Rmu_sc0004607.1_g000001

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004607.1
OG0004840
Physical Location & Seq
Forward (+)
1872 .. 4987
3116 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004607.1_g000001.1.cds

Sequence Viewer

Length: 945 bp
atggtggttgtacgccgtcgtggggtggccagacgttgtccctccagtcggatttctttctcgggtcgcggctggtgtccgggtcagagagcaactagctctctctctctctttgtttttggtctcccgatctccttattggagaggccttggaggtcggcgttgatggcttcttcgctcttggtcatcttggcaagagctcgcgtagggactagtgttattgccggtgtttttcagcagctacaaaagttgataggaaaggaatgtgtagtggaggaaatagtttcccaggaagagggcgtagaaaaattaatgcctgatcagttcttcccagagctaacatgtttggaatttacaagtctattccaacttgagagattctatctaaagatgcctgctatcaactggccactaaaaacattagtgttgtctgattgtcagaaagtggatatctttaccgcggaagtttcaggccttcagaaaacacatgacttggggaatctgcgtactcgggttaaacaatatcatgttctatttgagaagagttcattttccaaactggaagttttgaccttcggccccgcgaacatctggtacggtctacctgcccatgagaaagctctttttcctgctaccagtacagatgggtcccttccacatttgagaacgttgagggtacatggaatggagaagtttatgcgtctctgggagaacaccaaacctgcagctggctcagcttttccaaagatggaaactcttgagatggtggctaatccagagttgatgaagatggcatcagagagcatgaagaacatgaggcctgaagatttgaaaatggctgcagagcaattgaaacacacacgcccggaagagcaatggcgcgtgcgtattgtccttcctcttttgctaagcatatttgaaatgttactcatgagtgcaatataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

314

Amino Acids

35.64

Weight (kDa)

9.42

Isoelectric Point (pI)

