Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0002338

Physical Location & Seq

Genomic Coordinates Forward (+)

8915701 .. 8920114

Gene Structure 4414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g10090.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGGATTGGGCGCGTTCATGGAAGGCGACACTCTTCTCACTTCTTGGAGACATTCCATCTCATCTTCGAAAACTGGTTGCTTCCATTTCCATTGATGGAACTTCTGCGACTACTCTCATTGTTGACAGCAACACAGGAGAACCATTCTGGAGACCTTTCCTTTACAATGAGAGTTGCCCTGATGCTTTACCAACAGTTAAATCTATTGCTCCTCCAAACCATACAGTCTGCTCTGGTTCCTCTACTCTGTGCAAGCTTGTCTCCTGGTGGGAGAATGATTCTCCAAATAAAAAATCGGCACTATTGTTGCATCAAGCGGATTGGCTTTTATGGCTTCTTCATGGAAAGCTCGGAGTGTCTGATTATAATAATGCTCTGAAGGTTGGTTATGATCCGGAGCTTGAATCCTATCCACCCTGGCTACTCTCTCAGCCCTATTCAAAACTGTTACCTTCTGTTAGAGCTCCAGGAACTTCAATCGGTCATTTGAAAGAGGACATAAGATCAGAGTTTGGTTTTCCAAGTGATTGTGCTGTATGCACAGGAACGACTGATAGTATAGCAGCTTTTTTAGCAGCTCGTGCAACACAACCTGGGAAAGCTGTAACTTCTTTGGGTTCAACACTTGCCATAAAACTGCTGAGCACAACTAGGATTGAGGATGCACGATTTGGGGTGTACAGTCATCGCCTTGACGATAAGTGGCTTGTTGGAGGTGCTTCAAATACTGGTGGAGCAGTTCTCAGACAAATTTTCACTGATGAGCAACTGGAGAAATTGAGTGTACAGATTGATCCCATGGAAGCTTCTCCTCTAGACTACTACCCACTGCAATCAGTTGGTGAGAGATTTCCAGTGGCAGATCCGAATAAGGCTCCAAGATTACACCCACGTCCAGAAAGTGAGGCGGAGTTTTTGCATGGGATTCTTGAATCTATTGCGCGTATAGAGGCAAAAGCTTACAACTTGCTCAAGGAACTAGGTGCAACCCAAGTTGATGAAGTCTTCACAGCTGGAGGTGGTGCCAGAAATGAGAAATGGACAAAGATAAGAGAGAGAGTACTTGGTTTGCCTGTAAGTTCAGCAATTCAAACCGAGGCTGCATATGGAGCTGCTTTGTTGGCTTTGAGGGGAGTTCATGAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0006793 GO:0006796 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019150 GO:0019200 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044262 GO:0044424 GO:0044444 GO:0044464 GO:0046835 GO:0071704 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FGGY_C FGGY_N

Protein Analysis

383

Amino Acids

41.69

Weight (kDa)

6.02

Isoelectric Point (pI)

