Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0004840

Physical Location & Seq

Genomic Coordinates Reverse (-)

61116405 .. 61127180

Gene Structure 10776 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00267950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGTACCCGGACGGCTCATGGTACCCGGATGGCTCCTCGGAGGCTTGGGTGAGGAAGGTGAGGGGGTGTCCTGCGTGTACCCATGTACCCGAAGCTTATGTACCCGTACATGACCCTTACTCAAGGTCGGAGGCTCGTACCCTAACTCCTAGGGACCCTCCTTCTATGAAGCATGATAGATATCATGGGCGAGATGAATATGAGCGGGAAGAGCAACATGACTTTTTGTATCGGTTCCCACGGACGGCGCCAATGTTTCGTATACCGGCCGACCTCCACCATGGCAATGTAGCTCGGGTGTCGGCCTACCGGATGCATGCCATAGGAGGGGCTAGCCATGTTGTGGGGCCCACCTATGAGGTGAACCTTGGAGCAACCCTGAAAGATGAGAATCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

132

Amino Acids

15.11

Weight (kDa)

6.49

Isoelectric Point (pI)

38.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004840)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g03870 FvH4_2g07542
rosa_chinensis	RchiOBHm_Chr5g0078211
rosa_multiflora	Rmu_sc0000777.1_g000012 Rmu_sc0002148.1_g000027 Rmu_sc0002538.1_g000027 Rmu_sc0002662.1_g000006 Rmu_sc0004277.1_g000060 Rmu_sc0004295.1_g000013 Rmu_sc0004607.1_g000001 Rmu_sc0006862.1_g000010 Rmu_sc0007315.1_g000010 Rmu_sc0007681.1_g000016 Rmu_sc0010265.1_g000010 Rmu_sc0024414.1_g000002 Rmu_sc0025517.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043280 Rroxscaffold_2G00103140 Rroxscaffold_2G00121790 Rroxscaffold_2G00123140 Rroxscaffold_3G00248480 Rroxscaffold_3G00267950 Rroxscaffold_5G00342740 Rroxscaffold_5G00374520 Rroxscaffold_6G00389230
rosa_rugosa	Rorug02G0190000 Rorug06G0080500 Rorug07G0304100
rosa_samantha	Rh4DG074400 Rh4DG074500
rosa_wichuraiana	Rw0G002790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	21
AccB1I	GGYRCC	2 cut(s)	21, 247
AccB7I	CCANNNNNTGG	1 cut(s)	343
AccBSI	CCGCTC	1 cut(s)	205
AccI	GTMKAC	1 cut(s)	262
AciI	CCGC	1 cut(s)	205
AcoI	YGGCCR	1 cut(s)	267
AcyI	GRCGYC	1 cut(s)	248
AfaI	GTAC	7 cut(s)	5, 23, 79, 87, 102, 108, 139
AfiI	CCNNNNNNNGG	3 cut(s)	244, 327, 343
AluBI	AGCT	2 cut(s)	95, 293
AluI	AGCT	2 cut(s)	95, 293
Ama87I	CYCGRG	1 cut(s)	294
AoxI	GGCC	3 cut(s)	267, 303, 347
ApaI	GGGCCC	1 cut(s)	351
Asp718I	GGTACC	1 cut(s)	21
AspA2I	CCTAGG	1 cut(s)	149
AspLEI	GCGC	1 cut(s)	250
AspS9I	GGNCC	3 cut(s)	154, 347, 348
