Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004840

Physical Location & Seq

Genomic Coordinates Forward (+)

10759768 .. 10761150

Gene Structure 1383 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0080500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGGAAACCAAAACAGATCAGCAGCTTCAAATTTTCTTCCTTCCTTTCATGGCTTATGGCCACACTCTACCCCTCACAGACATAGCCAAACTATTCGCTTCCCGTGGTTCCAAATCCACCATTATAACCACCCCTTTCAATGCACCACTCATCTCCAAATCAATCCAATCAAGCAAAAGTTTGGGATTAGAAATTGACCTTCTTGTCATCAAATTTCCATCTATCGAAGTTGGGTTGCCTGAAGGAATTGAAAGTGCAAATTTGGCTACAACCCGGGAGATGAAAGAAAATCTCTACAGAGCCTGCATTCTGCTTGCACCTCAGGTAGAGCAGATTCTAGAACAATATCATCCTCACTGCCTTGTTGCAGACTCTTTATATTATTGGGCTACAGATGTTGCTGCCATGTTTGGGATTCCGAAGCTCATCTTTCACGGACCTGGTTTTTTCGCCCTGTGTGCTTTGAAGAGTGTGATACTCTACCAACCTCACATGAAGGTTTCATCTGATTCAGAATCTTTCGTTATTCCTAGTCTTCCAGATGAGATCAAGACCACAAGAAACCAGGTACCAGCTTATCTCAATCTAGATGGCAAAACAGAACTCACCAAGTTGCTCAAAGCATGTGGAGAGGCTCAGGAGATCGAGGAGCTATGGGAGAAATCATGGCATATCGGCGCGGTTTCTCTATGCAACAAGGCAGAAACAGATAAATCAGAGAGGGGAAGGGGAGGATCTGTTGATGAAGTACACGAGTGCATGAATTGGCTTAATTCTAAGGAACCAAATTCAGTTGTTTATATCTGTTTTGGAAGCCTCACCAATTTCAGTGATTGTCAGCTCATAGAGATTGCCTTGGCTCTTGAGGCTTCTCAGCAGCAATTCATCTGGGTTGTGAAGAAGGAAAAGCATGATAAAGAAGAGTGGTTGCCTAAAGAGTTTGAGCAGAGAATGGAAGGAGTGTCTGCTGGGGTTCCAATGATCACGGTGGCCGGTGTCCGGAGAGCATGGGCTACATTTGAGGAGGAAAGTGCGAAGAGCGAAGCCAGTGTGAAGAGGGAGGCCATAGAGAAGGCTGTCGCTGAAATCATGGTGGGTGATGAAGCAGAGGCAATGAGAAGCAGAGCTAAAGCGCTCATGGGCTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

382

Amino Acids

42.59

Weight (kDa)

5.24

Isoelectric Point (pI)

