Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0002338

Physical Location & Seq

Genomic Coordinates Forward (+)

10959697 .. 10961131

Gene Structure 1435 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG099100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGCCCACTATTGATTATTTAGCAAATAGTCTAAAAGTTTGTATCCAGGTAACTTCATTGGGTTCAACACTTGCCATAAAACTGCTGAGCACTACTAGGATTGAGGATGCATGGTTTGGGGTGTATAGTCATCGCCTTGATGATAAGTGGCTTGTTGGAGGTGCTAATTCAAATACTGGTGGAGCAGTTCTTACACAAATTTTCACTGACGAGCAACTGGAGAAATTGAGTGAACAGATTGATCCCATGGAAGCTTCTCCTCTTGACTATTACCCACTGCAATCAGTTGGTGAGAGATTTCCAGTGGCAGATCCGAATATGGCTCCAAGATACTTGTTTTTTAAGGGAAGAGGAAATAAATATGAGTGGTGCATTAGAGTACGTAGTATCTTTTGCACATATGATTATATCCTAATTTGTGGAAGCATTGTCAATCTTTCGCCTAAAAAAAATAGTACACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0006793 GO:0006796 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019150 GO:0019200 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044262 GO:0044424 GO:0044444 GO:0044464 GO:0046835 GO:0071704 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FGGY_C FGGY_N

Protein Analysis

154

Amino Acids

17.34

Weight (kDa)

5.8

Isoelectric Point (pI)

