Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004840

Physical Location & Seq

Genomic Coordinates Forward (+)

54486031 .. 54501814

Gene Structure 15784 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00121790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGTGCGGGGTACCCTGCGCGTGCCTGCTAACTTCAGTACCCGCTGGTTCATGACAGTCCCGGATGAGTGCGAGGCTTGGGAGTGGAGGGGAGTCCTTCATCCTCTTGTAGAGCATGGGAGGGTAGCCTCCCGACTAGATACCGGCCGACCTCCACCATGGCAATGTAGCTCGGATGTCGGCCTACGGATGCATGCCATAGGCGGGGCTAGCCATGTTGTGGGGCCCACCTATGAGGTCGTTGATTATGCTTGGCGGAGATATGAGATAAGGCCGATAACCATCTCCTTCCAACACAATCCGATATTCAATCATGGCACGAGAAAAGATCATTTGGTAATTTCTATAACAGATTCGAATCGACCGAGTGACAGCCCTAGGTGTACATCAAGCATCAAGCAATCCTTCCTCCTTGGAAGGGCTCTAACTCACAAAAAAATGGATCCAACCCATTATCCCTCAACTTCTCCGACCTTTTCTTTGACTCATGGTTCTATCAAAACGACTACCCCGAAATCCTCGAGCACCGACCCACCTCCACCACACCCGCCACCACCTCTACCGCCATTTCAACCTCCACCTTCACCGCAAATGGGTTCTTCAGCTCACTCTACTCCACCATCTGCATCTTCCTCTCTCTCTCTCTCTTCGCCACCAACCACTTCACCAAGCTCACCAACGAAGACCTCGTCGCCCATACGCCGGCGAGAGGGCCGAGGTCCTTGTCGATCCTCGTCCTCGGGTAGAGCAGTGGAGATCGGTCTCATCAAAGCCGTTGATGATCTCCTTAACGAAGTAGCGAGTCGGCTGAACCGACCTCTCTCCCGAAGCAGCAACGACGACTTAGAGTCGTCGACGAGGCCAAACCGACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

291

Amino Acids

31.85

Weight (kDa)

10.01

Isoelectric Point (pI)