47.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004840)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g03870 FvH4_2g07542
rosa_chinensis	RchiOBHm_Chr5g0078211
rosa_multiflora	Rmu_sc0000777.1_g000012 Rmu_sc0002148.1_g000027 Rmu_sc0002538.1_g000027 Rmu_sc0002662.1_g000006 Rmu_sc0004277.1_g000060 Rmu_sc0004295.1_g000013 Rmu_sc0004607.1_g000001 Rmu_sc0006862.1_g000010 Rmu_sc0007315.1_g000010 Rmu_sc0007681.1_g000016 Rmu_sc0010265.1_g000010 Rmu_sc0024414.1_g000002 Rmu_sc0025517.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043280 Rroxscaffold_2G00103140 Rroxscaffold_2G00121790 Rroxscaffold_2G00123140 Rroxscaffold_3G00248480 Rroxscaffold_3G00267950 Rroxscaffold_5G00342740 Rroxscaffold_5G00374520 Rroxscaffold_6G00389230
rosa_rugosa	Rorug02G0190000 Rorug06G0080500 Rorug07G0304100
rosa_samantha	Rh4DG074400 Rh4DG074500
rosa_wichuraiana	Rw0G002790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	125
AasI	GACNNNNNNGTC	1 cut(s)	203
Acc65I	GGTACC	1 cut(s)	568
AccB1I	GGYRCC	1 cut(s)	568
AccII	CGCG	1 cut(s)	680
AccIII	TCCGGA	1 cut(s)	999
AciI	CCGC	1 cut(s)	680
AclWI	GGATC	1 cut(s)	742
AcoI	YGGCCR	2 cut(s)	58, 990
AcsI	RAATTY	4 cut(s)	30, 212, 259, 787
AcuI	CTGAAG	1 cut(s)	261
AfaI	GTAC	2 cut(s)	570, 750
AfeI	AGCGCT	1 cut(s)	1134
AfiI	CCNNNNNNNGG	2 cut(s)	411, 999
AgsI	TTSAA	4 cut(s)	29, 139, 251, 466
AjnI	CCWGG	2 cut(s)	439, 564
AluBI	AGCT	6 cut(s)	25, 424, 575, 652, 841, 1127
AluI	AGCT	6 cut(s)	25, 424, 575, 652, 841, 1127
AlwI	GGATC	1 cut(s)	742
AlwNI	CAGNNNCTG	1 cut(s)	303
Ama87I	CYCGRG	1 cut(s)	273
Aor13HI	TCCGGA	1 cut(s)	999
Aor51HI	AGCGCT	1 cut(s)	1134
AoxI	GGCC	3 cut(s)	58, 990, 1062
ApeKI	GCWGC	3 cut(s)	22, 401, 877
ApoI	RAATTY	4 cut(s)	30, 212, 259, 787
Asp718I	GGTACC	1 cut(s)	568
AspLEI	GCGC	2 cut(s)	680, 1135
AspS9I	GGNCC	1 cut(s)	437
AsuC2I	CCSGG	2 cut(s)	274, 275
AsuHPI	GGTGA	3 cut(s)	598, 811, 1109
AvaI	CYCGRG	1 cut(s)	273
AvaII	GGWCC	1 cut(s)	437
AxyI	CCTNAGG	1 cut(s)	321
BalI	TGGCCA	1 cut(s)	60
BanI	GGYRCC	1 cut(s)	568
BauI	CACGAG	1 cut(s)	752
BbsI	GAAGAC	1 cut(s)	527
BbvI	GCAGC	3 cut(s)	34, 388, 889
BccI	CCATC	2 cut(s)	226, 584
BciT130I	CCWGG	2 cut(s)	441, 566
BclI	TGATCA	1 cut(s)	981
BcnI	CCSGG	2 cut(s)	274, 275
BfaI	CTAG	3 cut(s)	338, 531, 587
BfmI	CTRYAG	2 cut(s)	295, 390
BfoI	RGCGCY	1 cut(s)	1136
BisI	GCNGC	3 cut(s)	23, 402, 878
BlsI	GCNGC	3 cut(s)	24, 403, 879