54.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 613, 730
AccI GTMKAC 1 cut(s) 601
AccII CGCG 5 cut(s) 69, 204, 461, 584, 882
AciI CCGC 4 cut(s) 69, 459, 461, 582
AclI AACGTT 1 cut(s) 668
AcoI YGGCCR 2 cut(s) 27, 407
AcsI RAATTY 1 cut(s) 350
AcuI CTGAAG 2 cut(s) 461, 843
AfaI GTAC 5 cut(s) 12, 508, 596, 640, 678
AfiI CCNNNNNNNGG 4 cut(s) 22, 48, 295, 728
AflIII ACRYGT 1 cut(s) 341
AgsI TTSAA 3 cut(s) 832, 853, 920
AhlI ACTAGT 1 cut(s) 212
AjnI CCWGG 1 cut(s) 288
AluBI AGCT 7 cut(s) 99, 200, 241, 337, 620, 728, 737
AluI AGCT 7 cut(s) 99, 200, 241, 337, 620, 728, 737
Alw21I GWGCWC 1 cut(s) 202
Alw26I GTCTC 2 cut(s) 128, 707
Ama87I CYCGRG 2 cut(s) 61, 510
AoxI GGCC 6 cut(s) 27, 146, 407, 472, 577, 818
ApeKI GCWGC 3 cut(s) 238, 725, 839
ApoI RAATTY 1 cut(s) 350
AseI ATTAAT 1 cut(s) 311
AspLEI GCGC 1 cut(s) 882
AspS9I GGNCC 2 cut(s) 578, 648
AsuC2I CCSGG 2 cut(s) 81, 866
AvaI CYCGRG 2 cut(s) 61, 510
AvaII GGWCC 1 cut(s) 648
BalI TGGCCA 2 cut(s) 29, 409
BanII GRGCYC 1 cut(s) 202
Bbv12I GWGCWC 1 cut(s) 202
BbvI GCAGC 3 cut(s) 250, 737, 826
BccI CCATC 5 cut(s) 160, 638, 742, 757, 784
BciT130I CCWGG 1 cut(s) 290
BclI TGATCA 1 cut(s) 319
BcnI CCSGG 2 cut(s) 81, 866
BcoDI GTCTC 2 cut(s) 128, 707
BcuI ACTAGT 1 cut(s) 212
BfaI CTAG 2 cut(s) 96, 213
BfmI CTRYAG 2 cut(s) 723, 840
BfuAI ACCTGC 2 cut(s) 613, 730
BisI GCNGC 4 cut(s) 70, 239, 726, 840
BlpI GCTNAGC 2 cut(s) 733, 908
BlsI GCNGC 4 cut(s) 71, 240, 727, 841
Bme1390I CCNGG 3 cut(s) 81, 290, 866
Bme18I GGWCC 1 cut(s) 648
BmeT110I CYCGRG 2 cut(s) 61, 510
BmgT120I GGNCC 2 cut(s) 578, 648
BmiI GGNNCC 3 cut(s) 580, 649, 650
BmrFI CCNGG 3 cut(s) 81, 290, 866
BmsI GCATC 2 cut(s) 381, 803
BpmI CTGGAG 1 cut(s) 28
Bpu1102I GCTNAGC 2 cut(s) 733, 908
BpuEI CTTGAG 2 cut(s) 392, 779
BpuMI CCSGG 2 cut(s) 81, 866
BsaI GGTCTC 1 cut(s) 128
BsaJI CCNNGG 3 cut(s) 149, 288, 459
Bsc4I CCNNNNNNNGG 4 cut(s) 22, 48, 295, 728
Bse118I RCCGGY 1 cut(s) 224
Bse1I ACTGG 4 cut(s) 45, 410, 564, 636
Bse3DI GCAATG 1 cut(s) 881
BseBI CCWGG 1 cut(s) 290
BseDI CCNNGG 3 cut(s) 149, 288, 459
BseLI CCNNNNNNNGG 4 cut(s) 22, 48, 295, 728
BseMI GCAATG 1 cut(s) 881
BseMII CTCAG 1 cut(s) 747
BseNI ACTGG 4 cut(s) 45, 410, 564, 636
BseXI GCAGC 3 cut(s) 250, 737, 826
Bsh1236I CGCG 5 cut(s) 69, 204, 461, 584, 882
BshFI GGCC 6 cut(s) 29, 148, 409, 474, 579, 820
BsiHKAI GWGCWC 1 cut(s) 202
BsiHKCI CYCGRG 2 cut(s) 61, 510