71.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004840)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g03870 FvH4_2g07542
rosa_chinensis	RchiOBHm_Chr5g0078211
rosa_multiflora	Rmu_sc0000777.1_g000012 Rmu_sc0002148.1_g000027 Rmu_sc0002538.1_g000027 Rmu_sc0002662.1_g000006 Rmu_sc0004277.1_g000060 Rmu_sc0004295.1_g000013 Rmu_sc0004607.1_g000001 Rmu_sc0006862.1_g000010 Rmu_sc0007315.1_g000010 Rmu_sc0007681.1_g000016 Rmu_sc0010265.1_g000010 Rmu_sc0024414.1_g000002 Rmu_sc0025517.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043280 Rroxscaffold_2G00103140 Rroxscaffold_2G00121790 Rroxscaffold_2G00123140 Rroxscaffold_3G00248480 Rroxscaffold_3G00267950 Rroxscaffold_5G00342740 Rroxscaffold_5G00374520 Rroxscaffold_6G00389230
rosa_rugosa	Rorug02G0190000 Rorug06G0080500 Rorug07G0304100
rosa_samantha	Rh4DG074400 Rh4DG074500
rosa_wichuraiana	Rw0G002790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	11
AccB1I	GGYRCC	1 cut(s)	11
AccB7I	CCANNNNNTGG	1 cut(s)	220
AccI	GTMKAC	1 cut(s)	854
AccII	CGCG	1 cut(s)	21
AciI	CCGC	7 cut(s)	7, 43, 204, 256, 548, 563, 587
AclWI	GGATC	3 cut(s)	437, 450, 723
AcoI	YGGCCR	1 cut(s)	145
AcuI	CTGAAG	2 cut(s)	19, 585
AfaI	GTAC	3 cut(s)	13, 40, 385
AfiI	CCNNNNNNNGG	6 cut(s)	204, 220, 418, 593, 702, 709
AgsI	TTSAA	2 cut(s)	310, 572
AhdI	GACNNNNNGTC	1 cut(s)	847
AluBI	AGCT	3 cut(s)	171, 605, 672
AluI	AGCT	3 cut(s)	171, 605, 672
Alw21I	GWGCWC	1 cut(s)	527
Alw26I	GTCTC	1 cut(s)	767
AlwI	GGATC	3 cut(s)	437, 450, 723
Ama87I	CYCGRG	2 cut(s)	520, 739
AoxI	GGCC	6 cut(s)	145, 181, 224, 272, 712, 860
ApaI	GGGCCC	1 cut(s)	228
ApeKI	GCWGC	1 cut(s)	831
ArsI	GACNNNNNNTTYG	4 cut(s)	463, 495, 674, 706
Asp718I	GGTACC	1 cut(s)	11
AspA2I	CCTAGG	1 cut(s)	377
AspLEI	GCGC	1 cut(s)	21
AspS9I	GGNCC	4 cut(s)	224, 225, 712, 719
AsuC2I	CCSGG	1 cut(s)	62
AsuHPI	GGTGA	3 cut(s)	576, 657, 666
AsuII	TTCGAA	1 cut(s)	356
AsuNHI	GCTAGC	1 cut(s)	209
AvaI	CYCGRG	2 cut(s)	520, 739
AvaII	GGWCC	1 cut(s)	719
AvrII	CCTAGG	1 cut(s)	377
BaeGI	GKGCMC	1 cut(s)	228
BaeI	ACNNNNGTAYC	2 cut(s)	22, 55
BamHI	GGATCC	1 cut(s)	442
BanI	GGYRCC	1 cut(s)	11
BanII	GRGCYC	2 cut(s)	228, 424
BauI	CACGAG	1 cut(s)	319
BbsI	GAAGAC	1 cut(s)	689
Bbv12I	GWGCWC	1 cut(s)	527
BbvI	GCAGC	1 cut(s)	843
BccI	CCATC	2 cut(s)	290, 628