Bme1390I	CCNGG	4 cut(s)	274, 275, 441, 566
Bme18I	GGWCC	1 cut(s)	437
BmeT110I	CYCGRG	1 cut(s)	273
BmgT120I	GGNCC	1 cut(s)	437
BmiI	GGNNCC	4 cut(s)	109, 570, 783, 975
BmrFI	CCNGG	4 cut(s)	274, 275, 441, 566
BpiI	GAAGAC	1 cut(s)	527
Bpu10I	CCTNAGC	1 cut(s)	636
BpuEI	CTTGAG	1 cut(s)	884
BpuMI	CCSGG	2 cut(s)	274, 275
BsaJI	CCNNGG	3 cut(s)	103, 273, 855
BsaWI	WCCGGW	1 cut(s)	999
BsaXI	ACNNNNNCTCC	2 cut(s)	723, 753
Bsc4I	CCNNNNNNNGG	2 cut(s)	411, 999
Bse118I	RCCGGY	1 cut(s)	992
Bse1I	ACTGG	1 cut(s)	1047
Bse21I	CCTNAGG	1 cut(s)	321
Bse3DI	GCAATG	1 cut(s)	1119
BseAI	TCCGGA	1 cut(s)	999
BseBI	CCWGG	2 cut(s)	441, 566
BseDI	CCNNGG	3 cut(s)	103, 273, 855
BseGI	GGATG	1 cut(s)	349
BseLI	CCNNNNNNNGG	2 cut(s)	411, 999
BseMI	GCAATG	1 cut(s)	1119
BseMII	CTCAG	3 cut(s)	335, 650, 887
BseNI	ACTGG	1 cut(s)	1047
BseRI	GAGGAG	2 cut(s)	662, 1037
BseXI	GCAGC	3 cut(s)	34, 388, 889
BseYI	CCCAGC	1 cut(s)	968
Bsh1236I	CGCG	1 cut(s)	680
BshFI	GGCC	3 cut(s)	60, 992, 1064
BshNI	GGYRCC	1 cut(s)	568
BsiHKCI	CYCGRG	1 cut(s)	273
BsiSI	CCGG	3 cut(s)	274, 993, 1000
BslI	CCNNNNNNNGG	2 cut(s)	411, 999
BsmI	GAATGC	1 cut(s)	306
BsnI	GGCC	3 cut(s)	60, 992, 1064
BsoBI	CYCGRG	1 cut(s)	273
Bsp13I	TCCGGA	1 cut(s)	999
Bsp143I	GATC	5 cut(s)	16, 546, 642, 734, 981
BspACI	CCGC	1 cut(s)	680
BspANI	GGCC	3 cut(s)	60, 992, 1064
BspCNI	CTCAG	3 cut(s)	334, 649, 886
BspEI	TCCGGA	1 cut(s)	999
BspFNI	CGCG	1 cut(s)	680
BspLI	GGNNCC	4 cut(s)	109, 570, 783, 975
BspPI	GGATC	1 cut(s)	742
BspQI	GCTCTTC	1 cut(s)	1031
BspT107I	GGYRCC	1 cut(s)	568
BsrDI	GCAATG	1 cut(s)	1119
BsrFI	RCCGGY	1 cut(s)	992
BsrI	ACTGG	1 cut(s)	1047
BssAI	RCCGGY	1 cut(s)	992
BssECI	CCNNGG	3 cut(s)	103, 273, 855
BssMI	GATC	5 cut(s)	16, 546, 642, 734, 981
BssSI	CACGAG	1 cut(s)	752
BssT1I	CCWWGG	1 cut(s)	855
Bst2BI	CACGAG	1 cut(s)	752
Bst2UI	CCWGG	2 cut(s)	441, 566
Bst4CI	ACNGT	1 cut(s)	988
Bst6I	CTCTTC	4 cut(s)	461, 915, 1031, 1049
BstC8I	GCNNGC	2 cut(s)	304, 315
BstDEI	CTNAG	4 cut(s)	321, 636, 777, 873
BstDSI	CCRYGG	1 cut(s)	103
BstF5I	GGATG	1 cut(s)	349
BstFNI	CGCG	1 cut(s)	680
BstH2I	RGCGCY	1 cut(s)	1136
BstHHI	GCGC	2 cut(s)	680, 1135
BstKTI	GATC	5 cut(s)	19, 549, 645, 737, 984
BstMBI	GATC	5 cut(s)	16, 546, 642, 734, 981
BstMWI	GCNNNNNNNGC	3 cut(s)	263, 458, 866
BstNI	CCWGG	2 cut(s)	441, 566
BstNSI	RCATGY	1 cut(s)	627
BstSCI	CCNGG	4 cut(s)	272, 273, 439, 564
BstSFI	CTRYAG	2 cut(s)	295, 390
BstUI	CGCG	1 cut(s)	680