BsiSI CCGG 3 cut(s) 80, 225, 866
BslFI GGGAC 3 cut(s) 24, 223, 634
BslI CCNNNNNNNGG 4 cut(s) 22, 48, 295, 728
BsmAI GTCTC 2 cut(s) 128, 707
BsmBI CGTCTC 1 cut(s) 707
BsmFI GGGAC 3 cut(s) 24, 223, 634
BsnI GGCC 6 cut(s) 29, 148, 409, 474, 579, 820
Bso31I GGTCTC 1 cut(s) 128
BsoBI CYCGRG 2 cut(s) 61, 510
Bsp1286I GDGCHC 1 cut(s) 202
Bsp143I GATC 2 cut(s) 129, 319
Bsp1720I GCTNAGC 2 cut(s) 733, 908
BspACI CCGC 4 cut(s) 69, 459, 461, 582
BspANI GGCC 6 cut(s) 29, 148, 409, 474, 579, 820
BspCNI CTCAG 1 cut(s) 746
BspFNI CGCG 5 cut(s) 69, 204, 461, 584, 882
BspHI TCATGA 1 cut(s) 930
BspLI GGNNCC 3 cut(s) 580, 649, 650
BspMAI CTGCAG 2 cut(s) 727, 844
BspMI ACCTGC 2 cut(s) 613, 730
BspQI GCTCTTC 1 cut(s) 864
BspTNI GGTCTC 1 cut(s) 128
BsrDI GCAATG 1 cut(s) 881
BsrFI RCCGGY 1 cut(s) 224
BsrI ACTGG 4 cut(s) 45, 410, 564, 636
BssAI RCCGGY 1 cut(s) 224
BssECI CCNNGG 3 cut(s) 149, 288, 459
BssMI GATC 2 cut(s) 129, 319
BssT1I CCWWGG 1 cut(s) 149
Bst2UI CCWGG 1 cut(s) 290
Bst4CI ACNGT 1 cut(s) 599
Bst6I CTCTTC 3 cut(s) 288, 536, 864
BstC8I GCNNGC 4 cut(s) 202, 396, 730, 884
BstDEI CTNAG 2 cut(s) 733, 908
BstDSI CCRYGG 1 cut(s) 459
BstFNI CGCG 5 cut(s) 69, 204, 461, 584, 882
BstHHI GCGC 1 cut(s) 882
BstKTI GATC 2 cut(s) 132, 322
BstMAI GTCTC 2 cut(s) 128, 707
BstMBI GATC 2 cut(s) 129, 319
BstMWI GCNNNNNNNGC 2 cut(s) 167, 734
BstNI CCWGG 1 cut(s) 290
BstNSI RCATGY 1 cut(s) 345
BstSCI CCNGG 3 cut(s) 79, 288, 864
BstSFI CTRYAG 2 cut(s) 723, 840
BstUI CGCG 5 cut(s) 69, 204, 461, 584, 882
BstV1I GCAGC 3 cut(s) 250, 737, 826
BsuRI GGCC 6 cut(s) 29, 148, 409, 474, 579, 820
BtgI CCRYGG 1 cut(s) 459
BveI ACCTGC 2 cut(s) 613, 730
Cac8I GCNNGC 4 cut(s) 202, 396, 730, 884
CciI TCATGA 1 cut(s) 930
CfoI GCGC 1 cut(s) 882
Cfr10I RCCGGY 1 cut(s) 224
Cfr13I GGNCC 2 cut(s) 578, 648
Cfr42I CCGCGG 1 cut(s) 462
CseI GACGC 1 cut(s) 689
Csp6I GTAC 5 cut(s) 11, 507, 595, 639, 677
CviAII CATG 8 cut(s) 342, 488, 527, 611, 680, 805, 814, 931
CviQI GTAC 5 cut(s) 11, 507, 595, 639, 677
DdeI CTNAG 2 cut(s) 733, 908
DpnI GATC 2 cut(s) 131, 321
DpnII GATC 2 cut(s) 129, 319
EaeI YGGCCR 2 cut(s) 27, 407
Eam1104I CTCTTC 3 cut(s) 288, 536, 864
EarI CTCTTC 3 cut(s) 288, 536, 864
Ecl136II GAGCTC 1 cut(s) 200
Eco130I CCWWGG 1 cut(s) 149
Eco147I AGGCCT 3 cut(s) 148, 474, 820
Eco24I GRGCYC 1 cut(s) 202
Eco31I GGTCTC 1 cut(s) 128
Eco32I GATATC 1 cut(s) 451