36.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FGGY_N	PF00370	16 - 245	7e-09	FGGY family of carbohydrate kinases, N-terminal domain
FGGY_C	PF02782	282 - 431	2.8e-09	FGGY family of carbohydrate kinases, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002338)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21370 AT2G21370 AT2G21370 AT2G21370
fragaria_vesca	FvH4_2g10090 FvH4_2g10090 FvH4_2g10090 FvH4_2g10090
malus_domestica	MD10G1065800.v1.1
prunus_persica	Prupe.8G087700_v2.0.a1 Prupe.8G087700_v2.0.a1
pyrus_communis	pycom10g05120
rosa_chinensis	RchiOBHm_Chr3g0496591 RchiOBHm_Chr4g0423361 RchiOBHm_Chr6g0267041
rosa_laevigata	RLG00000003987 RLG00000014047 RLG00000018837 RLG00000028975
rosa_multiflora	Rmu_sc0013804.1_g000007 Rmu_sc0030781.1_g000001 Rmu_sc0033156.1_g000001 Rmu_sc0033555.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147730 Rroxscaffold_2G00147740 Rroxscaffold_7G00201210
rosa_rugosa	Rorug01G0215500 Rorug02G0305900
rosa_samantha	Rh2BG290800 Rh2BG290900 Rh2DG285900 Rh3AG330100 Rh3CG362900 Rh3DG366000 Rh5CG284800 Rh6CG099100 Rh6CG146300 Rh6CG146400 Rh7BG254600 Rh7BG468800
rosa_wichuraiana	Rw3G028900 Rw6G013010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	366
AccB1I	GGYRCC	1 cut(s)	1022
AccII	CGCG	2 cut(s)	13, 943
AccIII	TCCGGA	1 cut(s)	394
AciI	CCGC	2 cut(s)	317, 908
AclWI	GGATC	3 cut(s)	386, 788, 857
AcsI	RAATTY	1 cut(s)	750
AcuI	CTGAAG	1 cut(s)	398
AfaI	GTAC	3 cut(s)	680, 786, 1062
AgsI	TTSAA	8 cut(s)	404, 441, 477, 490, 621, 723, 932, 1091
AjiI	CACGTC	1 cut(s)	893
AjnI	CCWGG	4 cut(s)	263, 416, 466, 592
Alw21I	GWGCWC	2 cut(s)	466, 647
Alw26I	GTCTC	3 cut(s)	42, 145, 265
AlwI	GGATC	3 cut(s)	386, 788, 857
Aor13HI	TCCGGA	1 cut(s)	394
ApeKI	GCWGC	4 cut(s)	563, 575, 1100, 1112
ApoI	RAATTY	1 cut(s)	750
AspLEI	GCGC	2 cut(s)	13, 943
AsuHPI	GGTGA	1 cut(s)	854
AsuII	TTCGAA	1 cut(s)	67
BanI	GGYRCC	1 cut(s)	1022
BanII	GRGCYC	1 cut(s)	466
BauI	CACGAG	1 cut(s)	579
BbsI	GAAGAC	1 cut(s)	997
Bbv12I	GWGCWC	2 cut(s)	466, 647
BbvI	GCAGC	4 cut(s)	575, 587, 1087, 1099
BccI	CCATC	2 cut(s)	64, 89
BciT130I	CCWGG	4 cut(s)	265, 418, 468, 594
BcoDI	GTCTC	3 cut(s)	42, 145, 265
BfaI	CTAG	3 cut(s)	651, 815, 980
BisI	GCNGC	4 cut(s)	564, 576, 1101, 1113
BlpI	GCTNAGC	1 cut(s)	641
BlsI	GCNGC	4 cut(s)	565, 577, 1102, 1114
BmcAI	AGTACT	1 cut(s)	1062
Bme1390I	CCNGG	4 cut(s)	265, 418, 468, 594
BmgBI	CACGTC	1 cut(s)	893