BceAI	ACGGC	1 cut(s)	758
BcnI	CCSGG	1 cut(s)	62
BcoDI	GTCTC	1 cut(s)	767
BfaI	CTAG	3 cut(s)	137, 210, 378
BisI	GCNGC	1 cut(s)	832
BlnI	CCTAGG	1 cut(s)	377
BlsI	GCNGC	1 cut(s)	833
Bme1390I	CCNGG	1 cut(s)	62
Bme18I	GGWCC	1 cut(s)	719
BmeRI	GACNNNNNGTC	1 cut(s)	847
BmeT110I	CYCGRG	2 cut(s)	520, 739
BmgT120I	GGNCC	4 cut(s)	224, 225, 712, 719
BmiI	GGNNCC	4 cut(s)	13, 225, 226, 444
BmrFI	CCNGG	1 cut(s)	62
BmsI	GCATC	3 cut(s)	180, 402, 635
BmtI	GCTAGC	1 cut(s)	213
BpiI	GAAGAC	1 cut(s)	689
Bpu14I	TTCGAA	1 cut(s)	356
BpuMI	CCSGG	1 cut(s)	62
BsaBI	GATNNNNATC	2 cut(s)	281, 357
BsaI	GGTCTC	1 cut(s)	767
BsaJI	CCNNGG	5 cut(s)	158, 377, 412, 715, 738
Bsc4I	CCNNNNNNNGG	6 cut(s)	204, 220, 418, 593, 702, 709
Bse118I	RCCGGY	2 cut(s)	143, 702
Bse3DI	GCAATG	1 cut(s)	170
Bse8I	GATNNNNATC	2 cut(s)	281, 357
BseDI	CCNNGG	5 cut(s)	158, 377, 412, 715, 738
BseGI	GGATG	4 cut(s)	70, 100, 181, 195
BseJI	GATNNNNATC	2 cut(s)	281, 357
BseLI	CCNNNNNNNGG	6 cut(s)	204, 220, 418, 593, 702, 709
BseMI	GCAATG	1 cut(s)	170
BseSI	GKGCMC	1 cut(s)	228
BseX3I	CGGCCG	1 cut(s)	145
BseXI	GCAGC	1 cut(s)	843
Bsh1236I	CGCG	1 cut(s)	21
Bsh1285I	CGRYCG	2 cut(s)	148, 365
BshFI	GGCC	6 cut(s)	147, 183, 226, 274, 714, 862
BshNI	GGYRCC	1 cut(s)	11
BsiEI	CGRYCG	2 cut(s)	148, 365
BsiHKAI	GWGCWC	1 cut(s)	527
BsiHKCI	CYCGRG	2 cut(s)	520, 739
BsiSI	CCGG	3 cut(s)	62, 144, 703
BslFI	GGGAC	1 cut(s)	44
BslI	CCNNNNNNNGG	6 cut(s)	204, 220, 418, 593, 702, 709
BsmAI	GTCTC	1 cut(s)	767
BsmFI	GGGAC	1 cut(s)	44
BsnI	GGCC	6 cut(s)	147, 183, 226, 274, 714, 862
Bso31I	GGTCTC	1 cut(s)	767
BsoBI	CYCGRG	2 cut(s)	520, 739
Bsp119I	TTCGAA	1 cut(s)	356
Bsp120I	GGGCCC	1 cut(s)	224
Bsp1286I	GDGCHC	3 cut(s)	228, 424, 527
Bsp1407I	TGTACA	1 cut(s)	383
Bsp143I	GATC	5 cut(s)	328, 442, 728, 756, 781
Bsp19I	CCATGG	1 cut(s)	158
BspACI	CCGC	7 cut(s)	7, 43, 204, 256, 548, 563, 587
BspANI	GGCC	6 cut(s)	147, 183, 226, 274, 714, 862
BspFNI	CGCG	1 cut(s)	21
BspHI	TCATGA	1 cut(s)	51
BspLI	GGNNCC	4 cut(s)	13, 225, 226, 444
BspOI	GCTAGC	1 cut(s)	213
BspPI	GGATC	3 cut(s)	437, 450, 723
BspT104I	TTCGAA	1 cut(s)	356
BspT107I	GGYRCC	1 cut(s)	11
BspTNI	GGTCTC	1 cut(s)	767
BsrDI	GCAATG	1 cut(s)	170
BsrFI	RCCGGY	2 cut(s)	143, 702
BsrGI	TGTACA	1 cut(s)	383
BssAI	RCCGGY	2 cut(s)	143, 702
