Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000777.1

Orthogroup ID

OG0004840

Physical Location & Seq

Genomic Coordinates Reverse (-)

71606 .. 72940

Gene Structure 1335 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000777.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

atggagaagtttatgcgtctctgggagaacaccaaacctgcagctggctcagcttttccaaagatggaaactcttgaggtgaagaattctggattgactaatctagagttgtctgcaatatccttccggaatctaagaattttagaaataaccttttgctggcgattgcaatatttgaccacttattctgtagctcgaagtcttgtgcaactcaaaactttgaaagttgacgaatgtaaaaatatgaaagaaatcttcacaagcgaaggaatggaagaagatgcaagtaaatgtgagattgagttcagccagttgcaaagtttagaacttagtgatttaataccggccgacctccaccatggcaacgtagctcgggtgtcggtttaccggatgcatgtcataggcggggctaaccatgctgcggggcccacctatgaggtcgttgattatgtttggcgagtgaaggtcacaatcttgggaactttaaaggtgaattggtgcccgttcaaattaaagatttcctctgataagctactagaagttgatggtgtccaaactgcatcatggtcacaaagtatgtctatgctggaacaggacaacagacgtttgcgggaagaattcagcctcccggagactccggttgttctcgcgctgcctgagactggtccttctagctcgttgactgccaagagaactgctgatcttcctgtggaggtgatagcccagcttaatgctctgcttggaattgatctggcaactcctgccgtggacaagaagagctcttctaaccacatagtgactgagctaactgcccaactggaggcaagaaggtctgagcttattgccggcagctctcaagctgaggcggaatgtcaagaagtcatgggtcgggaggcggaacttgctaacataagacaactaatcaaacggcttgaagctcgggccgctactcttgaggcgcgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

321

Amino Acids

35.81

Weight (kDa)

5.59

Isoelectric Point (pI)

