Rmu_sc0010265.1_g000010

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010265.1
OG0004840
Physical Location & Seq
Reverse (-)
46529 .. 46992
464 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010265.1_g000010.1.cds

Sequence Viewer

Length: 417 bp
atgcatgccataggctgggctaaccatgccgaggggcccacctatgaggtcgttgattatgcttggcgagaaactgatgctagaaagaatgcgtccaaaggtacctatatacctggaaaacaccgtacggtggccgccctgaactaccagccggccacctatgatccctattatcaaggtgaagaggttttccaggatgaagatgatgaggaggagaatgacgtttccgcatttgagctgacaggaaggaagaactcagccctaaaggagttgaaaatatctaaagaacctatcaaacccaagtctgtagccttcaccaaacctgagttcgcgacgtatacatatgatgccaacaaggcacatgagattttagatgagatgctcaccgcaaaaatgttaaagtctgatttcagctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

15.72

Weight (kDa)

4.99

Isoelectric Point (pI)

31.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 101
AccB1I GGYRCC 1 cut(s) 101
AccB7I CCANNNNNTGG 1 cut(s) 15
AccI GTMKAC 1 cut(s) 338
AccII CGCG 1 cut(s) 332
AciI CCGC 3 cut(s) 135, 228, 387
AclWI GGATC 1 cut(s) 158
AcoI YGGCCR 2 cut(s) 132, 153
AfaI GTAC 2 cut(s) 103, 127
AfiI CCNNNNNNNGG 3 cut(s) 15, 31, 130
AgsI TTSAA 1 cut(s) 274
AjnI CCWGG 2 cut(s) 112, 192
AjuI GAANNNNNNNTTGG 2 cut(s) 311, 343
AluBI AGCT 2 cut(s) 238, 414
AluI AGCT 2 cut(s) 238, 414
AlwI GGATC 1 cut(s) 158
AoxI GGCC 3 cut(s) 35, 132, 153
ApaI GGGCCC 1 cut(s) 39
Asp718I GGTACC 1 cut(s) 101
AspS9I GGNCC 2 cut(s) 35, 36
AsuHPI GGTGA 3 cut(s) 191, 307, 376
BaeGI GKGCMC 1 cut(s) 39
BanI GGYRCC 1 cut(s) 101
BanII GRGCYC 1 cut(s) 39
BciT130I CCWGG 2 cut(s) 114, 194
BfaI CTAG 1 cut(s) 81
BfmI CTRYAG 1 cut(s) 306
BglI GCCNNNNNGGC 1 cut(s) 356
BisI GCNGC 1 cut(s) 135
BlsI GCNGC 1 cut(s) 136
Bme1390I CCNGG 2 cut(s) 114, 194
BmgT120I GGNCC 2 cut(s) 35, 36
BmiI GGNNCC 3 cut(s) 36, 37, 103
BmrFI CCNGG 2 cut(s) 114, 194
BmsI GCATC 3 cut(s) 67, 337, 369
BsaJI CCNNGG 1 cut(s) 30
Bsc4I CCNNNNNNNGG 3 cut(s) 15, 31, 130
Bse118I RCCGGY 1 cut(s) 151
BseBI CCWGG 2 cut(s) 114, 194
BseDI CCNNGG 1 cut(s) 30
BseGI GGATG 1 cut(s) 202
BseLI CCNNNNNNNGG 3 cut(s) 15, 31, 130
BseMII CTCAG 2 cut(s) 270, 315
BseRI GAGGAG 2 cut(s) 224, 227
BseSI GKGCMC 1 cut(s) 39
BseYI CCCAGC 1 cut(s) 15
Bsh1236I CGCG 1 cut(s) 332
BshFI GGCC 3 cut(s) 37, 134, 155
BshNI GGYRCC 1 cut(s) 101
BsiSI CCGG 1 cut(s) 152
BsiWI CGTACG 1 cut(s) 125