Eco47I GGWCC 1 cut(s) 648
Eco53kI GAGCTC 1 cut(s) 200
Eco57I CTGAAG 2 cut(s) 461, 843
Eco88I CYCGRG 2 cut(s) 61, 510
EcoICRI GAGCTC 1 cut(s) 200
EcoO109I RGGNCCY 1 cut(s) 648
EcoRII CCWGG 1 cut(s) 288
EcoRV GATATC 1 cut(s) 451
EcoT14I CCWWGG 1 cut(s) 149
EcoT38I GRGCYC 1 cut(s) 202
ErhI CCWWGG 1 cut(s) 149
Esp3I CGTCTC 1 cut(s) 707
FaeI CATG 8 cut(s) 345, 491, 530, 614, 683, 808, 817, 934
FaqI GGGAC 3 cut(s) 24, 223, 634
FatI CATG 8 cut(s) 341, 487, 526, 610, 679, 804, 813, 930
FauI CCCGC 1 cut(s) 589
FbaI TGATCA 1 cut(s) 319
FblI GTMKAC 1 cut(s) 601
Fnu4HI GCNGC 4 cut(s) 70, 239, 726, 840
FriOI GRGCYC 1 cut(s) 202
Fsp4HI GCNGC 4 cut(s) 70, 239, 726, 840
FspBI CTAG 2 cut(s) 96, 213
GlaI GCGC 1 cut(s) 881
GluI GCNGC 4 cut(s) 70, 239, 726, 840
GsuI CTGGAG 1 cut(s) 28
HaeIII GGCC 6 cut(s) 29, 148, 409, 474, 579, 820
HapII CCGG 3 cut(s) 80, 225, 866
HgaI GACGC 1 cut(s) 689
HhaI GCGC 1 cut(s) 882
Hin1II CATG 8 cut(s) 345, 491, 530, 614, 683, 808, 817, 934
Hin6I GCGC 1 cut(s) 880
HinP1I GCGC 1 cut(s) 880
HinfI GANTC 2 cut(s) 378, 499
HpaII CCGG 3 cut(s) 80, 225, 866
Hpy166II GTNNAC 1 cut(s) 602
Hpy188I TCNGA 6 cut(s) 51, 87, 433, 441, 480, 799
Hpy188III TCNNGA 4 cut(s) 127, 758, 776, 931
Hpy8I GTNNAC 1 cut(s) 602
Hpy99I CGWCG 1 cut(s) 21
HpyAV CCTTC 4 cut(s) 485, 583, 662, 905
HpyCH4III ACNGT 1 cut(s) 599
HpyCH4IV ACGT 2 cut(s) 34, 668
HpyCH4V TGCA 3 cut(s) 725, 842, 938
HpyF10VI GCNNNNNNNGC 2 cut(s) 167, 734
HpyF3I CTNAG 2 cut(s) 733, 908
HpySE526I ACGT 2 cut(s) 34, 668
Hsp92II CATG 8 cut(s) 345, 491, 530, 614, 683, 808, 817, 934
HspAI GCGC 1 cut(s) 880
KflI GGGWCCC 1 cut(s) 648
Ksp22I TGATCA 1 cut(s) 319
KspI CCGCGG 1 cut(s) 462
Kzo9I GATC 2 cut(s) 129, 319
LguI GCTCTTC 1 cut(s) 864
Lsp1109I GCAGC 3 cut(s) 250, 737, 826
LweI GCATC 2 cut(s) 381, 803
MaeI CTAG 2 cut(s) 96, 213
MaeII ACGT 2 cut(s) 34, 668
MaeIII GTNAC 1 cut(s) 924
MalI GATC 2 cut(s) 131, 321
MboI GATC 2 cut(s) 129, 319
MboII GAAGA 8 cut(s) 165, 305, 319, 553, 799, 820, 836, 881
MfeI CAATTG 1 cut(s) 848
MhlI GDGCHC 1 cut(s) 202
MlsI TGGCCA 2 cut(s) 29, 409
MluCI AATT 3 cut(s) 308, 350, 848
MluNI TGGCCA 2 cut(s) 29, 409
MmeI TCCRAC 2 cut(s) 29, 391
MnlI CCTC 8 cut(s) 52, 138, 147, 268, 289, 666, 810, 909
Mox20I TGGCCA 2 cut(s) 29, 409
MscI TGGCCA 2 cut(s) 29, 409
MseI TTAA 2 cut(s) 311, 516
Msp20I TGGCCA 2 cut(s) 29, 409
MspA1I CMGCKG 2 cut(s) 461, 728