49.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004840)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g03870 FvH4_2g07542
rosa_chinensis	RchiOBHm_Chr5g0078211
rosa_multiflora	Rmu_sc0000777.1_g000012 Rmu_sc0002148.1_g000027 Rmu_sc0002538.1_g000027 Rmu_sc0002662.1_g000006 Rmu_sc0004277.1_g000060 Rmu_sc0004295.1_g000013 Rmu_sc0004607.1_g000001 Rmu_sc0006862.1_g000010 Rmu_sc0007315.1_g000010 Rmu_sc0007681.1_g000016 Rmu_sc0010265.1_g000010 Rmu_sc0024414.1_g000002 Rmu_sc0025517.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043280 Rroxscaffold_2G00103140 Rroxscaffold_2G00121790 Rroxscaffold_2G00123140 Rroxscaffold_3G00248480 Rroxscaffold_3G00267950 Rroxscaffold_5G00342740 Rroxscaffold_5G00374520 Rroxscaffold_6G00389230
rosa_rugosa	Rorug02G0190000 Rorug06G0080500 Rorug07G0304100
rosa_samantha	Rh4DG074400 Rh4DG074500
rosa_wichuraiana	Rw0G002790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	46
AccB1I	GGYRCC	1 cut(s)	498
AccII	CGCG	2 cut(s)	650, 961
AccIII	TCCGGA	1 cut(s)	126
AciI	CCGC	6 cut(s)	405, 422, 610, 866, 896, 945
AcoI	YGGCCR	1 cut(s)	345
AcsI	RAATTY	3 cut(s)	85, 138, 617
AdeI	CACNNNGTG	1 cut(s)	796
AfiI	CCNNNNNNNGG	5 cut(s)	44, 159, 421, 662, 820
AgsI	TTSAA	3 cut(s)	223, 508, 935
Alw21I	GWGCWC	1 cut(s)	782
Alw26I	GTCTC	3 cut(s)	23, 626, 653
Ama87I	CYCGRG	2 cut(s)	372, 939
Aor13HI	TCCGGA	1 cut(s)	126
AoxI	GGCC	3 cut(s)	345, 425, 942
ApaI	GGGCCC	1 cut(s)	429
ApeKI	GCWGC	4 cut(s)	41, 419, 652, 849
ApoI	RAATTY	3 cut(s)	85, 138, 617
AspLEI	GCGC	3 cut(s)	652, 961, 963
AspS9I	GGNCC	4 cut(s)	425, 426, 665, 942
AsuC2I	CCSGG	1 cut(s)	629
AsuHPI	GGTGA	3 cut(s)	91, 502, 727
AvaI	CYCGRG	2 cut(s)	372, 939
AvaII	GGWCC	1 cut(s)	665
BaeGI	GKGCMC	2 cut(s)	429, 503
BanI	GGYRCC	1 cut(s)	498
BanII	GRGCYC	2 cut(s)	429, 782
Bbv12I	GWGCWC	1 cut(s)	782
BbvCI	CCTCAGC	1 cut(s)	861
BbvI	GCAGC	4 cut(s)	53, 406, 639, 861
BccI	CCATC	2 cut(s)	58, 539
BceAI	ACGGC	2 cut(s)	749, 944
BcnI	CCSGG	1 cut(s)	629
BcoDI	GTCTC	3 cut(s)	23, 626, 653
BfaI	CTAG	3 cut(s)	104, 536, 672
BfmI	CTRYAG	2 cut(s)	39, 189
BfuAI	ACCTGC	1 cut(s)	46
BisI	GCNGC	5 cut(s)	42, 420, 653, 850, 945
BlpI	GCTNAGC	1 cut(s)	49
BlsI	GCNGC	5 cut(s)	43, 421, 654, 851, 946
Bme1390I	CCNGG	1 cut(s)	629
Bme18I	GGWCC	1 cut(s)	665
BmeT110I	CYCGRG	2 cut(s)	372, 939
BmgT120I	GGNCC	4 cut(s)	425, 426, 665, 942
BmiI	GGNNCC	3 cut(s)	426, 427, 500
BmrFI	CCNGG	1 cut(s)	629
BmsI	GCATC	3 cut(s)	271, 381, 569
BpmI	CTGGAG	1 cut(s)	839
Bpu10I	CCTNAGC	1 cut(s)	861
Bpu1102I	GCTNAGC	1 cut(s)	49
BpuEI	CTTGAG	2 cut(s)	95, 840
BpuMI	CCSGG	1 cut(s)	629
BsaJI	CCNNGG	2 cut(s)	358, 765