BslI CCNNNNNNNGG 3 cut(s) 15, 31, 130
BsmI GAATGC 1 cut(s) 94
BsnI GGCC 3 cut(s) 37, 134, 155
Bsp120I GGGCCC 1 cut(s) 35
Bsp1286I GDGCHC 1 cut(s) 39
Bsp143I GATC 1 cut(s) 163
Bsp68I TCGCGA 1 cut(s) 332
BspACI CCGC 3 cut(s) 135, 228, 387
BspANI GGCC 3 cut(s) 37, 134, 155
BspCNI CTCAG 2 cut(s) 269, 316
BspFNI CGCG 1 cut(s) 332
BspLI GGNNCC 3 cut(s) 36, 37, 103
BspPI GGATC 1 cut(s) 158
BspT107I GGYRCC 1 cut(s) 101
BsrFI RCCGGY 1 cut(s) 151
BssAI RCCGGY 1 cut(s) 151
BssECI CCNNGG 1 cut(s) 30
BssMI GATC 1 cut(s) 163
BssNAI GTATAC 1 cut(s) 339
Bst1107I GTATAC 1 cut(s) 339
Bst2UI CCWGG 2 cut(s) 114, 194
Bst4CI ACNGT 2 cut(s) 125, 130
Bst6I CTCTTC 1 cut(s) 177
BstC8I GCNNGC 2 cut(s) 6, 153
BstDEI CTNAG 2 cut(s) 256, 324
BstF5I GGATG 1 cut(s) 202
BstFNI CGCG 1 cut(s) 332
BstKTI GATC 1 cut(s) 166
BstMBI GATC 1 cut(s) 163
BstMWI GCNNNNNNNGC 2 cut(s) 26, 356
BstNI CCWGG 2 cut(s) 114, 194
BstNSI RCATGY 1 cut(s) 8
BstSCI CCNGG 2 cut(s) 112, 192
BstSFI CTRYAG 1 cut(s) 306
BstSLI GKGCMC 1 cut(s) 39
BstUI CGCG 1 cut(s) 332
BstZ17I GTATAC 1 cut(s) 339
BsuRI GGCC 3 cut(s) 37, 134, 155
BtsCI GGATG 1 cut(s) 202
BtuMI TCGCGA 1 cut(s) 332
Cac8I GCNNGC 2 cut(s) 6, 153
Cfr10I RCCGGY 1 cut(s) 151
Cfr13I GGNCC 2 cut(s) 35, 36
CseI GACGC 1 cut(s) 81
Csp6I GTAC 2 cut(s) 102, 126
CviAII CATG 3 cut(s) 5, 26, 362
CviQI GTAC 2 cut(s) 102, 126
DdeI CTNAG 2 cut(s) 256, 324
DpnI GATC 1 cut(s) 165
DpnII GATC 1 cut(s) 163
EaeI YGGCCR 2 cut(s) 132, 153
Eam1104I CTCTTC 1 cut(s) 177
EarI CTCTTC 1 cut(s) 177
Eco24I GRGCYC 1 cut(s) 39
EcoO109I RGGNCCY 1 cut(s) 35
EcoRII CCWGG 2 cut(s) 112, 192
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 39
FaeI CATG 3 cut(s) 8, 29, 365
FatI CATG 3 cut(s) 4, 25, 361
FauNDI CATATG 1 cut(s) 343
FblI GTMKAC 1 cut(s) 338
Fnu4HI GCNGC 1 cut(s) 135
FokI GGATG 1 cut(s) 209
FriOI GRGCYC 1 cut(s) 39
Fsp4HI GCNGC 1 cut(s) 135
FspBI CTAG 1 cut(s) 81
GluI GCNGC 1 cut(s) 135
GsaI CCCAGC 1 cut(s) 19
HaeIII GGCC 3 cut(s) 37, 134, 155
HapII CCGG 1 cut(s) 152
HgaI GACGC 1 cut(s) 81
Hin1II CATG 3 cut(s) 8, 29, 365
HpaII CCGG 1 cut(s) 152
HphI GGTGA 3 cut(s) 191, 307, 376
Hpy166II GTNNAC 1 cut(s) 339
Hpy188I TCNGA 1 cut(s) 406
Hpy188III TCNNGA 1 cut(s) 331
Hpy8I GTNNAC 1 cut(s) 339
Hpy99I CGWCG 1 cut(s) 337
HpyAV CCTTC 2 cut(s) 240, 322