BstV1I	GCAGC	3 cut(s)	34, 388, 889
BstV2I	GAAGAC	1 cut(s)	527
BstX2I	RGATCY	1 cut(s)	734
BstYI	RGATCY	1 cut(s)	734
Bsu36I	CCTNAGG	1 cut(s)	321
BsuRI	GGCC	3 cut(s)	60, 992, 1064
BtgI	CCRYGG	1 cut(s)	103
BtsCI	GGATG	1 cut(s)	349
BtsI	GCAGTG	1 cut(s)	355
BtsIMutI	CAGTG	3 cut(s)	355, 835, 1054
Cac8I	GCNNGC	2 cut(s)	304, 315
CaiI	CAGNNNCTG	1 cut(s)	303
CfoI	GCGC	2 cut(s)	680, 1135
Cfr10I	RCCGGY	1 cut(s)	992
Cfr13I	GGNCC	1 cut(s)	437
Cfr9I	CCCGGG	1 cut(s)	273
CsiI	ACCWGGT	2 cut(s)	439, 564
Csp6I	GTAC	2 cut(s)	569, 749
CspCI	CAANNNNNGTGG	2 cut(s)	607, 642
CviQI	GTAC	2 cut(s)	569, 749
DdeI	CTNAG	4 cut(s)	321, 636, 777, 873
DpnI	GATC	5 cut(s)	18, 548, 644, 736, 983
DpnII	GATC	5 cut(s)	16, 546, 642, 734, 981
DrdI	GACNNNNNNGTC	1 cut(s)	203
DseDI	GACNNNNNNGTC	1 cut(s)	203
EaeI	YGGCCR	2 cut(s)	58, 990
Eam1104I	CTCTTC	4 cut(s)	461, 915, 1031, 1049
EarI	CTCTTC	4 cut(s)	461, 915, 1031, 1049
Eco130I	CCWWGG	1 cut(s)	855
Eco47I	GGWCC	1 cut(s)	437
Eco47III	AGCGCT	1 cut(s)	1134
Eco57I	CTGAAG	1 cut(s)	261
Eco81I	CCTNAGG	1 cut(s)	321
Eco88I	CYCGRG	1 cut(s)	273
EcoRII	CCWGG	2 cut(s)	439, 564
EcoT14I	CCWWGG	1 cut(s)	855
ErhI	CCWWGG	1 cut(s)	855
FalI	AAGNNNNNCTT	2 cut(s)	413, 445
FbaI	TGATCA	1 cut(s)	981
Fnu4HI	GCNGC	3 cut(s)	23, 402, 878
FokI	GGATG	1 cut(s)	336
Fsp4HI	GCNGC	3 cut(s)	23, 402, 878
FspBI	CTAG	3 cut(s)	338, 531, 587
GlaI	GCGC	2 cut(s)	679, 1134
GluI	GCNGC	3 cut(s)	23, 402, 878
GsaI	CCCAGC	1 cut(s)	972
HaeII	RGCGCY	1 cut(s)	1136
HaeIII	GGCC	3 cut(s)	60, 992, 1064
HapII	CCGG	3 cut(s)	274, 993, 1000
HhaI	GCGC	2 cut(s)	680, 1135
Hin6I	GCGC	2 cut(s)	678, 1133
HinP1I	GCGC	2 cut(s)	678, 1133
HinfI	GANTC	5 cut(s)	334, 371, 415, 509, 515
HpaII	CCGG	3 cut(s)	274, 993, 1000
HphI	GGTGA	3 cut(s)	598, 811, 1109
Hpy166II	GTNNAC	1 cut(s)	751
Hpy188I	TCNGA	4 cut(s)	420, 508, 514, 718
Hpy188III	TCNNGA	7 cut(s)	338, 539, 550, 587, 638, 863, 1000
Hpy8I	GTNNAC	1 cut(s)	751
HpyAV	CCTTC	8 cut(s)	50, 209, 236, 490, 720, 895, 950, 1066
HpyCH4III	ACNGT	1 cut(s)	988
HpyCH4V	TGCA	7 cut(s)	143, 257, 306, 317, 368, 693, 759
HpyF10VI	GCNNNNNNNGC	3 cut(s)	263, 458, 866
HpyF3I	CTNAG	4 cut(s)	321, 636, 777, 873
HspAI	GCGC	2 cut(s)	678, 1133
Kpn2I	TCCGGA	1 cut(s)	999
KpnI	GGTACC	1 cut(s)	572
Ksp22I	TGATCA	1 cut(s)	981
Kzo9I	GATC	5 cut(s)	16, 546, 642, 734, 981
LguI	GCTCTTC	1 cut(s)	1031
LmnI	GCTCC	1 cut(s)	649
Lsp1109I	GCAGC	3 cut(s)	34, 388, 889