BsaWI	WCCGGW	3 cut(s)	126, 387, 637
Bsc4I	CCNNNNNNNGG	5 cut(s)	44, 159, 421, 662, 820
Bse118I	RCCGGY	2 cut(s)	343, 845
Bse1I	ACTGG	3 cut(s)	310, 667, 822
BseAI	TCCGGA	1 cut(s)	126
BseDI	CCNNGG	2 cut(s)	358, 765
BseGI	GGATG	1 cut(s)	396
BseLI	CCNNNNNNNGG	5 cut(s)	44, 159, 421, 662, 820
BseMII	CTCAG	5 cut(s)	63, 648, 792, 825, 852
BseNI	ACTGG	3 cut(s)	310, 667, 822
BsePI	GCGCGC	1 cut(s)	959
BseSI	GKGCMC	2 cut(s)	429, 503
BseX3I	CGGCCG	1 cut(s)	345
BseXI	GCAGC	4 cut(s)	53, 406, 639, 861
BseYI	CCCAGC	1 cut(s)	723
Bsh1236I	CGCG	2 cut(s)	650, 961
Bsh1285I	CGRYCG	1 cut(s)	348
BshFI	GGCC	3 cut(s)	347, 427, 944
BshNI	GGYRCC	1 cut(s)	498
BsiEI	CGRYCG	1 cut(s)	348
BsiHKAI	GWGCWC	1 cut(s)	782
BsiHKCI	CYCGRG	2 cut(s)	372, 939
BsiSI	CCGG	6 cut(s)	127, 344, 388, 629, 638, 846
BslI	CCNNNNNNNGG	5 cut(s)	44, 159, 421, 662, 820
BsmAI	GTCTC	3 cut(s)	23, 626, 653
BsmBI	CGTCTC	1 cut(s)	23
BsnI	GGCC	3 cut(s)	347, 427, 944
BsoBI	CYCGRG	2 cut(s)	372, 939
Bsp120I	GGGCCC	1 cut(s)	425
Bsp1286I	GDGCHC	3 cut(s)	429, 503, 782
Bsp13I	TCCGGA	1 cut(s)	126
Bsp143I	GATC	2 cut(s)	700, 748
Bsp1720I	GCTNAGC	1 cut(s)	49
Bsp19I	CCATGG	1 cut(s)	358
BspACI	CCGC	6 cut(s)	405, 422, 610, 866, 896, 945
BspANI	GGCC	3 cut(s)	347, 427, 944
BspCNI	CTCAG	5 cut(s)	62, 649, 793, 826, 853
BspEI	TCCGGA	1 cut(s)	126
BspFNI	CGCG	2 cut(s)	650, 961
BspLI	GGNNCC	3 cut(s)	426, 427, 500
BspMAI	CTGCAG	1 cut(s)	43
BspMI	ACCTGC	1 cut(s)	46
BspQI	GCTCTTC	2 cut(s)	770, 787
BspT107I	GGYRCC	1 cut(s)	498
BsrFI	RCCGGY	2 cut(s)	343, 845
BsrI	ACTGG	3 cut(s)	310, 667, 822
BssAI	RCCGGY	2 cut(s)	343, 845
BssECI	CCNNGG	2 cut(s)	358, 765
BssHII	GCGCGC	1 cut(s)	959
BssMI	GATC	2 cut(s)	700, 748
BssT1I	CCWWGG	1 cut(s)	358
Bst6I	CTCTTC	2 cut(s)	770, 787
BstAPI	GCANNNNNTGC	1 cut(s)	761
BstC8I	GCNNGC	4 cut(s)	46, 161, 847, 961
BstDEI	CTNAG	7 cut(s)	49, 134, 329, 657, 801, 834, 861
BstDSI	CCRYGG	2 cut(s)	358, 765
BstF5I	GGATG	1 cut(s)	396
BstFNI	CGCG	2 cut(s)	650, 961
BstHHI	GCGC	3 cut(s)	652, 961, 963
BstKTI	GATC	2 cut(s)	703, 751
BstMAI	GTCTC	3 cut(s)	23, 626, 653
BstMBI	GATC	2 cut(s)	700, 748
BstMCI	CGRYCG	1 cut(s)	348
BstMWI	GCNNNNNNNGC	5 cut(s)	50, 416, 761, 902, 944
BstNSI	RCATGY	1 cut(s)	398
BstSCI	CCNGG	1 cut(s)	627
BstSFI	CTRYAG	2 cut(s)	39, 189
BstSLI	GKGCMC	2 cut(s)	429, 503
BstUI	CGCG	2 cut(s)	650, 961
BstV1I	GCAGC	4 cut(s)	53, 406, 639, 861
BstZI	CGGCCG	1 cut(s)	345
BsuRI	GGCC	3 cut(s)	347, 427, 944
BtgI	CCRYGG	2 cut(s)	358, 765
BtsCI	GGATG	1 cut(s)	396
BveI	ACCTGC	1 cut(s)	46
Cac8I	GCNNGC	4 cut(s)	46, 161, 847, 961
CfoI	GCGC	3 cut(s)	652, 961, 963
Cfr10I	RCCGGY	2 cut(s)	343, 845
