Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007681.1

Orthogroup ID

OG0004840

Physical Location & Seq

Genomic Coordinates Forward (+)

59789 .. 64025

Gene Structure 4237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007681.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

atgagggaaatcaaggtccagaagctcgtcctcaacatctctgtcagcgagagcggcgatcgtctcaccaaggccgccaaggtctttggagcaactcaccaaggccgccaagctggggctgcaggaataattgtatccaatcatggagctcggcaactagattatgtccctgcaactactatggctttggaagagtacccgttgactcagagtacccgctgggcccttggaggcttgggtgaggttaagggtgaggggtgccctgtatgtacccatgtacctggtgactcgcgcctcttggagagcatgggagagtggcctcctagcaagataccggccgaccttcaccatggcgacgtagctcgggtgtcggtctccaggatgtatgtcgtaggtgggacttaccatgtcgtgagggccatctacgaggttgttgcttatgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003973 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0008150 GO:0008152 GO:0008891 GO:0009853 GO:0009987 GO:0010109 GO:0016032 GO:0016491 GO:0016614 GO:0016899 GO:0019048 GO:0019222 GO:0031323 GO:0035821 GO:0042579 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044003 GO:0044237 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051701 GO:0051704 GO:0051817 GO:0055114 GO:0065007

KEGG Pathways

Metabolic & Signaling

ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko04146 map00630 map01100 map01110 map01120 map01130 map01200 map04146

Pfam Domains

Protein Families

FMN_dh

Protein Analysis

148

Amino Acids

15.9

Weight (kDa)

7.84

Isoelectric Point (pI)

