Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013804.1

Orthogroup ID

OG0002338

Physical Location & Seq

Genomic Coordinates Reverse (-)

18973 .. 19923

Gene Structure 951 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013804.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

atgcccactattgattatttagcaaatagtctaaaactttgtatccaggtaacttctttgggttcaacacttgccataaaactgctgagcactactaggattgaggatgcacggtttggggtgtatagtcatcgccttgatgataagtggcttgttggaggtgcttcaaatactggtggagcagttcttagacaaattttcactgacgagcaactggagaaattgagtgaacagattgatcccatggaagcttctcctctagactactacccactgcaatcagttggtgagagatttccagtggcagatccgaatatggctccaagattacacccacgtccagaaagtgaggtggagtttttgcatgggattcttgaatccattgcgcgtatagaggcaaaagcttacaacttactcaaggaactaggcgcaacccaagttgatgaagtgttcacagccggaggtggtgcgagaaatgagaaatggacaaagattagagagagagtacttggtttgcctgtaagttctgcaattcaaaccgaggctgcatatggagctgctttgttggctttgaggggaacccatgggaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0006793 GO:0006796 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019150 GO:0019200 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044262 GO:0044424 GO:0044444 GO:0044464 GO:0046835 GO:0071704 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FGGY_C FGGY_N

Protein Analysis

197

Amino Acids

21.56

Weight (kDa)

5.62

Isoelectric Point (pI)