BssECI	CCNNGG	5 cut(s)	158, 377, 412, 715, 738
BssMI	GATC	5 cut(s)	328, 442, 728, 756, 781
BssSI	CACGAG	1 cut(s)	319
BssT1I	CCWWGG	3 cut(s)	158, 377, 412
Bst2BI	CACGAG	1 cut(s)	319
Bst4CI	ACNGT	1 cut(s)	58
Bst6I	CTCTTC	1 cut(s)	652
BstAUI	TGTACA	1 cut(s)	383
BstBI	TTCGAA	1 cut(s)	356
BstC8I	GCNNGC	5 cut(s)	23, 27, 195, 211, 704
BstDEI	CTNAG	1 cut(s)	844
BstDSI	CCRYGG	1 cut(s)	158
BstF5I	GGATG	4 cut(s)	70, 100, 181, 195
BstFNI	CGCG	1 cut(s)	21
BstHHI	GCGC	1 cut(s)	21
BstKTI	GATC	5 cut(s)	331, 445, 731, 759, 784
BstMAI	GTCTC	1 cut(s)	767
BstMBI	GATC	5 cut(s)	328, 442, 728, 756, 781
BstMCI	CGRYCG	2 cut(s)	148, 365
BstMWI	GCNNNNNNNGC	1 cut(s)	210
BstNSI	RCATGY	1 cut(s)	197
BstSCI	CCNGG	1 cut(s)	60
BstSLI	GKGCMC	1 cut(s)	228
BstUI	CGCG	1 cut(s)	21
BstV1I	GCAGC	1 cut(s)	843
BstV2I	GAAGAC	1 cut(s)	689
BstX2I	RGATCY	1 cut(s)	442
BstYI	RGATCY	1 cut(s)	442
BstZI	CGGCCG	1 cut(s)	145
BsuRI	GGCC	6 cut(s)	147, 183, 226, 274, 714, 862
BtgI	CCRYGG	1 cut(s)	158
BtsCI	GGATG	4 cut(s)	70, 100, 181, 195
BtsI	GCAGTG	1 cut(s)	756
BtsIMutI	CAGTG	1 cut(s)	756
Cac8I	GCNNGC	5 cut(s)	23, 27, 195, 211, 704
CciI	TCATGA	1 cut(s)	51
CfoI	GCGC	1 cut(s)	21
Cfr10I	RCCGGY	2 cut(s)	143, 702
Cfr13I	GGNCC	4 cut(s)	224, 225, 712, 719
Csp6I	GTAC	3 cut(s)	12, 39, 384
CviAII	CATG	7 cut(s)	52, 116, 159, 194, 215, 314, 488
CviQI	GTAC	3 cut(s)	12, 39, 384
DdeI	CTNAG	1 cut(s)	844
DpnI	GATC	5 cut(s)	330, 444, 730, 758, 783
DpnII	GATC	5 cut(s)	328, 442, 728, 756, 781
DriI	GACNNNNNGTC	1 cut(s)	847
EaeI	YGGCCR	1 cut(s)	145
EagI	CGGCCG	1 cut(s)	145
Eam1104I	CTCTTC	1 cut(s)	652
Eam1105I	GACNNNNNGTC	1 cut(s)	847
EarI	CTCTTC	1 cut(s)	652
EciI	GGCGGA	1 cut(s)	271
EclXI	CGGCCG	1 cut(s)	145
Eco130I	CCWWGG	3 cut(s)	158, 377, 412
Eco24I	GRGCYC	2 cut(s)	228, 424
Eco31I	GGTCTC	1 cut(s)	767
Eco47I	GGWCC	1 cut(s)	719
Eco52I	CGGCCG	1 cut(s)	145
Eco57I	CTGAAG	2 cut(s)	19, 585
Eco88I	CYCGRG	2 cut(s)	520, 739
EcoO109I	RGGNCCY	2 cut(s)	224, 719
EcoT14I	CCWWGG	3 cut(s)	158, 377, 412
EcoT22I	ATGCAT	1 cut(s)	195
EcoT38I	GRGCYC	2 cut(s)	228, 424
ErhI	CCWWGG	3 cut(s)	158, 377, 412
FaeI	CATG	7 cut(s)	55, 119, 162, 197, 218, 317, 491
FalI	AAGNNNNNCTT	2 cut(s)	389, 421
FaqI	GGGAC	1 cut(s)	44
FatI	CATG	7 cut(s)	51, 115, 158, 193, 214, 313, 487
