstKTI	GATC	3 cut(s)	146, 157, 236
BstMAI	GTCTC	1 cut(s)	424
BstMBI	GATC	3 cut(s)	143, 154, 233
BstMCI	CGRYCG	1 cut(s)	33
BstMWI	GCNNNNNNNGC	3 cut(s)	96, 332, 338
BstNSI	RCATGY	1 cut(s)	83
BstSFI	CTRYAG	1 cut(s)	70
BstSLI	GKGCMC	1 cut(s)	114
BstV1I	GCAGC	1 cut(s)	319
BstZI	CGGCCG	1 cut(s)	30
BsuRI	GGCC	3 cut(s)	13, 32, 112
BtsCI	GGATG	1 cut(s)	81
CaiI	CAGNNNCTG	1 cut(s)	332
Cfr13I	GGNCC	2 cut(s)	110, 111
CseI	GACGC	1 cut(s)	306
CviAII	CATG	2 cut(s)	80, 101
CviJI	RGCY	9 cut(s)	13, 32, 48, 56, 99, 112, 173, 202, 332
CviKI_1	RGCY	9 cut(s)	13, 32, 48, 56, 99, 112, 173, 202, 332
DpnI	GATC	3 cut(s)	145, 156, 235
DpnII	GATC	3 cut(s)	143, 154, 233
EaeI	YGGCCR	1 cut(s)	30
EagI	CGGCCG	1 cut(s)	30
EclXI	CGGCCG	1 cut(s)	30
Eco24I	GRGCYC	1 cut(s)	114
Eco52I	CGGCCG	1 cut(s)	30
Eco88I	CYCGRG	1 cut(s)	57
EcoO109I	RGGNCCY	1 cut(s)	110
EcoT22I	ATGCAT	1 cut(s)	81
EcoT38I	GRGCYC	1 cut(s)	114
FaeI	CATG	2 cut(s)	83, 104
FalI	AAGNNNNNCTT	2 cut(s)	321, 353
FatI	CATG	2 cut(s)	79, 100
FauNDI	CATATG	1 cut(s)	214
Fnu4HI	GCNGC	1 cut(s)	333
FokI	GGATG	1 cut(s)	88
FriOI	GRGCYC	1 cut(s)	114
Fsp4HI	GCNGC	1 cut(s)	333
FspBI	CTAG	2 cut(s)	96, 170
GluI	GCNGC	1 cut(s)	333
HaeIII	GGCC	3 cut(s)	13, 32, 112
HgaI	GACGC	1 cut(s)	306
Hin1I	GRCGYC	1 cut(s)	298
Hin1II	CATG	2 cut(s)	83, 104
HinfI	GANTC	3 cut(s)	290, 368, 432
HphI	GGTGA	1 cut(s)	332
Hpy188I	TCNGA	1 cut(s)	67
Hpy188III	TCNNGA	2 cut(s)	237, 294
HpyAV	CCTTC	1 cut(s)	262
HpyCH4V	TGCA	5 cut(s)	79, 184, 326, 335, 341
HpyF10VI	GCNNNNNNNGC	3 cut(s)	96, 332, 338
Hsp92I	GRCGYC	1 cut(s)	298
Hsp92II	CATG	2 cut(s)	83, 104
Kzo9I	GATC	3 cut(s)	143, 154, 233
LpnPI	CCDG	5 cut(s)	58, 76, 222, 241, 394
Lsp1109I	GCAGC	1 cut(s)	319
LweI	GCATC	2 cut(s)	66, 313
MaeI	CTAG	2 cut(s)	96, 170
MalI	GATC	3 cut(s)	145, 156, 235
MboI	GATC	3 cut(s)	143, 154, 233
MboII	GAAGA	2 cut(s)	164, 413
MhlI	GDGCHC	1 cut(s)	114
MluCI	AATT	1 cut(s)	306
MlyI	GAGTC	2 cut(s)	362, 426
MnlI	CCTC	7 cut(s)	16, 24, 47, 115, 233, 310, 344
Mph1103I	ATGCAT	1 cut(s)	81
MseI	TTAA	2 cut(s)	198, 246
MslI	CAYNNNNRTG	2 cut(s)	179, 213
MwoI	GCNNNNNNNGC	3 cut(s)	96, 332, 338
NdeI	CATATG	1 cut(s)	214
NdeII	GATC	3 cut(s)	143, 154, 233
NlaIII	CATG	2 cut(s)	83, 104
NlaIV	GGNNCC	2 cut(s)	111, 112
NmeAIII	GCCGAG	1 cut(s)	326
NsiI	ATGCAT	1 cut(s)	81
NspI	RCATGY	1 cut(s)	83
PfeI	GAWTC	1 cut(s)	290
PflMI	CCANNNNNTGG	2 cut(s)	49, 106
PkrI	GCNGC	1 cut(s)	334
PleI	GAGTC	2 cut(s)	362, 426
PpsI	GAGTC	2 cut(s)	362, 426
PspN4I	GGNNCC	2 cut(s)	111, 112
PspOMI	GGGCCC	1 cut(s)	110
PspPI	GGNCC	2 cut(s)	110, 111
PstNI	CAGNNNCTG	1 cut(s)	332
RseI	CAYNNNNRTG	2 cut(s)	179, 213
SaqAI	TTAA	2 cut(s)	198, 246
SatI	GCNGC	1 cut(s)	333
Sau3AI	GATC	3 cut(s)	143, 154, 233
Sau96I	GGNCC	2 cut(s)	110, 111
SchI	GAGTC	2 cut(s)	362, 426
SduI	GDGCHC	1 cut(s)	114
SfaNI	GCATC	2 cut(s)	66, 313
SfcI	CTRYAG	1 cut(s)	70
SmiMI	CAYNNNNRTG	2 cut(s)	179, 213
SmlI	CTYRAG	1 cut(s)	314
SmoI	CTYRAG	1 cut(s)	314
Sse9I	AATT	1 cut(s)	306
SspMI	CTAG	2 cut(s)	96, 170
TasI	AATT	1 cut(s)	306
TfiI	GAWTC	1 cut(s)	290
Tru1I	TTAA	2 cut(s)	198, 246
Tru9I	TTAA	2 cut(s)	198, 246
TseI	GCWGC	1 cut(s)	332
TspDTI	ATGAA	3 cut(s)	231, 281, 414
Van91I	CCANNNNNTGG	2 cut(s)	49, 106
XapI	RAATTY	1 cut(s)	306
XceI	RCATGY	1 cut(s)	83
XspI	CTAG	2 cut(s)	96, 170
Zsp2I	ATGCAT	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.