38.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004840)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g03870 FvH4_2g07542
rosa_chinensis	RchiOBHm_Chr5g0078211
rosa_multiflora	Rmu_sc0000777.1_g000012 Rmu_sc0002148.1_g000027 Rmu_sc0002538.1_g000027 Rmu_sc0002662.1_g000006 Rmu_sc0004277.1_g000060 Rmu_sc0004295.1_g000013 Rmu_sc0004607.1_g000001 Rmu_sc0006862.1_g000010 Rmu_sc0007315.1_g000010 Rmu_sc0007681.1_g000016 Rmu_sc0010265.1_g000010 Rmu_sc0024414.1_g000002 Rmu_sc0025517.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043280 Rroxscaffold_2G00103140 Rroxscaffold_2G00121790 Rroxscaffold_2G00123140 Rroxscaffold_3G00248480 Rroxscaffold_3G00267950 Rroxscaffold_5G00342740 Rroxscaffold_5G00374520 Rroxscaffold_6G00389230
rosa_rugosa	Rorug02G0190000 Rorug06G0080500 Rorug07G0304100
rosa_samantha	Rh4DG074400 Rh4DG074500
rosa_wichuraiana	Rw0G002790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	258
AccBSI	CCGCTC	1 cut(s)	54
AccII	CGCG	1 cut(s)	292
AciI	CCGC	4 cut(s)	54, 75, 106, 217
AcoI	YGGCCR	1 cut(s)	336
AfaI	GTAC	4 cut(s)	197, 214, 271, 279
AfiI	CCNNNNNNNGG	1 cut(s)	115
AjnI	CCWGG	2 cut(s)	280, 377
AluBI	AGCT	4 cut(s)	25, 113, 149, 362
AluI	AGCT	4 cut(s)	25, 113, 149, 362
Alw21I	GWGCWC	1 cut(s)	151
Alw26I	GTCTC	2 cut(s)	68, 379
Ama87I	CYCGRG	1 cut(s)	363
AoxI	GGCC	6 cut(s)	72, 103, 222, 317, 336, 417
ApaI	GGGCCC	1 cut(s)	226
ApeKI	GCWGC	1 cut(s)	119
AspLEI	GCGC	1 cut(s)	294
AspS9I	GGNCC	4 cut(s)	16, 222, 223, 417
AsuHPI	GGTGA	6 cut(s)	58, 89, 251, 263, 296, 338
AvaI	CYCGRG	1 cut(s)	363
AvaII	GGWCC	1 cut(s)	16
BaeGI	GKGCMC	2 cut(s)	226, 263
BaeI	ACNNNNGTAYC	2 cut(s)	261, 294
BanI	GGYRCC	1 cut(s)	258
BanII	GRGCYC	2 cut(s)	151, 226
Bbv12I	GWGCWC	1 cut(s)	151
BbvI	GCAGC	1 cut(s)	106
BccI	CCATC	1 cut(s)	428
BcgI	CGANNNNNNTGC	1 cut(s)	416
BciT130I	CCWGG	2 cut(s)	282, 379
BciVI	GTATCC	1 cut(s)	145
BcoDI	GTCTC	2 cut(s)	68, 379
BfaI	CTAG	2 cut(s)	158, 324
BfmI	CTRYAG	1 cut(s)	120
BfuI	GTATCC	1 cut(s)	145
BisI	GCNGC	4 cut(s)	55, 75, 106, 120
BlsI	GCNGC	4 cut(s)	56, 76, 107, 121
Bme1390I	CCNGG	2 cut(s)	282, 379
Bme18I	GGWCC	1 cut(s)	16
BmeT110I	CYCGRG	1 cut(s)	363
BmgT120I	GGNCC	4 cut(s)	16, 222, 223, 417
BmiI	GGNNCC	2 cut(s)	224, 260
BmrFI	CCNGG	2 cut(s)	282, 379
BpmI	CTGGAG	1 cut(s)	361
BsaI	GGTCTC	1 cut(s)	379
BsaJI	CCNNGG	5 cut(s)	69, 78, 100, 226, 349
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
Bse118I	RCCGGY	1 cut(s)	334
BseBI	CCWGG	2 cut(s)	282, 379
BseDI	CCNNGG	5 cut(s)	69, 78, 100, 226, 349
BseGI	GGATG	1 cut(s)	387
BseLI	CCNNNNNNNGG	1 cut(s)	115
BseMII	CTCAG	1 cut(s)	221
BseSI	GKGCMC	2 cut(s)	226, 263
BseX3I	CGGCCG	1 cut(s)	336
BseXI	GCAGC	1 cut(s)	106
BseYI	CCCAGC	2 cut(s)	113, 219
Bsh1236I	CGCG	1 cut(s)	292
Bsh1285I	CGRYCG	2 cut(s)	61, 339
BshFI	GGCC	6 cut(s)	74, 105, 224, 319, 338, 419
BshNI	GGYRCC	1 cut(s)	258
BsiEI	CGRYCG	2 cut(s)	61, 339
BsiHKAI	GWGCWC	1 cut(s)	151