HpyCH4III ACNGT 2 cut(s) 125, 130
HpyCH4IV ACGT 2 cut(s) 222, 335
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 356
HpyF3I CTNAG 2 cut(s) 256, 324
HpySE526I ACGT 2 cut(s) 222, 335
Hsp92II CATG 3 cut(s) 8, 29, 365
KpnI GGTACC 1 cut(s) 105
KroI GCCGGC 1 cut(s) 151
KroNI GCCGGC 1 cut(s) 153
Kzo9I GATC 1 cut(s) 163
LpnPI CCDG 9 cut(s) 99, 126, 152, 161, 165, 179, 206, 228, 336
LweI GCATC 3 cut(s) 67, 337, 369
MaeI CTAG 1 cut(s) 81
MaeII ACGT 2 cut(s) 222, 335
MalI GATC 1 cut(s) 165
MboI GATC 1 cut(s) 163
MboII GAAGA 3 cut(s) 194, 212, 262
MhlI GDGCHC 1 cut(s) 39
MnlI CCTC 5 cut(s) 25, 40, 178, 202, 205
Mph1103I ATGCAT 1 cut(s) 6
MroNI GCCGGC 1 cut(s) 151
MseI TTAA 1 cut(s) 398
MspA1I CMGCKG 1 cut(s) 414
MspI CCGG 1 cut(s) 152
MspR9I CCNGG 2 cut(s) 114, 194
Mva1269I GAATGC 1 cut(s) 94
MvaI CCWGG 2 cut(s) 114, 194
MvnI CGCG 1 cut(s) 332
MwoI GCNNNNNNNGC 2 cut(s) 26, 356
NaeI GCCGGC 1 cut(s) 153
NdeI CATATG 1 cut(s) 343
NdeII GATC 1 cut(s) 163
NgoMIV GCCGGC 1 cut(s) 151
NlaIII CATG 3 cut(s) 8, 29, 365
NlaIV GGNNCC 3 cut(s) 36, 37, 103
NmeAIII GCCGAG 1 cut(s) 55
NruI TCGCGA 1 cut(s) 332
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 8
PaeI GCATGC 1 cut(s) 8
PctI GAATGC 1 cut(s) 94
PdiI GCCGGC 1 cut(s) 153
Pfl23II CGTACG 1 cut(s) 125
PflMI CCANNNNNTGG 1 cut(s) 15
PfoI TCCNGGA 1 cut(s) 192
PkrI GCNGC 1 cut(s) 136
Psp6I CCWGG 2 cut(s) 112, 192
PspFI CCCAGC 1 cut(s) 15
PspGI CCWGG 2 cut(s) 112, 192
PspLI CGTACG 1 cut(s) 125
PspN4I GGNNCC 3 cut(s) 36, 37, 103
PspOMI GGGCCC 1 cut(s) 35
PspPI GGNCC 2 cut(s) 35, 36
PvuII CAGCTG 1 cut(s) 414
RruI TCGCGA 1 cut(s) 332
RsaI GTAC 2 cut(s) 103, 127
RsaNI GTAC 2 cut(s) 102, 126
SaqAI TTAA 1 cut(s) 398
SatI GCNGC 1 cut(s) 135
Sau3AI GATC 1 cut(s) 163
Sau96I GGNCC 2 cut(s) 35, 36
ScrFI CCNGG 2 cut(s) 114, 194
SduI GDGCHC 1 cut(s) 39
SfaNI GCATC 3 cut(s) 67, 337, 369
SfcI CTRYAG 1 cut(s) 306
SphI GCATGC 1 cut(s) 8
SsiI CCGC 3 cut(s) 135, 228, 387
SspMI CTAG 1 cut(s) 81
StyD4I CCNGG 2 cut(s) 112, 192
TaaI ACNGT 2 cut(s) 125, 130
TaiI ACGT 2 cut(s) 225, 338
TauI GCSGC 1 cut(s) 137
Tru1I TTAA 1 cut(s) 398
Tru9I TTAA 1 cut(s) 398
TspDTI ATGAA 1 cut(s) 213
Van91I CCANNNNNTGG 1 cut(s) 15
XceI RCATGY 1 cut(s) 8
XmiI GTMKAC 1 cut(s) 338
XspI CTAG 1 cut(s) 81
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.