Cfr13I	GGNCC	4 cut(s)	425, 426, 665, 942
CseI	GACGC	1 cut(s)	5
CviAII	CATG	5 cut(s)	359, 395, 416, 564, 883
DdeI	CTNAG	7 cut(s)	49, 134, 329, 657, 801, 834, 861
DpnI	GATC	2 cut(s)	702, 750
DpnII	GATC	2 cut(s)	700, 748
DraI	TTTAAA	1 cut(s)	486
DraIII	CACNNNGTG	1 cut(s)	796
EaeI	YGGCCR	1 cut(s)	345
EagI	CGGCCG	1 cut(s)	345
Eam1104I	CTCTTC	2 cut(s)	770, 787
EarI	CTCTTC	2 cut(s)	770, 787
EciI	GGCGGA	2 cut(s)	881, 911
Ecl136II	GAGCTC	1 cut(s)	780
EclXI	CGGCCG	1 cut(s)	345
Eco130I	CCWWGG	1 cut(s)	358
Eco24I	GRGCYC	2 cut(s)	429, 782
Eco47I	GGWCC	1 cut(s)	665
Eco52I	CGGCCG	1 cut(s)	345
Eco53kI	GAGCTC	1 cut(s)	780
Eco88I	CYCGRG	2 cut(s)	372, 939
EcoICRI	GAGCTC	1 cut(s)	780
EcoO109I	RGGNCCY	1 cut(s)	425
EcoRI	GAATTC	2 cut(s)	85, 617
EcoT14I	CCWWGG	1 cut(s)	358
EcoT22I	ATGCAT	1 cut(s)	396
EcoT38I	GRGCYC	2 cut(s)	429, 782
ErhI	CCWWGG	1 cut(s)	358
Esp3I	CGTCTC	1 cut(s)	23
FaeI	CATG	5 cut(s)	362, 398, 419, 567, 886
FatI	CATG	5 cut(s)	358, 394, 415, 563, 882
FauI	CCCGC	3 cut(s)	398, 415, 603
Fnu4HI	GCNGC	5 cut(s)	42, 420, 653, 850, 945
FokI	GGATG	1 cut(s)	403
FriOI	GRGCYC	2 cut(s)	429, 782
Fsp4HI	GCNGC	5 cut(s)	42, 420, 653, 850, 945
FspBI	CTAG	3 cut(s)	104, 536, 672
GlaI	GCGC	3 cut(s)	651, 960, 962
GluI	GCNGC	5 cut(s)	42, 420, 653, 850, 945
GsaI	CCCAGC	1 cut(s)	727
GsuI	CTGGAG	1 cut(s)	839
HaeIII	GGCC	3 cut(s)	347, 427, 944
HapII	CCGG	6 cut(s)	127, 344, 388, 629, 638, 846
HgaI	GACGC	1 cut(s)	5
HhaI	GCGC	3 cut(s)	652, 961, 963
Hin1II	CATG	5 cut(s)	362, 398, 419, 567, 886
Hin6I	GCGC	3 cut(s)	650, 959, 961
HinP1I	GCGC	3 cut(s)	650, 959, 961
HincII	GTYRAC	2 cut(s)	229, 681
HindII	GTYRAC	2 cut(s)	229, 681
HinfI	GANTC	2 cut(s)	130, 634
HpaII	CCGG	6 cut(s)	127, 344, 388, 629, 638, 846
HphI	GGTGA	3 cut(s)	91, 502, 727
Hpy166II	GTNNAC	4 cut(s)	229, 385, 681, 769
Hpy188I	TCNGA	2 cut(s)	526, 835
Hpy188III	TCNNGA	7 cut(s)	74, 90, 104, 127, 875, 890, 953
Hpy8I	GTNNAC	4 cut(s)	229, 385, 681, 769
HpyAV	CCTTC	5 cut(s)	133, 260, 457, 678, 822
HpyCH4IV	ACGT	2 cut(s)	366, 604
HpyCH4V	TGCA	8 cut(s)	41, 116, 169, 208, 284, 316, 394, 560
HpyF10VI	GCNNNNNNNGC	5 cut(s)	50, 416, 761, 902, 944
HpyF3I	CTNAG	7 cut(s)	49, 134, 329, 657, 801, 834, 861
HpySE526I	ACGT	2 cut(s)	366, 604
Hsp92II	CATG	5 cut(s)	362, 398, 419, 567, 886
HspAI	GCGC	3 cut(s)	650, 959, 961
Kpn2I	TCCGGA	1 cut(s)	126
KroI	GCCGGC	1 cut(s)	845
KroNI	GCCGGC	1 cut(s)	847
Kzo9I	GATC	2 cut(s)	700, 748
LguI	GCTCTTC	2 cut(s)	770, 787
Lsp1109I	GCAGC	4 cut(s)	53, 406, 639, 861
LweI	GCATC	3 cut(s)	271, 381, 569
MaeI	CTAG	3 cut(s)	104, 536, 672
MaeII	ACGT	2 cut(s)	366, 604