BmiI	GGNNCC	3 cut(s)	238, 876, 1024
BmrFI	CCNGG	4 cut(s)	265, 418, 468, 594
BmsI	GCATC	3 cut(s)	172, 319, 652
BpiI	GAAGAC	1 cut(s)	997
BplI	GAGNNNNNCTC	2 cut(s)	726, 758
BpmI	CTGGAG	4 cut(s)	169, 450, 791, 1035
Bpu1102I	GCTNAGC	1 cut(s)	641
Bpu14I	TTCGAA	1 cut(s)	67
BpuEI	CTTGAG	1 cut(s)	956
BsaI	GGTCTC	1 cut(s)	145
BsaJI	CCNNGG	4 cut(s)	416, 593, 798, 1095
BsaWI	WCCGGW	1 cut(s)	394
Bse1I	ACTGG	4 cut(s)	78, 733, 774, 854
BseAI	TCCGGA	1 cut(s)	394
BseBI	CCWGG	4 cut(s)	265, 418, 468, 594
BseDI	CCNNGG	4 cut(s)	416, 593, 798, 1095
BseGI	GGATG	1 cut(s)	667
BseMII	CTCAG	3 cut(s)	443, 632, 757
BseNI	ACTGG	4 cut(s)	78, 733, 774, 854
BseRI	GAGGAG	2 cut(s)	201, 801
BseXI	GCAGC	4 cut(s)	575, 587, 1087, 1099
Bsh1236I	CGCG	2 cut(s)	13, 943
BshNI	GGYRCC	1 cut(s)	1022
BsiHKAI	GWGCWC	2 cut(s)	466, 647
BsiSI	CCGG	1 cut(s)	395
BsmAI	GTCTC	3 cut(s)	42, 145, 265
Bso31I	GGTCTC	1 cut(s)	145
Bsp119I	TTCGAA	1 cut(s)	67
Bsp1286I	GDGCHC	2 cut(s)	466, 647
Bsp13I	TCCGGA	1 cut(s)	394
Bsp1407I	TGTACA	2 cut(s)	678, 784
Bsp143I	GATC	4 cut(s)	391, 503, 793, 862
Bsp1720I	GCTNAGC	1 cut(s)	641
Bsp19I	CCATGG	1 cut(s)	798
BspACI	CCGC	2 cut(s)	317, 908
BspCNI	CTCAG	3 cut(s)	442, 633, 756
BspEI	TCCGGA	1 cut(s)	394
BspFNI	CGCG	2 cut(s)	13, 943
BspHI	TCATGA	1 cut(s)	1138
BspLI	GGNNCC	3 cut(s)	238, 876, 1024
BspPI	GGATC	3 cut(s)	386, 788, 857
BspT104I	TTCGAA	1 cut(s)	67
BspT107I	GGYRCC	1 cut(s)	1022
BspTNI	GGTCTC	1 cut(s)	145
BsrGI	TGTACA	2 cut(s)	678, 784
BsrI	ACTGG	4 cut(s)	78, 733, 774, 854
BssECI	CCNNGG	4 cut(s)	416, 593, 798, 1095
BssMI	GATC	4 cut(s)	391, 503, 793, 862
BssSI	CACGAG	1 cut(s)	579
BssT1I	CCWWGG	1 cut(s)	798
Bst2BI	CACGAG	1 cut(s)	579
Bst2UI	CCWGG	4 cut(s)	265, 418, 468, 594
Bst4CI	ACNGT	4 cut(s)	196, 226, 447, 683
Bst6I	CTCTTC	1 cut(s)	38
BstAPI	GCANNNNNTGC	1 cut(s)	581
BstAUI	TGTACA	2 cut(s)	678, 784
BstBI	TTCGAA	1 cut(s)	67
BstC8I	GCNNGC	1 cut(s)	254
BstDEI	CTNAG	3 cut(s)	429, 641, 743
BstDSI	CCRYGG	1 cut(s)	798
BstF5I	GGATG	1 cut(s)	667
BstFNI	CGCG	2 cut(s)	13, 943
BstHHI	GCGC	2 cut(s)	13, 943
BstKTI	GATC	4 cut(s)	394, 506, 796, 865
BstMAI	GTCTC	3 cut(s)	42, 145, 265
BstMBI	GATC	4 cut(s)	391, 503, 793, 862
BstMWI	GCNNNNNNNGC	5 cut(s)	331, 572, 581, 1109, 1121
BstNI	CCWGG	4 cut(s)	265, 418, 468, 594
BstSCI	CCNGG	4 cut(s)	263, 416, 466, 592
BstUI	CGCG	2 cut(s)	13, 943
BstV1I	GCAGC	4 cut(s)	575, 587, 1087, 1099