FauI	CCCGC	3 cut(s)	50, 197, 555
FblI	GTMKAC	1 cut(s)	854
Fnu4HI	GCNGC	1 cut(s)	832
FokI	GGATG	4 cut(s)	77, 87, 188, 202
FriOI	GRGCYC	2 cut(s)	228, 424
Fsp4HI	GCNGC	1 cut(s)	832
FspBI	CTAG	3 cut(s)	137, 210, 378
GlaI	GCGC	1 cut(s)	20
GluI	GCNGC	1 cut(s)	832
HaeIII	GGCC	6 cut(s)	147, 183, 226, 274, 714, 862
HapII	CCGG	3 cut(s)	62, 144, 703
HhaI	GCGC	1 cut(s)	21
Hin1II	CATG	7 cut(s)	55, 119, 162, 197, 218, 317, 491
Hin6I	GCGC	1 cut(s)	19
HinP1I	GCGC	1 cut(s)	19
HincII	GTYRAC	1 cut(s)	855
HindII	GTYRAC	1 cut(s)	855
HinfI	GANTC	6 cut(s)	93, 353, 358, 484, 802, 848
HpaII	CCGG	3 cut(s)	62, 144, 703
HphI	GGTGA	3 cut(s)	576, 657, 666
Hpy166II	GTNNAC	2 cut(s)	384, 855
Hpy188I	TCNGA	3 cut(s)	175, 303, 471
Hpy188III	TCNNGA	3 cut(s)	52, 132, 825
Hpy8I	GTNNAC	2 cut(s)	384, 855
Hpy99I	CGWCG	4 cut(s)	694, 842, 856, 859
HpyAV	CCTTC	5 cut(s)	107, 298, 411, 415, 591
HpyCH4III	ACNGT	1 cut(s)	58
HpyCH4V	TGCA	2 cut(s)	193, 626
HpyF10VI	GCNNNNNNNGC	1 cut(s)	210
HpyF3I	CTNAG	1 cut(s)	844
Hsp92II	CATG	7 cut(s)	55, 119, 162, 197, 218, 317, 491
HspAI	GCGC	1 cut(s)	19
KpnI	GGTACC	1 cut(s)	15
KroI	GCCGGC	1 cut(s)	702
KroNI	GCCGGC	1 cut(s)	704
Kzo9I	GATC	5 cut(s)	328, 442, 728, 756, 781
LpnPI	CCDG	6 cut(s)	29, 31, 39, 75, 157, 716
Lsp1109I	GCAGC	1 cut(s)	843
LweI	GCATC	3 cut(s)	180, 402, 635
MaeI	CTAG	3 cut(s)	137, 210, 378
MaeIII	GTNAC	1 cut(s)	368
MalI	GATC	5 cut(s)	330, 444, 730, 758, 783
MboI	GATC	5 cut(s)	328, 442, 728, 756, 781
MboII	GAAGA	4 cut(s)	591, 621, 639, 694
MflI	RGATCY	1 cut(s)	442
MhlI	GDGCHC	3 cut(s)	228, 424, 527
MluCI	AATT	1 cut(s)	339
MlyI	GAGTC	4 cut(s)	102, 478, 811, 857
MmeI	TCCRAC	3 cut(s)	316, 470, 494
Mph1103I	ATGCAT	1 cut(s)	195
MreI	CGCCGGCG	1 cut(s)	702
MroNI	GCCGGC	1 cut(s)	702
MseI	TTAA	1 cut(s)	789
MslI	CAYNNNNRTG	1 cut(s)	163
MspA1I	CMGCKG	1 cut(s)	45
MspI	CCGG	3 cut(s)	62, 144, 703
MspR9I	CCNGG	1 cut(s)	62
MvnI	CGCG	1 cut(s)	21
MwoI	GCNNNNNNNGC	1 cut(s)	210
NaeI	GCCGGC	1 cut(s)	704
NciI	CCSGG	1 cut(s)	62
NcoI	CCATGG	1 cut(s)	158
NdeII	GATC	5 cut(s)	328, 442, 728, 756, 781
NgoMIV	GCCGGC	1 cut(s)	702
NheI	GCTAGC	1 cut(s)	209
NlaIII	CATG	7 cut(s)	55, 119, 162, 197, 218, 317, 491
NlaIV	GGNNCC	4 cut(s)	13, 225, 226, 444
NmeAIII	GCCGAG	1 cut(s)	740
NmuCI	GTSAC	1 cut(s)	368