MabI	ACCWGGT	2 cut(s)	439, 564
MaeI	CTAG	3 cut(s)	338, 531, 587
MalI	GATC	5 cut(s)	18, 548, 644, 736, 983
MboI	GATC	5 cut(s)	16, 546, 642, 734, 981
MboII	GAAGA	7 cut(s)	28, 478, 527, 910, 932, 1048, 1066
MflI	RGATCY	1 cut(s)	734
MlsI	TGGCCA	1 cut(s)	60
MluNI	TGGCCA	1 cut(s)	60
MlyI	GAGTC	1 cut(s)	365
Mox20I	TGGCCA	1 cut(s)	60
MroI	TCCGGA	1 cut(s)	999
MscI	TGGCCA	1 cut(s)	60
MseI	TTAA	1 cut(s)	771
Msp20I	TGGCCA	1 cut(s)	60
MspI	CCGG	3 cut(s)	274, 993, 1000
MspR9I	CCNGG	4 cut(s)	274, 275, 441, 566
Mva1269I	GAATGC	1 cut(s)	306
MvaI	CCWGG	2 cut(s)	441, 566
MvnI	CGCG	1 cut(s)	680
MwoI	GCNNNNNNNGC	3 cut(s)	263, 458, 866
NciI	CCSGG	2 cut(s)	274, 275
NdeII	GATC	5 cut(s)	16, 546, 642, 734, 981
NlaIV	GGNNCC	4 cut(s)	109, 570, 783, 975
NspI	RCATGY	1 cut(s)	627
PciSI	GCTCTTC	1 cut(s)	1031
PctI	GAATGC	1 cut(s)	306
PfeI	GAWTC	4 cut(s)	334, 415, 509, 515
PkrI	GCNGC	3 cut(s)	24, 403, 879
PleI	GAGTC	1 cut(s)	365
PpsI	GAGTC	1 cut(s)	365
PsiI	TTATAA	1 cut(s)	125
Psp6I	CCWGG	2 cut(s)	439, 564
PspFI	CCCAGC	1 cut(s)	968
PspGI	CCWGG	2 cut(s)	439, 564
PspN4I	GGNNCC	4 cut(s)	109, 570, 783, 975
PspPI	GGNCC	1 cut(s)	437
PstNI	CAGNNNCTG	1 cut(s)	303
PsuI	RGATCY	1 cut(s)	734
RsaI	GTAC	2 cut(s)	570, 750
RsaNI	GTAC	2 cut(s)	569, 749
SapI	GCTCTTC	1 cut(s)	1031
SaqAI	TTAA	1 cut(s)	771
SatI	GCNGC	3 cut(s)	23, 402, 878
Sau3AI	GATC	5 cut(s)	16, 546, 642, 734, 981
Sau96I	GGNCC	1 cut(s)	437
SchI	GAGTC	1 cut(s)	365
ScrFI	CCNGG	4 cut(s)	274, 275, 441, 566
SexAI	ACCWGGT	2 cut(s)	439, 564
SfcI	CTRYAG	2 cut(s)	295, 390
SinI	GGWCC	1 cut(s)	437
SmaI	CCCGGG	1 cut(s)	275
SmlI	CTYRAG	1 cut(s)	863
SmoI	CTYRAG	1 cut(s)	863
SsiI	CCGC	1 cut(s)	680
SspMI	CTAG	3 cut(s)	338, 531, 587
StyD4I	CCNGG	4 cut(s)	272, 273, 439, 564
StyI	CCWWGG	1 cut(s)	855
TaaI	ACNGT	1 cut(s)	988
TaqI	TCGA	2 cut(s)	225, 645
TatI	WGTACW	1 cut(s)	748
TfiI	GAWTC	4 cut(s)	334, 415, 509, 515
Tru1I	TTAA	1 cut(s)	771
Tru9I	TTAA	1 cut(s)	771
TscAI	CASTG	3 cut(s)	362, 835, 1054
TseI	GCWGC	3 cut(s)	22, 401, 877
TspDTI	ATGAA	8 cut(s)	37, 296, 492, 509, 759, 776, 874, 1116
TspGWI	ACGGA	1 cut(s)	450
TspMI	CCCGGG	1 cut(s)	273
TspRI	CASTG	3 cut(s)	362, 835, 1054
VpaK11BI	GGWCC	1 cut(s)	437
XapI	RAATTY	4 cut(s)	30, 212, 259, 787
XbaI	TCTAGA	2 cut(s)	337, 586
XceI	RCATGY	1 cut(s)	627
XmaI	CCCGGG	1 cut(s)	273
XspI	CTAG	3 cut(s)	338, 531, 587

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.