BstV2I	GAAGAC	1 cut(s)	997
BstX2I	RGATCY	1 cut(s)	862
BstYI	RGATCY	1 cut(s)	862
BtgI	CCRYGG	1 cut(s)	798
BtgZI	GCGATG	1 cut(s)	671
BtrI	CACGTC	1 cut(s)	893
BtsCI	GGATG	1 cut(s)	667
BtsI	GCAGTG	1 cut(s)	827
BtsIMutI	CAGTG	3 cut(s)	756, 827, 861
Cac8I	GCNNGC	1 cut(s)	254
CciI	TCATGA	1 cut(s)	1138
CfoI	GCGC	2 cut(s)	13, 943
Csp6I	GTAC	3 cut(s)	679, 785, 1061
CviAII	CATG	5 cut(s)	18, 341, 799, 920, 1139
CviQI	GTAC	3 cut(s)	679, 785, 1061
DdeI	CTNAG	3 cut(s)	429, 641, 743
DpnI	GATC	4 cut(s)	393, 505, 795, 864
DpnII	GATC	4 cut(s)	391, 503, 793, 862
Eam1104I	CTCTTC	1 cut(s)	38
EarI	CTCTTC	1 cut(s)	38
EciI	GGCGGA	1 cut(s)	923
Ecl136II	GAGCTC	1 cut(s)	464
Eco130I	CCWWGG	1 cut(s)	798
Eco24I	GRGCYC	1 cut(s)	466
Eco31I	GGTCTC	1 cut(s)	145
Eco53kI	GAGCTC	1 cut(s)	464
Eco57I	CTGAAG	1 cut(s)	398
EcoICRI	GAGCTC	1 cut(s)	464
EcoRII	CCWGG	4 cut(s)	263, 416, 466, 592
EcoT14I	CCWWGG	1 cut(s)	798
EcoT38I	GRGCYC	1 cut(s)	466
ErhI	CCWWGG	1 cut(s)	798
FaeI	CATG	5 cut(s)	21, 344, 802, 923, 1142
FatI	CATG	5 cut(s)	17, 340, 798, 919, 1138
FauNDI	CATATG	1 cut(s)	1105
Fnu4HI	GCNGC	4 cut(s)	564, 576, 1101, 1113
FokI	GGATG	1 cut(s)	674
FriOI	GRGCYC	1 cut(s)	466
Fsp4HI	GCNGC	4 cut(s)	564, 576, 1101, 1113
FspBI	CTAG	3 cut(s)	651, 815, 980
GlaI	GCGC	2 cut(s)	12, 942
GluI	GCNGC	4 cut(s)	564, 576, 1101, 1113
GsuI	CTGGAG	4 cut(s)	169, 450, 791, 1035
HapII	CCGG	1 cut(s)	395
HhaI	GCGC	2 cut(s)	13, 943
Hin1II	CATG	5 cut(s)	21, 344, 802, 923, 1142
Hin6I	GCGC	2 cut(s)	11, 941
HinP1I	GCGC	2 cut(s)	11, 941
HincII	GTYRAC	1 cut(s)	124
HindII	GTYRAC	1 cut(s)	124
HindIII	AAGCTT	3 cut(s)	254, 804, 957
HinfI	GANTC	4 cut(s)	278, 404, 925, 932
HpaII	CCGG	1 cut(s)	395
HphI	GGTGA	1 cut(s)	854
Hpy166II	GTNNAC	3 cut(s)	124, 679, 785
Hpy188I	TCNGA	6 cut(s)	353, 361, 378, 508, 746, 867
Hpy188III	TCNNGA	6 cut(s)	148, 395, 815, 896, 929, 1139
Hpy8I	GTNNAC	3 cut(s)	124, 679, 785
HpyAV	CCTTC	3 cut(s)	16, 373, 462
HpyCH4III	ACNGT	4 cut(s)	196, 226, 447, 683
HpyCH4IV	ACGT	1 cut(s)	892
HpyCH4V	TGCA	9 cut(s)	252, 310, 540, 584, 665, 832, 919, 986, 1103
HpyF10VI	GCNNNNNNNGC	5 cut(s)	331, 572, 581, 1109, 1121
HpyF3I	CTNAG	3 cut(s)	429, 641, 743
HpySE526I	ACGT	1 cut(s)	892
Hsp92II	CATG	5 cut(s)	21, 344, 802, 923, 1142
HspAI	GCGC	2 cut(s)	11, 941
Kpn2I	TCCGGA	1 cut(s)	394
Kzo9I	GATC	4 cut(s)	391, 503, 793, 862
LmnI	GCTCC	6 cut(s)	214, 397, 469, 734, 880, 1109
Lsp1109I	GCAGC	4 cut(s)	575, 587, 1087, 1099