BsiHKCI	CYCGRG	1 cut(s)	363
BsiSI	CCGG	1 cut(s)	335
BslFI	GGGAC	2 cut(s)	152, 412
BslI	CCNNNNNNNGG	1 cut(s)	115
BsmAI	GTCTC	2 cut(s)	68, 379
BsmBI	CGTCTC	1 cut(s)	68
BsmFI	GGGAC	2 cut(s)	152, 412
BsnI	GGCC	6 cut(s)	74, 105, 224, 319, 338, 419
Bso31I	GGTCTC	1 cut(s)	379
BsoBI	CYCGRG	1 cut(s)	363
Bsp120I	GGGCCC	1 cut(s)	222
Bsp1286I	GDGCHC	3 cut(s)	151, 226, 263
Bsp143I	GATC	1 cut(s)	58
Bsp19I	CCATGG	1 cut(s)	349
BspACI	CCGC	4 cut(s)	54, 75, 106, 217
BspANI	GGCC	6 cut(s)	74, 105, 224, 319, 338, 419
BspCNI	CTCAG	1 cut(s)	220
BspFNI	CGCG	1 cut(s)	292
BspLI	GGNNCC	2 cut(s)	224, 260
BspMAI	CTGCAG	1 cut(s)	124
BspT107I	GGYRCC	1 cut(s)	258
BspTNI	GGTCTC	1 cut(s)	379
BsrBI	CCGCTC	1 cut(s)	54
BsrFI	RCCGGY	1 cut(s)	334
BssAI	RCCGGY	1 cut(s)	334
BssECI	CCNNGG	5 cut(s)	69, 78, 100, 226, 349
BssMI	GATC	1 cut(s)	58
BssT1I	CCWWGG	5 cut(s)	69, 78, 100, 226, 349
Bst2UI	CCWGG	2 cut(s)	282, 379
Bst6I	CTCTTC	1 cut(s)	186
BstDEI	CTNAG	1 cut(s)	207
BstDSI	CCRYGG	1 cut(s)	349
BstF5I	GGATG	1 cut(s)	387
BstFNI	CGCG	1 cut(s)	292
BstHHI	GCGC	1 cut(s)	294
BstKTI	GATC	1 cut(s)	61
BstMAI	GTCTC	2 cut(s)	68, 379
BstMBI	GATC	1 cut(s)	58
BstMCI	CGRYCG	2 cut(s)	61, 339
BstMWI	GCNNNNNNNGC	2 cut(s)	54, 119
BstNI	CCWGG	2 cut(s)	282, 379
BstSCI	CCNGG	2 cut(s)	280, 377
BstSFI	CTRYAG	1 cut(s)	120
BstSLI	GKGCMC	2 cut(s)	226, 263
BstUI	CGCG	1 cut(s)	292
BstV1I	GCAGC	1 cut(s)	106
BstXI	CCANNNNNNTGG	1 cut(s)	281
BstZI	CGGCCG	1 cut(s)	336
BsuI	GTATCC	1 cut(s)	145
BsuRI	GGCC	6 cut(s)	74, 105, 224, 319, 338, 419
BtgI	CCRYGG	1 cut(s)	349
BtsCI	GGATG	1 cut(s)	387
CfoI	GCGC	1 cut(s)	294
Cfr10I	RCCGGY	1 cut(s)	334
Cfr13I	GGNCC	4 cut(s)	16, 222, 223, 417
CsiI	ACCWGGT	1 cut(s)	280
Csp6I	GTAC	4 cut(s)	196, 213, 270, 278
CviAII	CATG	5 cut(s)	143, 275, 307, 350, 407
CviQI	GTAC	4 cut(s)	196, 213, 270, 278
DdeI	CTNAG	1 cut(s)	207
DpnI	GATC	1 cut(s)	60
DpnII	GATC	1 cut(s)	58
EaeI	YGGCCR	1 cut(s)	336
EagI	CGGCCG	1 cut(s)	336
Eam1104I	CTCTTC	1 cut(s)	186
EarI	CTCTTC	1 cut(s)	186
Ecl136II	GAGCTC	1 cut(s)	149
EclXI	CGGCCG	1 cut(s)	336
Eco130I	CCWWGG	5 cut(s)	69, 78, 100, 226, 349
Eco24I	GRGCYC	2 cut(s)	151, 226
Eco31I	GGTCTC	1 cut(s)	379
Eco47I	GGWCC	1 cut(s)	16
Eco52I	CGGCCG	1 cut(s)	336
Eco53kI	GAGCTC	1 cut(s)	149
Eco88I	CYCGRG	1 cut(s)	363
EcoICRI	GAGCTC	1 cut(s)	149
EcoO109I	RGGNCCY	1 cut(s)	223
EcoRII	CCWGG	2 cut(s)	280, 377
EcoT14I	CCWWGG	5 cut(s)	69, 78, 100, 226, 349
EcoT38I	GRGCYC	2 cut(s)	151, 226
ErhI	CCWWGG	5 cut(s)	69, 78, 100, 226, 349
Esp3I	CGTCTC	1 cut(s)	68
FaeI	CATG	5 cut(s)	146, 278, 310, 353, 410
FaqI	GGGAC	2 cut(s)	152, 412
FatI	CATG	5 cut(s)	142, 274, 306, 349, 406
FauI	CCCGC	1 cut(s)	224
Fnu4HI	GCNGC	4 cut(s)	55, 75, 106, 120
FokI	GGATG	1 cut(s)	394
FriOI	GRGCYC	2 cut(s)	151, 226
Fsp4HI	GCNGC	4 cut(s)	55, 75, 106, 120
FspBI	CTAG	2 cut(s)	158, 324
GlaI	GCGC	1 cut(s)	293
GluI	GCNGC	4 cut(s)	55, 75, 106, 120
GsaI	CCCAGC	2 cut(s)	117, 223
GsuI	CTGGAG	1 cut(s)	361