31.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002338)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21370 AT2G21370 AT2G21370 AT2G21370
fragaria_vesca	FvH4_2g10090 FvH4_2g10090 FvH4_2g10090 FvH4_2g10090
malus_domestica	MD10G1065800.v1.1
prunus_persica	Prupe.8G087700_v2.0.a1 Prupe.8G087700_v2.0.a1
pyrus_communis	pycom10g05120
rosa_chinensis	RchiOBHm_Chr3g0496591 RchiOBHm_Chr4g0423361 RchiOBHm_Chr6g0267041
rosa_laevigata	RLG00000003987 RLG00000014047 RLG00000018837 RLG00000028975
rosa_multiflora	Rmu_sc0013804.1_g000007 Rmu_sc0030781.1_g000001 Rmu_sc0033156.1_g000001 Rmu_sc0033555.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147730 Rroxscaffold_2G00147740 Rroxscaffold_7G00201210
rosa_rugosa	Rorug01G0215500 Rorug02G0305900
rosa_samantha	Rh2BG290800 Rh2BG290900 Rh2DG285900 Rh3AG330100 Rh3CG362900 Rh3DG366000 Rh5CG284800 Rh6CG099100 Rh6CG146300 Rh6CG146400 Rh7BG254600 Rh7BG468800
rosa_wichuraiana	Rw3G028900 Rw6G013010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	388
AclWI	GGATC	2 cut(s)	233, 302
AcsI	RAATTY	1 cut(s)	195
AfaI	GTAC	1 cut(s)	507
AgsI	TTSAA	4 cut(s)	66, 168, 377, 536
AjiI	CACGTC	1 cut(s)	338
AjnI	CCWGG	1 cut(s)	45
AluBI	AGCT	3 cut(s)	251, 404, 557
AluI	AGCT	3 cut(s)	251, 404, 557
Alw21I	GWGCWC	1 cut(s)	92
AlwI	GGATC	2 cut(s)	233, 302
ApeKI	GCWGC	2 cut(s)	545, 557
ApoI	RAATTY	1 cut(s)	195
AspLEI	GCGC	2 cut(s)	388, 431
AsuHPI	GGTGA	1 cut(s)	299
Bbv12I	GWGCWC	1 cut(s)	92
BbvI	GCAGC	2 cut(s)	532, 544
BciT130I	CCWGG	1 cut(s)	47
BciVI	GTATCC	1 cut(s)	53
BfaI	CTAG	3 cut(s)	96, 260, 425
BfuI	GTATCC	1 cut(s)	53
BisI	GCNGC	2 cut(s)	546, 558
BlpI	GCTNAGC	1 cut(s)	86
BlsI	GCNGC	2 cut(s)	547, 559
BmcAI	AGTACT	1 cut(s)	507
Bme1390I	CCNGG	1 cut(s)	47
BmgBI	CACGTC	1 cut(s)	338
BmiI	GGNNCC	2 cut(s)	321, 580
BmrFI	CCNGG	1 cut(s)	47
BmsI	GCATC	1 cut(s)	97
BpmI	CTGGAG	1 cut(s)	236
Bpu1102I	GCTNAGC	1 cut(s)	86
BpuEI	CTTGAG	1 cut(s)	401
BsaJI	CCNNGG	3 cut(s)	243, 540, 583
Bse1I	ACTGG	3 cut(s)	178, 219, 299
Bse3DI	GCAATG	1 cut(s)	381
BseBI	CCWGG	1 cut(s)	47
BseDI	CCNNGG	3 cut(s)	243, 540, 583
BseGI	GGATG	1 cut(s)	112
BseMI	GCAATG	1 cut(s)	381
BseMII	CTCAG	1 cut(s)	77
BseNI	ACTGG	3 cut(s)	178, 219, 299
BseRI	GAGGAG	1 cut(s)	246
BseXI	GCAGC	2 cut(s)	532, 544
Bsh1236I	CGCG	1 cut(s)	388
BsiHKAI	GWGCWC	1 cut(s)	92
BsiSI	CCGG	1 cut(s)	459
Bsp1286I	GDGCHC	1 cut(s)	92
Bsp143I	GATC	2 cut(s)	238, 307
Bsp1720I	GCTNAGC	1 cut(s)	86
Bsp19I	CCATGG	2 cut(s)	243, 583
BspCNI	CTCAG	1 cut(s)	78
BspFNI	CGCG	1 cut(s)	388
BspLI	GGNNCC	2 cut(s)	321, 580
BspPI	GGATC	2 cut(s)	233, 302
BsrDI	GCAATG	1 cut(s)	381
BsrI	ACTGG	3 cut(s)	178, 219, 299
BssECI	CCNNGG	3 cut(s)	243, 540, 583
BssMI	GATC	2 cut(s)	238, 307
BssT1I	CCWWGG	2 cut(s)	243, 583
Bst2UI	CCWGG	1 cut(s)	47
Bst4CI	ACNGT	1 cut(s)	114
BstDEI	CTNAG	2 cut(s)	86, 188
BstDSI	CCRYGG	2 cut(s)	243, 583
BstF5I	GGATG	1 cut(s)	112
BstFNI	CGCG	1 cut(s)	388
BstHHI	GCGC	2 cut(s)	388, 431
BstKTI	GATC	2 cut(s)	241, 310
BstMBI	GATC	2 cut(s)	238, 307
BstMWI	GCNNNNNNNGC	2 cut(s)	554, 566
BstNI	CCWGG	1 cut(s)	47
BstSCI	CCNGG	1 cut(s)	45
BstUI	CGCG	1 cut(s)	388
BstV1I	GCAGC	2 cut(s)	532, 544
BstX2I	RGATCY	1 cut(s)	307
BstYI	RGATCY	1 cut(s)	307
BsuI	GTATCC	1 cut(s)	53
BtgI	CCRYGG	2 cut(s)	243, 583
BtgZI	GCGATG	1 cut(s)	116
BtrI	CACGTC	1 cut(s)	338
BtsCI	GGATG	1 cut(s)	112