MspI CCGG 3 cut(s) 80, 225, 866
MspR9I CCNGG 3 cut(s) 81, 290, 866
MunI CAATTG 1 cut(s) 848
MvaI CCWGG 1 cut(s) 290
MvnI CGCG 5 cut(s) 69, 204, 461, 584, 882
MwoI GCNNNNNNNGC 2 cut(s) 167, 734
NciI CCSGG 2 cut(s) 81, 866
NdeII GATC 2 cut(s) 129, 319
NlaIII CATG 8 cut(s) 345, 491, 530, 614, 683, 808, 817, 934
NlaIV GGNNCC 3 cut(s) 580, 649, 650
NspI RCATGY 1 cut(s) 345
PagI TCATGA 1 cut(s) 930
PceI AGGCCT 3 cut(s) 148, 474, 820
PciI ACATGT 1 cut(s) 341
PciSI GCTCTTC 1 cut(s) 864
PfeI GAWTC 2 cut(s) 378, 499
PflFI GACNNNGTC 1 cut(s) 36
PkrI GCNGC 4 cut(s) 71, 240, 727, 841
PpuMI RGGWCCY 1 cut(s) 648
PscI ACATGT 1 cut(s) 341
PshBI ATTAAT 1 cut(s) 311
Psp124BI GAGCTC 1 cut(s) 202
Psp1406I AACGTT 1 cut(s) 668
Psp5II RGGWCCY 1 cut(s) 648
Psp6I CCWGG 1 cut(s) 288
PspGI CCWGG 1 cut(s) 288
PspN4I GGNNCC 3 cut(s) 580, 649, 650
PspPI GGNCC 2 cut(s) 578, 648
PspPPI RGGWCCY 1 cut(s) 648
PsrI GAACNNNNNNTAC 2 cut(s) 578, 610
PstI CTGCAG 2 cut(s) 727, 844
PsyI GACNNNGTC 1 cut(s) 36
PvuII CAGCTG 1 cut(s) 728
RsaI GTAC 5 cut(s) 12, 508, 596, 640, 678
RsaNI GTAC 5 cut(s) 11, 507, 595, 639, 677
SacI GAGCTC 1 cut(s) 202
SacII CCGCGG 1 cut(s) 462
SapI GCTCTTC 1 cut(s) 864
SaqAI TTAA 2 cut(s) 311, 516
SatI GCNGC 4 cut(s) 70, 239, 726, 840
Sau3AI GATC 2 cut(s) 129, 319
Sau96I GGNCC 2 cut(s) 578, 648
ScrFI CCNGG 3 cut(s) 81, 290, 866
SduI GDGCHC 1 cut(s) 202
SfaNI GCATC 2 cut(s) 381, 803
SfcI CTRYAG 2 cut(s) 723, 840
Sfr303I CCGCGG 1 cut(s) 462
SgrBI CCGCGG 1 cut(s) 462
SinI GGWCC 1 cut(s) 648
SmlI CTYRAG 2 cut(s) 371, 758
SmoI CTYRAG 2 cut(s) 371, 758
SpeI ACTAGT 1 cut(s) 212
Sse9I AATT 3 cut(s) 308, 350, 848
SseBI AGGCCT 3 cut(s) 148, 474, 820
SsiI CCGC 4 cut(s) 69, 459, 461, 582
SspMI CTAG 2 cut(s) 96, 213
SstI GAGCTC 1 cut(s) 202
StuI AGGCCT 3 cut(s) 148, 474, 820
StyD4I CCNGG 3 cut(s) 79, 288, 864
StyI CCWWGG 1 cut(s) 149
TaaI ACNGT 1 cut(s) 599
TaiI ACGT 2 cut(s) 37, 671
TasI AATT 3 cut(s) 308, 350, 848
TatI WGTACW 1 cut(s) 638
TauI GCSGC 1 cut(s) 72
TfiI GAWTC 2 cut(s) 378, 499
Tru1I TTAA 2 cut(s) 311, 516
Tru9I TTAA 2 cut(s) 311, 516
TseI GCWGC 3 cut(s) 238, 725, 839
TspDTI ATGAA 3 cut(s) 537, 800, 821
Tth111I GACNNNGTC 1 cut(s) 36
VpaK11BI GGWCC 1 cut(s) 648
VspI ATTAAT 1 cut(s) 311
XapI RAATTY 1 cut(s) 350
XceI RCATGY 1 cut(s) 345
XmiI GTMKAC 1 cut(s) 601
XspI CTAG 2 cut(s) 96, 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.