AsuC2I	CCSGG	2 cut(s)	8, 26
AsuHPI	GGTGA	3 cut(s)	61, 70, 373
AsuNHI	GCTAGC	1 cut(s)	332
AvaI	CYCGRG	1 cut(s)	294
AvaII	GGWCC	1 cut(s)	154
AvrII	CCTAGG	1 cut(s)	149
BaeGI	GKGCMC	1 cut(s)	351
BaeI	ACNNNNGTAYC	2 cut(s)	69, 102
BanI	GGYRCC	2 cut(s)	21, 247
BanII	GRGCYC	1 cut(s)	351
BarI	GAAGNNNNNNTAC	2 cut(s)	84, 116
BccI	CCATC	1 cut(s)	23
BceAI	ACGGC	2 cut(s)	28, 261
BcnI	CCSGG	2 cut(s)	8, 26
BfaI	CTAG	2 cut(s)	150, 333
BfoI	RGCGCY	1 cut(s)	251
BlnI	CCTAGG	1 cut(s)	149
Bme1390I	CCNGG	2 cut(s)	8, 26
Bme18I	GGWCC	1 cut(s)	154
BmeT110I	CYCGRG	1 cut(s)	294
BmgT120I	GGNCC	3 cut(s)	154, 347, 348
BmiI	GGNNCC	8 cut(s)	23, 34, 155, 156, 236, 249, 348, 349
BmrFI	CCNGG	2 cut(s)	8, 26
BmsI	GCATC	1 cut(s)	303
BmtI	GCTAGC	1 cut(s)	336
BpuEI	CTTGAG	1 cut(s)	106
BpuMI	CCSGG	2 cut(s)	8, 26
BsaBI	GATNNNNATC	2 cut(s)	180, 390
BsaHI	GRCGYC	1 cut(s)	248
BsaJI	CCNNGG	5 cut(s)	36, 149, 239, 280, 367
BsaWI	WCCGGW	1 cut(s)	309
BsaXI	ACNNNNNCTCC	2 cut(s)	130, 160
Bsc4I	CCNNNNNNNGG	3 cut(s)	244, 327, 343
Bse118I	RCCGGY	1 cut(s)	265
Bse3DI	GCAATG	1 cut(s)	292
Bse8I	GATNNNNATC	2 cut(s)	180, 390
BseDI	CCNNGG	5 cut(s)	36, 149, 239, 280, 367
BseGI	GGATG	2 cut(s)	34, 318
BseJI	GATNNNNATC	2 cut(s)	180, 390
BseLI	CCNNNNNNNGG	3 cut(s)	244, 327, 343
BseMI	GCAATG	1 cut(s)	292
BseRI	GAGGAG	1 cut(s)	25
BseSI	GKGCMC	1 cut(s)	351
BseX3I	CGGCCG	1 cut(s)	267
Bsh1285I	CGRYCG	1 cut(s)	270
BshFI	GGCC	3 cut(s)	269, 305, 349
BshNI	GGYRCC	2 cut(s)	21, 247
BsiEI	CGRYCG	1 cut(s)	270
BsiHKCI	CYCGRG	1 cut(s)	294
BsiSI	CCGG	4 cut(s)	8, 26, 266, 310
BslFI	GGGAC	1 cut(s)	167
BslI	CCNNNNNNNGG	3 cut(s)	244, 327, 343
BsmFI	GGGAC	1 cut(s)	167
BsnI	GGCC	3 cut(s)	269, 305, 349
BsoBI	CYCGRG	1 cut(s)	294
Bsp120I	GGGCCC	1 cut(s)	347
Bsp1286I	GDGCHC	1 cut(s)	351
Bsp19I	CCATGG	1 cut(s)	280
BspACI	CCGC	1 cut(s)	205
BspANI	GGCC	3 cut(s)	269, 305, 349
BspLI	GGNNCC	8 cut(s)	23, 34, 155, 156, 236, 249, 348, 349
BspOI	GCTAGC	1 cut(s)	336
BspQI	GCTCTTC	1 cut(s)	204
BspT107I	GGYRCC	2 cut(s)	21, 247
BsrBI	CCGCTC	1 cut(s)	205
BsrDI	GCAATG	1 cut(s)	292
BsrFI	RCCGGY	1 cut(s)	265
BssAI	RCCGGY	1 cut(s)	265
BssECI	CCNNGG	5 cut(s)	36, 149, 239, 280, 367
BssNAI	GTATAC	1 cut(s)	263
BssNI	GRCGYC	1 cut(s)	248
BssT1I	CCWWGG	3 cut(s)	149, 280, 367
Bst1107I	GTATAC	1 cut(s)	263
Bst6I	CTCTTC	1 cut(s)	204