BtsI	GCAGTG	1 cut(s)	272
BtsIMutI	CAGTG	3 cut(s)	201, 272, 306
CfoI	GCGC	2 cut(s)	388, 431
Csp6I	GTAC	1 cut(s)	506
CviAII	CATG	3 cut(s)	244, 365, 584
CviJI	RGCY	8 cut(s)	151, 251, 320, 404, 458, 545, 557, 569
CviKI_1	RGCY	8 cut(s)	151, 251, 320, 404, 458, 545, 557, 569
CviQI	GTAC	1 cut(s)	506
DdeI	CTNAG	2 cut(s)	86, 188
DpnI	GATC	2 cut(s)	240, 309
DpnII	GATC	2 cut(s)	238, 307
Eco130I	CCWWGG	2 cut(s)	243, 583
EcoRII	CCWGG	1 cut(s)	45
EcoT14I	CCWWGG	2 cut(s)	243, 583
ErhI	CCWWGG	2 cut(s)	243, 583
FaeI	CATG	3 cut(s)	247, 368, 587
FaiI	YATR	9 cut(s)	77, 126, 245, 317, 366, 392, 550, 552, 585
FatI	CATG	3 cut(s)	243, 364, 583
FauNDI	CATATG	1 cut(s)	550
Fnu4HI	GCNGC	2 cut(s)	546, 558
FokI	GGATG	1 cut(s)	119
Fsp4HI	GCNGC	2 cut(s)	546, 558
FspBI	CTAG	3 cut(s)	96, 260, 425
GlaI	GCGC	2 cut(s)	387, 430
GluI	GCNGC	2 cut(s)	546, 558
GsuI	CTGGAG	1 cut(s)	236
HapII	CCGG	1 cut(s)	459
HhaI	GCGC	2 cut(s)	388, 431
Hin1II	CATG	3 cut(s)	247, 368, 587
Hin6I	GCGC	2 cut(s)	386, 429
HinP1I	GCGC	2 cut(s)	386, 429
HindIII	AAGCTT	2 cut(s)	249, 402
HinfI	GANTC	2 cut(s)	370, 377
HpaII	CCGG	1 cut(s)	459
HphI	GGTGA	1 cut(s)	299
Hpy166II	GTNNAC	2 cut(s)	230, 453
Hpy188I	TCNGA	1 cut(s)	312
Hpy188III	TCNNGA	3 cut(s)	260, 341, 374
Hpy8I	GTNNAC	2 cut(s)	230, 453
HpyCH4III	ACNGT	1 cut(s)	114
HpyCH4IV	ACGT	1 cut(s)	337
HpyCH4V	TGCA	5 cut(s)	110, 277, 364, 530, 548
HpyF10VI	GCNNNNNNNGC	2 cut(s)	554, 566
HpyF3I	CTNAG	2 cut(s)	86, 188
HpySE526I	ACGT	1 cut(s)	337
Hsp92II	CATG	3 cut(s)	247, 368, 587
HspAI	GCGC	2 cut(s)	386, 429
Kzo9I	GATC	2 cut(s)	238, 307
LmnI	GCTCC	3 cut(s)	179, 325, 554
LpnPI	CCDG	8 cut(s)	32, 59, 159, 200, 312, 354, 472, 531
Lsp1109I	GCAGC	2 cut(s)	532, 544
LweI	GCATC	1 cut(s)	97
MaeI	CTAG	3 cut(s)	96, 260, 425
MaeII	ACGT	1 cut(s)	337
MaeIII	GTNAC	1 cut(s)	49
MalI	GATC	2 cut(s)	240, 309
MboI	GATC	2 cut(s)	238, 307
MflI	RGATCY	1 cut(s)	307
MhlI	GDGCHC	1 cut(s)	92
MluCI	AATT	3 cut(s)	195, 221, 531
MmeI	TCCRAC	1 cut(s)	136
MnlI	CCTC	8 cut(s)	97, 152, 267, 343, 388, 455, 535, 567
MspI	CCGG	1 cut(s)	459
MspR9I	CCNGG	1 cut(s)	47
MvaI	CCWGG	1 cut(s)	47
MvnI	CGCG	1 cut(s)	388
MwoI	GCNNNNNNNGC	2 cut(s)	554, 566
NcoI	CCATGG	2 cut(s)	243, 583
NdeI	CATATG	1 cut(s)	550
NdeII	GATC	2 cut(s)	238, 307
NlaIII	CATG	3 cut(s)	247, 368, 587
NlaIV	GGNNCC	2 cut(s)	321, 580
PfeI	GAWTC	2 cut(s)	370, 377
PkrI	GCNGC	2 cut(s)	547, 559
Psp6I	CCWGG	1 cut(s)	45
PspGI	CCWGG	1 cut(s)	45
PspN4I	GGNNCC	2 cut(s)	321, 580
PsuI	RGATCY	1 cut(s)	307
RsaI	GTAC	1 cut(s)	507
RsaNI	GTAC	1 cut(s)	506
SatI	GCNGC	2 cut(s)	546, 558
Sau3AI	GATC	2 cut(s)	238, 307
ScaI	AGTACT	1 cut(s)	507
ScrFI	CCNGG	1 cut(s)	47
SduI	GDGCHC	1 cut(s)	92
SetI	ASST	8 cut(s)	51, 163, 253, 340, 354, 406, 466, 559
SfaNI	GCATC	1 cut(s)	97
SmlI	CTYRAG	1 cut(s)	416
SmoI	CTYRAG	1 cut(s)	416
Sse9I	AATT	3 cut(s)	195, 221, 531
SspMI	CTAG	3 cut(s)	96, 260, 425
StyD4I	CCNGG	1 cut(s)	45
StyI	CCWWGG	2 cut(s)	243, 583
TaaI	ACNGT	1 cut(s)	114
TaiI	ACGT	1 cut(s)	340
TasI	AATT	3 cut(s)	195, 221, 531
TatI	WGTACW	1 cut(s)	505
TfiI	GAWTC	2 cut(s)	370, 377
TscAI	CASTG	3 cut(s)	208, 279, 306
TseI	GCWGC	2 cut(s)	545, 557
TspDTI	ATGAA	1 cut(s)	459
TspRI	CASTG	3 cut(s)	208, 279, 306
XapI	RAATTY	1 cut(s)	195
XbaI	TCTAGA	1 cut(s)	259
XspI	CTAG	3 cut(s)	96, 260, 425
ZrmI	AGTACT	1 cut(s)	507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.