Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0033555.1

Orthogroup ID

OG0002338

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 573

Gene Structure 573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0033555.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 268 bp

attacacccacgtccagaaagtgaggtggagtttttgcatgggattcttgaatccattgcgcgtatagaggcaaaagcttacaacttactcaaggaactaggcgcaacccaagttgatgaagtgttcacagccggaggtggtgcgagaaatgagaaatggacaaagattagagagagagtacttggtttgcctgtaagttctgcaattcaaaccgaggctgcatatggagctgctttgttggctttgaggggaatccatgagaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0006793 GO:0006796 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019150 GO:0019200 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044262 GO:0044424 GO:0044444 GO:0044464 GO:0046835 GO:0071704 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FGGY_C FGGY_N

Protein Analysis

88

Amino Acids

9.61

Weight (kDa)

6.34

Isoelectric Point (pI)

28.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002338)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21370 AT2G21370 AT2G21370 AT2G21370
fragaria_vesca	FvH4_2g10090 FvH4_2g10090 FvH4_2g10090 FvH4_2g10090
malus_domestica	MD10G1065800.v1.1
prunus_persica	Prupe.8G087700_v2.0.a1 Prupe.8G087700_v2.0.a1
pyrus_communis	pycom10g05120
rosa_chinensis	RchiOBHm_Chr3g0496591 RchiOBHm_Chr4g0423361 RchiOBHm_Chr6g0267041
rosa_laevigata	RLG00000003987 RLG00000014047 RLG00000018837 RLG00000028975
rosa_multiflora	Rmu_sc0013804.1_g000007 Rmu_sc0030781.1_g000001 Rmu_sc0033156.1_g000001 Rmu_sc0033555.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147730 Rroxscaffold_2G00147740 Rroxscaffold_7G00201210
rosa_rugosa	Rorug01G0215500 Rorug02G0305900
rosa_samantha	Rh2BG290800 Rh2BG290900 Rh2DG285900 Rh3AG330100 Rh3CG362900 Rh3DG366000 Rh5CG284800 Rh6CG099100 Rh6CG146300 Rh6CG146400 Rh7BG254600 Rh7BG468800
rosa_wichuraiana	Rw3G028900 Rw6G013010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	62
AfaI	GTAC	1 cut(s)	181
AgsI	TTSAA	2 cut(s)	51, 210
AjiI	CACGTC	1 cut(s)	12
AluBI	AGCT	2 cut(s)	78, 231
AluI	AGCT	2 cut(s)	78, 231
ApeKI	GCWGC	2 cut(s)	219, 231
AspLEI	GCGC	2 cut(s)	62, 105
BbvI	GCAGC	2 cut(s)	206, 218
BfaI	CTAG	1 cut(s)	99
BisI	GCNGC	2 cut(s)	220, 232
BlsI	GCNGC	2 cut(s)	221, 233
BmcAI	AGTACT	1 cut(s)	181
BmgBI	CACGTC	1 cut(s)	12
BpuEI	CTTGAG	1 cut(s)	75
BsaJI	CCNNGG	1 cut(s)	214
Bse3DI	GCAATG	1 cut(s)	55
BseDI	CCNNGG	1 cut(s)	214
BseMI	GCAATG	1 cut(s)	55
BseXI	GCAGC	2 cut(s)	206, 218
Bsh1236I	CGCG	1 cut(s)	62
BsiSI	CCGG	1 cut(s)	133
BspFNI	CGCG	1 cut(s)	62
BsrDI	GCAATG	1 cut(s)	55
BssECI	CCNNGG	1 cut(s)	214
BstFNI	CGCG	1 cut(s)	62
BstHHI	GCGC	2 cut(s)	62, 105
BstMWI	GCNNNNNNNGC	2 cut(s)	228, 240
BstUI	CGCG	1 cut(s)	62
BstV1I	GCAGC	2 cut(s)	206, 218
BtrI	CACGTC	1 cut(s)	12
CfoI	GCGC	2 cut(s)	62, 105
Csp6I	GTAC	1 cut(s)	180
CviAII	CATG	2 cut(s)	39, 258
CviJI	RGCY	5 cut(s)	78, 132, 219, 231, 243
CviKI_1	RGCY	5 cut(s)	78, 132, 219, 231, 243
CviQI	GTAC	1 cut(s)	180
FaeI	CATG	2 cut(s)	42, 261
FaiI	YATR	5 cut(s)	40, 66, 224, 226, 259
FatI	CATG	2 cut(s)	38, 257
FauNDI	CATATG	1 cut(s)	224
Fnu4HI	GCNGC	2 cut(s)	220, 232
Fsp4HI	GCNGC	2 cut(s)	220, 232
FspBI	CTAG	1 cut(s)	99
GlaI	GCGC	2 cut(s)	61, 104
GluI	GCNGC	2 cut(s)	220, 232
HapII	CCGG	1 cut(s)	133
HhaI	GCGC	2 cut(s)	62, 105
Hin1II	CATG	2 cut(s)	42, 261
Hin6I	GCGC	2 cut(s)	60, 103
HinP1I	GCGC	2 cut(s)	60, 103
HindIII	AAGCTT	1 cut(s)	76
HinfI	GANTC	3 cut(s)	44, 51, 253
HpaII	CCGG	1 cut(s)	133
Hpy166II	GTNNAC	1 cut(s)	127
Hpy188III	TCNNGA	2 cut(s)	15, 48
Hpy8I	GTNNAC	1 cut(s)	127
HpyCH4IV	ACGT	1 cut(s)	11
HpyCH4V	TGCA	3 cut(s)	38, 204, 222
HpyF10VI	GCNNNNNNNGC	2 cut(s)	228, 240
HpySE526I	ACGT	1 cut(s)	11
Hsp92II	CATG	2 cut(s)	42, 261
HspAI	GCGC	2 cut(s)	60, 103
LmnI	GCTCC	1 cut(s)	228
LpnPI	CCDG	3 cut(s)	28, 146, 205
Lsp1109I	GCAGC	2 cut(s)	206, 218
MaeI	CTAG	1 cut(s)	99
MaeII	ACGT	1 cut(s)	11
MluCI	AATT	1 cut(s)	205
MnlI	CCTC	5 cut(s)	17, 62, 129, 209, 241
MspI	CCGG	1 cut(s)	133
MvnI	CGCG	1 cut(s)	62
MwoI	GCNNNNNNNGC	2 cut(s)	228, 240
NdeI	CATATG	1 cut(s)	224
NlaIII	CATG	2 cut(s)	42, 261
PfeI	GAWTC	3 cut(s)	44, 51, 253
PkrI	GCNGC	2 cut(s)	221, 233
RsaI	GTAC	1 cut(s)	181
RsaNI	GTAC	1 cut(s)	180
SatI	GCNGC	2 cut(s)	220, 232
ScaI	AGTACT	1 cut(s)	181
SetI	ASST	5 cut(s)	14, 28, 80, 140, 233
SmlI	CTYRAG	1 cut(s)	90
SmoI	CTYRAG	1 cut(s)	90
Sse9I	AATT	1 cut(s)	205
SspMI	CTAG	1 cut(s)	99
TaiI	ACGT	1 cut(s)	14
TasI	AATT	1 cut(s)	205
TatI	WGTACW	1 cut(s)	179
TfiI	GAWTC	3 cut(s)	44, 51, 253
TseI	GCWGC	2 cut(s)	219, 231
TspDTI	ATGAA	1 cut(s)	133
XspI	CTAG	1 cut(s)	99
ZrmI	AGTACT	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.