BstACI	GRCGYC	1 cut(s)	248
BstC8I	GCNNGC	2 cut(s)	318, 334
BstDSI	CCRYGG	2 cut(s)	239, 280
BstF5I	GGATG	2 cut(s)	34, 318
BstH2I	RGCGCY	1 cut(s)	251
BstHHI	GCGC	1 cut(s)	250
BstMCI	CGRYCG	1 cut(s)	270
BstMWI	GCNNNNNNNGC	1 cut(s)	211
BstNSI	RCATGY	1 cut(s)	320
BstSCI	CCNGG	2 cut(s)	6, 24
BstSLI	GKGCMC	1 cut(s)	351
BstZ17I	GTATAC	1 cut(s)	263
BstZI	CGGCCG	1 cut(s)	267
BsuRI	GGCC	3 cut(s)	269, 305, 349
BtgI	CCRYGG	2 cut(s)	239, 280
BtsCI	GGATG	2 cut(s)	34, 318
Cac8I	GCNNGC	2 cut(s)	318, 334
CfoI	GCGC	1 cut(s)	250
Cfr10I	RCCGGY	1 cut(s)	265
Cfr13I	GGNCC	3 cut(s)	154, 347, 348
Csp6I	GTAC	7 cut(s)	4, 22, 78, 86, 101, 107, 138
CviAII	CATG	9 cut(s)	18, 83, 110, 173, 185, 218, 281, 317, 338
CviQI	GTAC	7 cut(s)	4, 22, 78, 86, 101, 107, 138
DinI	GGCGCC	1 cut(s)	249
EaeI	YGGCCR	1 cut(s)	267
EagI	CGGCCG	1 cut(s)	267
Eam1104I	CTCTTC	1 cut(s)	204
EarI	CTCTTC	1 cut(s)	204
EclXI	CGGCCG	1 cut(s)	267
Eco130I	CCWWGG	3 cut(s)	149, 280, 367
Eco24I	GRGCYC	1 cut(s)	351
Eco32I	GATATC	1 cut(s)	182
Eco47I	GGWCC	1 cut(s)	154
Eco52I	CGGCCG	1 cut(s)	267
Eco88I	CYCGRG	1 cut(s)	294
EcoO109I	RGGNCCY	2 cut(s)	154, 347
EcoRV	GATATC	1 cut(s)	182
EcoT14I	CCWWGG	3 cut(s)	149, 280, 367
EcoT22I	ATGCAT	1 cut(s)	318
EcoT38I	GRGCYC	1 cut(s)	351
EgeI	GGCGCC	1 cut(s)	249
EheI	GGCGCC	1 cut(s)	249
ErhI	CCWWGG	3 cut(s)	149, 280, 367
FaeI	CATG	9 cut(s)	21, 86, 113, 176, 188, 221, 284, 320, 341
FaqI	GGGAC	1 cut(s)	167
FatI	CATG	9 cut(s)	17, 82, 109, 172, 184, 217, 280, 316, 337
FauI	CCCGC	1 cut(s)	198
FblI	GTMKAC	1 cut(s)	262
FokI	GGATG	2 cut(s)	41, 325
FriOI	GRGCYC	1 cut(s)	351
FspBI	CTAG	2 cut(s)	150, 333
GlaI	GCGC	1 cut(s)	249
HaeII	RGCGCY	1 cut(s)	251
HaeIII	GGCC	3 cut(s)	269, 305, 349
HapII	CCGG	4 cut(s)	8, 26, 266, 310
HhaI	GCGC	1 cut(s)	250
Hin1I	GRCGYC	1 cut(s)	248
Hin1II	CATG	9 cut(s)	21, 86, 113, 176, 188, 221, 284, 320, 341
Hin6I	GCGC	1 cut(s)	248
HinP1I	GCGC	1 cut(s)	248
HindIII	AAGCTT	1 cut(s)	93
HinfI	GANTC	1 cut(s)	391
HpaII	CCGG	4 cut(s)	8, 26, 266, 310
HphI	GGTGA	3 cut(s)	61, 70, 373
Hpy166II	GTNNAC	3 cut(s)	78, 263, 364
Hpy188I	TCNGA	2 cut(s)	40, 130
Hpy8I	GTNNAC	3 cut(s)	78, 263, 364
HpyAV	CCTTC	2 cut(s)	49, 171
HpyCH4V	TGCA	1 cut(s)	316
HpyF10VI	GCNNNNNNNGC	1 cut(s)	211
Hsp92I	GRCGYC	1 cut(s)	248
Hsp92II	CATG	9 cut(s)	21, 86, 113, 176, 188, 221, 284, 320, 341