NsiI	ATGCAT	1 cut(s)	195
NspI	RCATGY	1 cut(s)	197
NspV	TTCGAA	1 cut(s)	356
PaeI	GCATGC	1 cut(s)	197
PaeR7I	CTCGAG	1 cut(s)	520
PagI	TCATGA	1 cut(s)	51
PcsI	WCGNNNNNNNCGW	4 cut(s)	362, 509, 686, 811
PdiI	GCCGGC	1 cut(s)	704
PfeI	GAWTC	2 cut(s)	353, 358
PflFI	GACNNNGTC	1 cut(s)	688
PflMI	CCANNNNNTGG	1 cut(s)	220
PfoI	TCCNGGA	1 cut(s)	60
PkrI	GCNGC	1 cut(s)	833
PleI	GAGTC	4 cut(s)	101, 478, 810, 856
PpsI	GAGTC	4 cut(s)	101, 478, 810, 856
PpuMI	RGGWCCY	1 cut(s)	719
Psp5II	RGGWCCY	1 cut(s)	719
PspN4I	GGNNCC	4 cut(s)	13, 225, 226, 444
PspOMI	GGGCCC	1 cut(s)	224
PspPI	GGNCC	4 cut(s)	224, 225, 712, 719
PspPPI	RGGWCCY	1 cut(s)	719
PspXI	VCTCGAGB	1 cut(s)	520
PsuI	RGATCY	1 cut(s)	442
PsyI	GACNNNGTC	1 cut(s)	688
RsaI	GTAC	3 cut(s)	13, 40, 385
RsaNI	GTAC	3 cut(s)	12, 39, 384
RseI	CAYNNNNRTG	1 cut(s)	163
SalI	GTCGAC	1 cut(s)	853
SaqAI	TTAA	1 cut(s)	789
SatI	GCNGC	1 cut(s)	832
Sau3AI	GATC	5 cut(s)	328, 442, 728, 756, 781
Sau96I	GGNCC	4 cut(s)	224, 225, 712, 719
SchI	GAGTC	4 cut(s)	102, 478, 811, 857
ScrFI	CCNGG	1 cut(s)	62
SduI	GDGCHC	3 cut(s)	228, 424, 527
SfaNI	GCATC	3 cut(s)	180, 402, 635
Sfr274I	CTCGAG	1 cut(s)	520
SfuI	TTCGAA	1 cut(s)	356
SgrAI	CRCCGGYG	1 cut(s)	702
SgrDI	CGTCGACG	1 cut(s)	853
SinI	GGWCC	1 cut(s)	719
SlaI	CTCGAG	1 cut(s)	520
SmiMI	CAYNNNNRTG	1 cut(s)	163
SmlI	CTYRAG	1 cut(s)	520
SmoI	CTYRAG	1 cut(s)	520
SphI	GCATGC	1 cut(s)	197
Sse9I	AATT	1 cut(s)	339
SsiI	CCGC	7 cut(s)	7, 43, 204, 256, 548, 563, 587
SspMI	CTAG	3 cut(s)	137, 210, 378
StyD4I	CCNGG	1 cut(s)	60
StyI	CCWWGG	3 cut(s)	158, 377, 412
TaaI	ACNGT	1 cut(s)	58
TaqI	TCGA	5 cut(s)	356, 361, 521, 727, 854
TaqII	GACCGA	2 cut(s)	379, 749
TasI	AATT	1 cut(s)	339
TatI	WGTACW	1 cut(s)	383
TfiI	GAWTC	2 cut(s)	353, 358
Tru1I	TTAA	1 cut(s)	789
Tru9I	TTAA	1 cut(s)	789
TscAI	CASTG	1 cut(s)	756
TseFI	GTSAC	1 cut(s)	368
TseI	GCWGC	1 cut(s)	831
Tsp45I	GTSAC	1 cut(s)	368
TspDTI	ATGAA	2 cut(s)	40, 89
TspGWI	ACGGA	1 cut(s)	202
TspRI	CASTG	1 cut(s)	756
Tth111I	GACNNNGTC	1 cut(s)	688
Van91I	CCANNNNNTGG	1 cut(s)	220
VpaK11BI	GGWCC	1 cut(s)	719
XceI	RCATGY	1 cut(s)	197
XhoI	CTCGAG	1 cut(s)	520
XmaJI	CCTAGG	1 cut(s)	377
XmiI	GTMKAC	1 cut(s)	854
XspI	CTAG	3 cut(s)	137, 210, 378
Zsp2I	ATGCAT	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.