HaeIII	GGCC	6 cut(s)	74, 105, 224, 319, 338, 419
HapII	CCGG	1 cut(s)	335
HhaI	GCGC	1 cut(s)	294
Hin1II	CATG	5 cut(s)	146, 278, 310, 353, 410
Hin6I	GCGC	1 cut(s)	292
HinP1I	GCGC	1 cut(s)	292
HincII	GTYRAC	1 cut(s)	204
HindII	GTYRAC	1 cut(s)	204
HinfI	GANTC	2 cut(s)	205, 287
HpaII	CCGG	1 cut(s)	335
HphI	GGTGA	6 cut(s)	58, 89, 251, 263, 296, 338
Hpy166II	GTNNAC	1 cut(s)	204
Hpy188I	TCNGA	1 cut(s)	210
Hpy188III	TCNNGA	2 cut(s)	19, 412
Hpy8I	GTNNAC	1 cut(s)	204
Hpy99I	CGWCG	1 cut(s)	359
HpyAV	CCTTC	1 cut(s)	353
HpyCH4IV	ACGT	1 cut(s)	357
HpyCH4V	TGCA	2 cut(s)	122, 173
HpyF10VI	GCNNNNNNNGC	2 cut(s)	54, 119
HpyF3I	CTNAG	1 cut(s)	207
HpySE526I	ACGT	1 cut(s)	357
Hsp92II	CATG	5 cut(s)	146, 278, 310, 353, 410
HspAI	GCGC	1 cut(s)	292
Kzo9I	GATC	1 cut(s)	58
LmnI	GCTCC	2 cut(s)	89, 146
Lsp1109I	GCAGC	1 cut(s)	106
MabI	ACCWGGT	1 cut(s)	280
MaeI	CTAG	2 cut(s)	158, 324
MaeII	ACGT	1 cut(s)	357
MaeIII	GTNAC	1 cut(s)	284
MalI	GATC	1 cut(s)	60
MbiI	CCGCTC	1 cut(s)	54
MboI	GATC	1 cut(s)	58
MboII	GAAGA	1 cut(s)	203
MhlI	GDGCHC	3 cut(s)	151, 226, 263
MluCI	AATT	1 cut(s)	129
MlyI	GAGTC	2 cut(s)	199, 281
MnlI	CCTC	8 cut(s)	41, 224, 235, 247, 305, 330, 408, 421
MseI	TTAA	1 cut(s)	246
MspA1I	CMGCKG	1 cut(s)	219
MspI	CCGG	1 cut(s)	335
MspR9I	CCNGG	2 cut(s)	282, 379
MvaI	CCWGG	2 cut(s)	282, 379
MvnI	CGCG	1 cut(s)	292
MwoI	GCNNNNNNNGC	2 cut(s)	54, 119
NcoI	CCATGG	1 cut(s)	349
NdeII	GATC	1 cut(s)	58
NlaIII	CATG	5 cut(s)	146, 278, 310, 353, 410
NlaIV	GGNNCC	2 cut(s)	224, 260
NmeAIII	GCCGAG	1 cut(s)	130
NmuCI	GTSAC	1 cut(s)	284
PfoI	TCCNGGA	1 cut(s)	377
PkrI	GCNGC	4 cut(s)	56, 76, 107, 121
Ple19I	CGATCG	1 cut(s)	61
PleI	GAGTC	2 cut(s)	199, 281
PpsI	GAGTC	2 cut(s)	199, 281
Psp124BI	GAGCTC	1 cut(s)	151
Psp6I	CCWGG	2 cut(s)	280, 377
PspFI	CCCAGC	2 cut(s)	113, 219
PspGI	CCWGG	2 cut(s)	280, 377
PspN4I	GGNNCC	2 cut(s)	224, 260
PspOMI	GGGCCC	1 cut(s)	222
PspPI	GGNCC	4 cut(s)	16, 222, 223, 417
PstI	CTGCAG	1 cut(s)	124
PvuI	CGATCG	1 cut(s)	61
RsaI	GTAC	4 cut(s)	197, 214, 271, 279
RsaNI	GTAC	4 cut(s)	196, 213, 270, 278
SacI	GAGCTC	1 cut(s)	151
SaqAI	TTAA	1 cut(s)	246
SatI	GCNGC	4 cut(s)	55, 75, 106, 120
Sau3AI	GATC	1 cut(s)	58
Sau96I	GGNCC	4 cut(s)	16, 222, 223, 417
SchI	GAGTC	2 cut(s)	199, 281
ScrFI	CCNGG	2 cut(s)	282, 379
SduI	GDGCHC	3 cut(s)	151, 226, 263
SexAI	ACCWGGT	1 cut(s)	280
SfcI	CTRYAG	1 cut(s)	120
SinI	GGWCC	1 cut(s)	16
Sse9I	AATT	1 cut(s)	129
SsiI	CCGC	4 cut(s)	54, 75, 106, 217
SspMI	CTAG	2 cut(s)	158, 324
SstI	GAGCTC	1 cut(s)	151
StyD4I	CCNGG	2 cut(s)	280, 377
StyI	CCWWGG	5 cut(s)	69, 78, 100, 226, 349
TaiI	ACGT	1 cut(s)	360
TaqII	GACCGA	1 cut(s)	361
TasI	AATT	1 cut(s)	129
TauI	GCSGC	3 cut(s)	57, 77, 108
Tru1I	TTAA	1 cut(s)	246
Tru9I	TTAA	1 cut(s)	246
TseFI	GTSAC	1 cut(s)	284
TseI	GCWGC	1 cut(s)	119
Tsp45I	GTSAC	1 cut(s)	284
VpaK11BI	GGWCC	1 cut(s)	16
XspI	CTAG	2 cut(s)	158, 324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.