HspAI	GCGC	1 cut(s)	248
KasI	GGCGCC	1 cut(s)	247
KflI	GGGWCCC	1 cut(s)	154
KpnI	GGTACC	1 cut(s)	25
LguI	GCTCTTC	1 cut(s)	204
LmnI	GCTCC	2 cut(s)	38, 371
LpnPI	CCDG	6 cut(s)	21, 39, 84, 279, 323, 392
LweI	GCATC	1 cut(s)	303
MaeI	CTAG	2 cut(s)	150, 333
MbiI	CCGCTC	1 cut(s)	205
MboII	GAAGA	1 cut(s)	221
MhlI	GDGCHC	1 cut(s)	351
Mly113I	GGCGCC	1 cut(s)	248
MmeI	TCCRAC	1 cut(s)	108
MnlI	CCTC	9 cut(s)	34, 45, 46, 54, 124, 168, 284, 320, 352
Mph1103I	ATGCAT	1 cut(s)	318
MseI	TTAA	1 cut(s)	397
MslI	CAYNNNNRTG	1 cut(s)	285
MspI	CCGG	4 cut(s)	8, 26, 266, 310
MspR9I	CCNGG	2 cut(s)	8, 26
MwoI	GCNNNNNNNGC	1 cut(s)	211
NarI	GGCGCC	1 cut(s)	248
NciI	CCSGG	2 cut(s)	8, 26
NcoI	CCATGG	1 cut(s)	280
NheI	GCTAGC	1 cut(s)	332
NlaIII	CATG	9 cut(s)	21, 86, 113, 176, 188, 221, 284, 320, 341
NlaIV	GGNNCC	8 cut(s)	23, 34, 155, 156, 236, 249, 348, 349
NsiI	ATGCAT	1 cut(s)	318
NspI	RCATGY	1 cut(s)	320
PaeI	GCATGC	1 cut(s)	320
PciSI	GCTCTTC	1 cut(s)	204
PfeI	GAWTC	1 cut(s)	391
PflMI	CCANNNNNTGG	1 cut(s)	343
PluTI	GGCGCC	1 cut(s)	251
PpuMI	RGGWCCY	1 cut(s)	154
Psp5II	RGGWCCY	1 cut(s)	154
PspN4I	GGNNCC	8 cut(s)	23, 34, 155, 156, 236, 249, 348, 349
PspOMI	GGGCCC	1 cut(s)	347
PspPI	GGNCC	3 cut(s)	154, 347, 348
PspPPI	RGGWCCY	1 cut(s)	154
RsaI	GTAC	7 cut(s)	5, 23, 79, 87, 102, 108, 139
RsaNI	GTAC	7 cut(s)	4, 22, 78, 86, 101, 107, 138
RseI	CAYNNNNRTG	1 cut(s)	285
SapI	GCTCTTC	1 cut(s)	204
SaqAI	TTAA	1 cut(s)	397
Sau96I	GGNCC	3 cut(s)	154, 347, 348
ScrFI	CCNGG	2 cut(s)	8, 26
SduI	GDGCHC	1 cut(s)	351
SetI	ASST	8 cut(s)	60, 97, 128, 276, 295, 356, 363, 369
SfaNI	GCATC	1 cut(s)	303
SfoI	GGCGCC	1 cut(s)	249
SinI	GGWCC	1 cut(s)	154
SmiMI	CAYNNNNRTG	1 cut(s)	285
SmlI	CTYRAG	1 cut(s)	121
SmoI	CTYRAG	1 cut(s)	121
SphI	GCATGC	1 cut(s)	320
SsiI	CCGC	1 cut(s)	205
SspDI	GGCGCC	1 cut(s)	247
SspMI	CTAG	2 cut(s)	150, 333
StyD4I	CCNGG	2 cut(s)	6, 24
StyI	CCWWGG	3 cut(s)	149, 280, 367
TfiI	GAWTC	1 cut(s)	391
Tru1I	TTAA	1 cut(s)	397
Tru9I	TTAA	1 cut(s)	397
TspDTI	ATGAA	2 cut(s)	182, 210
TspGWI	ACGGA	1 cut(s)	256
Van91I	CCANNNNNTGG	1 cut(s)	343
VpaK11BI	GGWCC	1 cut(s)	154
XceI	RCATGY	1 cut(s)	320
XmaJI	CCTAGG	1 cut(s)	149
XmiI	GTMKAC	1 cut(s)	262
XspI	CTAG	2 cut(s)	150, 333
Zsp2I	ATGCAT	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.