MaeIII	GTNAC	3 cut(s)	466, 567, 796
MalI	GATC	2 cut(s)	702, 750
MboI	GATC	2 cut(s)	700, 748
MboII	GAAGA	8 cut(s)	94, 247, 287, 290, 626, 695, 774, 787
MhlI	GDGCHC	3 cut(s)	429, 503, 782
MluCI	AATT	6 cut(s)	85, 138, 493, 509, 617, 744
MlyI	GAGTC	1 cut(s)	628
Mph1103I	ATGCAT	1 cut(s)	396
MroI	TCCGGA	1 cut(s)	126
MroNI	GCCGGC	1 cut(s)	845
MseI	TTAA	4 cut(s)	338, 485, 512, 729
MspA1I	CMGCKG	1 cut(s)	44
MspI	CCGG	6 cut(s)	127, 344, 388, 629, 638, 846
MspR9I	CCNGG	1 cut(s)	629
MvnI	CGCG	2 cut(s)	650, 961
MwoI	GCNNNNNNNGC	5 cut(s)	50, 416, 761, 902, 944
NaeI	GCCGGC	1 cut(s)	847
NciI	CCSGG	1 cut(s)	629
NcoI	CCATGG	1 cut(s)	358
NdeII	GATC	2 cut(s)	700, 748
NgoMIV	GCCGGC	1 cut(s)	845
NlaIII	CATG	5 cut(s)	362, 398, 419, 567, 886
NlaIV	GGNNCC	3 cut(s)	426, 427, 500
NmuCI	GTSAC	3 cut(s)	466, 567, 796
NsiI	ATGCAT	1 cut(s)	396
NspI	RCATGY	1 cut(s)	398
PauI	GCGCGC	1 cut(s)	959
PciSI	GCTCTTC	2 cut(s)	770, 787
PdiI	GCCGGC	1 cut(s)	847
PfeI	GAWTC	1 cut(s)	130
PfoI	TCCNGGA	1 cut(s)	627
PkrI	GCNGC	5 cut(s)	43, 421, 654, 851, 946
PleI	GAGTC	1 cut(s)	628
PpsI	GAGTC	1 cut(s)	628
Psp124BI	GAGCTC	1 cut(s)	782
PspFI	CCCAGC	1 cut(s)	723
PspN4I	GGNNCC	3 cut(s)	426, 427, 500
PspOMI	GGGCCC	1 cut(s)	425
PspPI	GGNCC	4 cut(s)	425, 426, 665, 942
PstI	CTGCAG	1 cut(s)	43
PteI	GCGCGC	1 cut(s)	959
PvuII	CAGCTG	1 cut(s)	44
SacI	GAGCTC	1 cut(s)	782
SapI	GCTCTTC	2 cut(s)	770, 787
SaqAI	TTAA	4 cut(s)	338, 485, 512, 729
SatI	GCNGC	5 cut(s)	42, 420, 653, 850, 945
Sau3AI	GATC	2 cut(s)	700, 748
Sau96I	GGNCC	4 cut(s)	425, 426, 665, 942
SchI	GAGTC	1 cut(s)	628
ScrFI	CCNGG	1 cut(s)	629
SduI	GDGCHC	3 cut(s)	429, 503, 782
SfaNI	GCATC	3 cut(s)	271, 381, 569
SfcI	CTRYAG	2 cut(s)	39, 189
SinI	GGWCC	1 cut(s)	665
SmlI	CTYRAG	3 cut(s)	74, 855, 953
SmoI	CTYRAG	3 cut(s)	74, 855, 953
Sse9I	AATT	6 cut(s)	85, 138, 493, 509, 617, 744
SsiI	CCGC	6 cut(s)	405, 422, 610, 866, 896, 945
SspI	AATATT	1 cut(s)	173
SspMI	CTAG	3 cut(s)	104, 536, 672
SstI	GAGCTC	1 cut(s)	782
StyD4I	CCNGG	1 cut(s)	627
StyI	CCWWGG	1 cut(s)	358
TaiI	ACGT	2 cut(s)	369, 607
TaqI	TCGA	1 cut(s)	196
TasI	AATT	6 cut(s)	85, 138, 493, 509, 617, 744
TauI	GCSGC	1 cut(s)	947
TfiI	GAWTC	1 cut(s)	130
Tru1I	TTAA	4 cut(s)	338, 485, 512, 729
Tru9I	TTAA	4 cut(s)	338, 485, 512, 729
TseFI	GTSAC	3 cut(s)	466, 567, 796
TseI	GCWGC	4 cut(s)	41, 419, 652, 849
Tsp45I	GTSAC	3 cut(s)	466, 567, 796
TspDTI	ATGAA	1 cut(s)	260
VpaK11BI	GGWCC	1 cut(s)	665
XapI	RAATTY	3 cut(s)	85, 138, 617
XbaI	TCTAGA	1 cut(s)	103
XceI	RCATGY	1 cut(s)	398
XspI	CTAG	3 cut(s)	104, 536, 672
Zsp2I	ATGCAT	1 cut(s)	396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.