32.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002338)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21370 AT2G21370 AT2G21370 AT2G21370
fragaria_vesca	FvH4_2g10090 FvH4_2g10090 FvH4_2g10090 FvH4_2g10090
malus_domestica	MD10G1065800.v1.1
prunus_persica	Prupe.8G087700_v2.0.a1 Prupe.8G087700_v2.0.a1
pyrus_communis	pycom10g05120
rosa_chinensis	RchiOBHm_Chr3g0496591 RchiOBHm_Chr4g0423361 RchiOBHm_Chr6g0267041
rosa_laevigata	RLG00000003987 RLG00000014047 RLG00000018837 RLG00000028975
rosa_multiflora	Rmu_sc0013804.1_g000007 Rmu_sc0030781.1_g000001 Rmu_sc0033156.1_g000001 Rmu_sc0033555.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147730 Rroxscaffold_2G00147740 Rroxscaffold_7G00201210
rosa_rugosa	Rorug01G0215500 Rorug02G0305900
rosa_samantha	Rh2BG290800 Rh2BG290900 Rh2DG285900 Rh3AG330100 Rh3CG362900 Rh3DG366000 Rh5CG284800 Rh6CG099100 Rh6CG146300 Rh6CG146400 Rh7BG254600 Rh7BG468800
rosa_wichuraiana	Rw3G028900 Rw6G013010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	236, 305
AcsI	RAATTY	1 cut(s)	198
AfaI	GTAC	2 cut(s)	381, 457
AgsI	TTSAA	2 cut(s)	66, 171
AjnI	CCWGG	1 cut(s)	45
AluBI	AGCT	1 cut(s)	254
AluI	AGCT	1 cut(s)	254
Alw21I	GWGCWC	1 cut(s)	92
AlwI	GGATC	2 cut(s)	236, 305
ApoI	RAATTY	1 cut(s)	198
AsuHPI	GGTGA	1 cut(s)	302
Bbv12I	GWGCWC	1 cut(s)	92
BciT130I	CCWGG	1 cut(s)	47
BciVI	GTATCC	1 cut(s)	53
BfaI	CTAG	1 cut(s)	96
BfuI	GTATCC	1 cut(s)	53
BlpI	GCTNAGC	1 cut(s)	86
Bme1390I	CCNGG	1 cut(s)	47
BmiI	GGNNCC	1 cut(s)	324
BmrFI	CCNGG	1 cut(s)	47
BmsI	GCATC	1 cut(s)	97
BpmI	CTGGAG	1 cut(s)	239
Bpu1102I	GCTNAGC	1 cut(s)	86
BsaAI	YACGTR	1 cut(s)	383
BsaJI	CCNNGG	1 cut(s)	246
Bse1I	ACTGG	3 cut(s)	181, 222, 302
BseBI	CCWGG	1 cut(s)	47
BseDI	CCNNGG	1 cut(s)	246
BseGI	GGATG	1 cut(s)	112
BseMII	CTCAG	1 cut(s)	77
BseNI	ACTGG	3 cut(s)	181, 222, 302
BseRI	GAGGAG	1 cut(s)	249
BsiHKAI	GWGCWC	1 cut(s)	92
Bsp1286I	GDGCHC	1 cut(s)	92
Bsp143I	GATC	2 cut(s)	241, 310
Bsp1720I	GCTNAGC	1 cut(s)	86
Bsp19I	CCATGG	1 cut(s)	246
BspCNI	CTCAG	1 cut(s)	78
BspLI	GGNNCC	1 cut(s)	324
BspPI	GGATC	2 cut(s)	236, 305
BsrI	ACTGG	3 cut(s)	181, 222, 302
BssECI	CCNNGG	1 cut(s)	246
BssMI	GATC	2 cut(s)	241, 310
BssT1I	CCWWGG	1 cut(s)	246
Bst2UI	CCWGG	1 cut(s)	47
Bst6I	CTCTTC	1 cut(s)	343
BstBAI	YACGTR	1 cut(s)	383
BstDEI	CTNAG	1 cut(s)	86
BstDSI	CCRYGG	1 cut(s)	246
BstF5I	GGATG	1 cut(s)	112
BstKTI	GATC	2 cut(s)	244, 313
BstMBI	GATC	2 cut(s)	241, 310
BstNI	CCWGG	1 cut(s)	47
BstSCI	CCNGG	1 cut(s)	45
BstSNI	TACGTA	1 cut(s)	383
BstX2I	RGATCY	1 cut(s)	310
BstYI	RGATCY	1 cut(s)	310
BsuI	GTATCC	1 cut(s)	53
BtgI	CCRYGG	1 cut(s)	246
BtgZI	GCGATG	1 cut(s)	116
BtsCI	GGATG	1 cut(s)	112
BtsI	GCAGTG	1 cut(s)	275
BtsIMutI	CAGTG	3 cut(s)	204, 275, 309
Csp6I	GTAC	2 cut(s)	380, 456
CviAII	CATG	2 cut(s)	111, 247
CviJI	RGCY	3 cut(s)	151, 254, 323
CviKI_1	RGCY	3 cut(s)	151, 254, 323
CviQI	GTAC	2 cut(s)	380, 456
DdeI	CTNAG	1 cut(s)	86
DpnI	GATC	2 cut(s)	243, 312
DpnII	GATC	2 cut(s)	241, 310
Eam1104I	CTCTTC	1 cut(s)	343
EarI	CTCTTC	1 cut(s)	343
Eco105I	TACGTA	1 cut(s)	383
Eco130I	CCWWGG	1 cut(s)	246
EcoRII	CCWGG	1 cut(s)	45
EcoT14I	CCWWGG	1 cut(s)	246
EcoT22I	ATGCAT	1 cut(s)	112
ErhI	CCWWGG	1 cut(s)	246
FaeI	CATG	2 cut(s)	114, 250
FaiI	YATR	9 cut(s)	77, 112, 126, 248, 320, 363, 400, 402, 408
FatI	CATG	2 cut(s)	110, 246
FauNDI	CATATG	1 cut(s)	400
FokI	GGATG	1 cut(s)	119
FspBI	CTAG	1 cut(s)	96
GsuI	CTGGAG	1 cut(s)	239
Hin1II	CATG	2 cut(s)	114, 250
HindIII	AAGCTT	1 cut(s)	252
HphI	GGTGA	1 cut(s)	302
Hpy166II	GTNNAC	2 cut(s)	233, 458
Hpy188I	TCNGA	1 cut(s)	315
Hpy188III	TCNNGA	1 cut(s)	263
Hpy8I	GTNNAC	2 cut(s)	233, 458
HpyCH4IV	ACGT	1 cut(s)	382
HpyCH4V	TGCA	4 cut(s)	110, 280, 372, 396
HpyF3I	CTNAG	1 cut(s)	86
HpySE526I	ACGT	1 cut(s)	382
Hsp92II	CATG	2 cut(s)	114, 250
Kzo9I	GATC	2 cut(s)	241, 310
LmnI	GCTCC	2 cut(s)	182, 328
LpnPI	CCDG	5 cut(s)	32, 59, 162, 203, 315
LweI	GCATC	1 cut(s)	97
MaeI	CTAG	1 cut(s)	96
MaeII	ACGT	1 cut(s)	382
MaeIII	GTNAC	1 cut(s)	49
MalI	GATC	2 cut(s)	243, 312
MboI	GATC	2 cut(s)	241, 310
MboII	GAAGA	1 cut(s)	360
MflI	RGATCY	1 cut(s)	310
MhlI	GDGCHC	1 cut(s)	92
MluCI	AATT	4 cut(s)	166, 198, 224, 414
MmeI	TCCRAC	1 cut(s)	136
MnlI	CCTC	4 cut(s)	97, 152, 270, 344
Mph1103I	ATGCAT	1 cut(s)	112
MseI	TTAA	1 cut(s)	342
MspR9I	CCNGG	1 cut(s)	47
MvaI	CCWGG	1 cut(s)	47
NcoI	CCATGG	1 cut(s)	246
NdeI	CATATG	1 cut(s)	400
NdeII	GATC	2 cut(s)	241, 310
NlaIII	CATG	2 cut(s)	114, 250
NlaIV	GGNNCC	1 cut(s)	324
NsiI	ATGCAT	1 cut(s)	112
Ppu21I	YACGTR	1 cut(s)	383
Psp6I	CCWGG	1 cut(s)	45
PspGI	CCWGG	1 cut(s)	45
PspN4I	GGNNCC	1 cut(s)	324
PsuI	RGATCY	1 cut(s)	310
RsaI	GTAC	2 cut(s)	381, 457
RsaNI	GTAC	2 cut(s)	380, 456
SaqAI	TTAA	1 cut(s)	342
Sau3AI	GATC	2 cut(s)	241, 310
ScrFI	CCNGG	1 cut(s)	47
SduI	GDGCHC	1 cut(s)	92
SetI	ASST	4 cut(s)	51, 163, 256, 385
SfaNI	GCATC	1 cut(s)	97
SnaBI	TACGTA	1 cut(s)	383
Sse9I	AATT	4 cut(s)	166, 198, 224, 414
SspMI	CTAG	1 cut(s)	96
StyD4I	CCNGG	1 cut(s)	45
StyI	CCWWGG	1 cut(s)	246
TaiI	ACGT	1 cut(s)	385
TasI	AATT	4 cut(s)	166, 198, 224, 414
TatI	WGTACW	1 cut(s)	455
Tru1I	TTAA	1 cut(s)	342
Tru9I	TTAA	1 cut(s)	342
TscAI	CASTG	3 cut(s)	211, 282, 309
TspDTI	ATGAA	1 cut(s)	45
TspRI	CASTG	3 cut(s)	211, 282, 309
XapI	RAATTY	1 cut(s)	198
XspI	CTAG	1 cut(s)	96
Zsp2I	ATGCAT	1 cut(s)	112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.