LweI	GCATC	3 cut(s)	172, 319, 652
MaeI	CTAG	3 cut(s)	651, 815, 980
MaeII	ACGT	1 cut(s)	892
MaeIII	GTNAC	2 cut(s)	447, 604
MalI	GATC	4 cut(s)	393, 505, 795, 864
MboI	GATC	4 cut(s)	391, 503, 793, 862
MboII	GAAGA	4 cut(s)	25, 56, 329, 997
MflI	RGATCY	1 cut(s)	862
MhlI	GDGCHC	2 cut(s)	466, 647
MluCI	AATT	3 cut(s)	750, 776, 1086
MmeI	TCCRAC	1 cut(s)	691
MroI	TCCGGA	1 cut(s)	394
MseI	TTAA	1 cut(s)	198
MspA1I	CMGCKG	1 cut(s)	1013
MspI	CCGG	1 cut(s)	395
MspR9I	CCNGG	4 cut(s)	265, 418, 468, 594
MvaI	CCWGG	4 cut(s)	265, 418, 468, 594
MvnI	CGCG	2 cut(s)	13, 943
MwoI	GCNNNNNNNGC	5 cut(s)	331, 572, 581, 1109, 1121
NcoI	CCATGG	1 cut(s)	798
NdeI	CATATG	1 cut(s)	1105
NdeII	GATC	4 cut(s)	391, 503, 793, 862
NlaIII	CATG	5 cut(s)	21, 344, 802, 923, 1142
NlaIV	GGNNCC	3 cut(s)	238, 876, 1024
NspV	TTCGAA	1 cut(s)	67
PagI	TCATGA	1 cut(s)	1138
PfeI	GAWTC	4 cut(s)	278, 404, 925, 932
PfoI	TCCNGGA	1 cut(s)	466
PkrI	GCNGC	4 cut(s)	565, 577, 1102, 1114
PsiI	TTATAA	1 cut(s)	366
Psp124BI	GAGCTC	1 cut(s)	466
Psp6I	CCWGG	4 cut(s)	263, 416, 466, 592
PspGI	CCWGG	4 cut(s)	263, 416, 466, 592
PspN4I	GGNNCC	3 cut(s)	238, 876, 1024
PsuI	RGATCY	1 cut(s)	862
PvuII	CAGCTG	1 cut(s)	1013
RsaI	GTAC	3 cut(s)	680, 786, 1062
RsaNI	GTAC	3 cut(s)	679, 785, 1061
SacI	GAGCTC	1 cut(s)	466
SaqAI	TTAA	1 cut(s)	198
SatI	GCNGC	4 cut(s)	564, 576, 1101, 1113
Sau3AI	GATC	4 cut(s)	391, 503, 793, 862
ScaI	AGTACT	1 cut(s)	1062
ScrFI	CCNGG	4 cut(s)	265, 418, 468, 594
SduI	GDGCHC	2 cut(s)	466, 647
SfaNI	GCATC	3 cut(s)	172, 319, 652
SfuI	TTCGAA	1 cut(s)	67
SmlI	CTYRAG	1 cut(s)	971
SmoI	CTYRAG	1 cut(s)	971
Sse9I	AATT	3 cut(s)	750, 776, 1086
SsiI	CCGC	2 cut(s)	317, 908
SspMI	CTAG	3 cut(s)	651, 815, 980
SstI	GAGCTC	1 cut(s)	466
StyD4I	CCNGG	4 cut(s)	263, 416, 466, 592
StyI	CCWWGG	1 cut(s)	798
TaaI	ACNGT	4 cut(s)	196, 226, 447, 683
TaiI	ACGT	1 cut(s)	895
TaqI	TCGA	1 cut(s)	67
TaqII	GACCGA	1 cut(s)	470
TasI	AATT	3 cut(s)	750, 776, 1086
TatI	WGTACW	3 cut(s)	678, 784, 1060
TfiI	GAWTC	4 cut(s)	278, 404, 925, 932
Tru1I	TTAA	1 cut(s)	198
Tru9I	TTAA	1 cut(s)	198
TscAI	CASTG	3 cut(s)	763, 834, 861
TseI	GCWGC	4 cut(s)	563, 575, 1100, 1112
TspDTI	ATGAA	4 cut(s)	6, 329, 1014, 1127
TspRI	CASTG	3 cut(s)	763, 834, 861
XapI	RAATTY	1 cut(s)	750
XbaI	TCTAGA	1 cut(s)	814
XspI	CTAG	3 cut(s)	651, 815, 980
ZrmI	AGTACT	1 cut(s)	1062

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.