Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0002338

Physical Location & Seq

Genomic Coordinates Forward (+)

19121919 .. 19124400

Gene Structure 2482 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG146400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGGATTGGGCCCGTTCATGGAAGGCCACACTCTTCTCACTTCTTGGAGACATTCCATCTCATCTTCGTAAACTGATTGCTTCCATTTCCATTGATGGGACTTCTGCAACTACTCTCATTGTTGACAGCAACACAGGAGAGCCGTTATGGAGACCTTTCCTCTACAATGAGAGCTGCCCTGATGCTTTACCGACGGTTAAATCCATTGCTCCTCCAAACCATACAGTCTGCTCTGGTTCCTCTACTCTGTGCAAGCTTGTCTCCTGGTGGGAGAATGATGATCCAAATAAAAAATCTGCACTACTGTTGCACCAAGCAGATTGGCTTTTGTGGCTTCTTCATGGAAAACTCGGAGTGTCTGATTATAATAATGCTCTGAAGGTTGGTTATGATCCTGAGCTTGAATCCTATCCACCCTGGCTACTCTCTCAGCCCTATTCACAACTTTTACCTTCTGTTAGAGCTCCTGGAACTTCAATCGGTCATTTGAAAGAGGACATTAGATCGGATTTTGGTTTTCCAAGTGATTGTGCTGTATGCACAGGAACCACTGATAGTATAGCAGCTTTTTTAGCAGCTCGTGCAACACAACCTGGGAAAGCTGTAACTTCTTTGGGTTCAACACTTGCCATAAAACTGCTGAGCACTACTAGGATTGAGGATGCACGGTTTGGGGTGTATAGTCATCGCCTTGATGATAAGTGGCTTGTTGGAGGTGCTTCAAATACTGGTGGAGCAGTTCTTAGACAAATTTTCACTGACGAGAAACTGGAGAAATTGAGTGAACAGATTGATCCCATGGAAGCTTCTCCTCTAGACTACTACCCACTGCAATCAGTTGGTGAGAGATTTCCAGTGGCAGATCCGAATATGGCTCCAAGATTACACCCACGTCCAGAAAGTGAGGTGGAGTTTTTGCATGGGATTCTTGAATCCATTGCGCGTATAGAGGCAAAAGCTTACAACTTACTCAAGGAACTAGGCGCAACCCAAGTTGATGAAGTGTTCACAGCCGGAGGTGGTGCGAGAAATGAGAAATGGACAAAGATTAGAGAGAGAGTACTTGGTTTGCCTGTAAGTTCTGCAATTCAAACCGAGGCTGCATATGGAGCTGCTTTGTTGGCTTTGAGGGGAACCCATGGGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0006793 GO:0006796 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019150 GO:0019200 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044262 GO:0044424 GO:0044444 GO:0044464 GO:0046835 GO:0071704 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FGGY_C FGGY_N

Protein Analysis

382

Amino Acids

41.68

Weight (kDa)

5.76

Isoelectric Point (pI)

34.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FGGY_C	PF02782	225 - 377	1.3e-10	FGGY family of carbohydrate kinases, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002338)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21370 AT2G21370 AT2G21370 AT2G21370
fragaria_vesca	FvH4_2g10090 FvH4_2g10090 FvH4_2g10090 FvH4_2g10090
malus_domestica	MD10G1065800.v1.1
prunus_persica	Prupe.8G087700_v2.0.a1 Prupe.8G087700_v2.0.a1
pyrus_communis	pycom10g05120
rosa_chinensis	RchiOBHm_Chr3g0496591 RchiOBHm_Chr4g0423361 RchiOBHm_Chr6g0267041
rosa_laevigata	RLG00000003987 RLG00000014047 RLG00000018837 RLG00000028975
rosa_multiflora	Rmu_sc0013804.1_g000007 Rmu_sc0030781.1_g000001 Rmu_sc0033156.1_g000001 Rmu_sc0033555.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147730 Rroxscaffold_2G00147740 Rroxscaffold_7G00201210
rosa_rugosa	Rorug01G0215500 Rorug02G0305900
rosa_samantha	Rh2BG290800 Rh2BG290900 Rh2DG285900 Rh3AG330100 Rh3CG362900 Rh3DG366000 Rh5CG284800 Rh6CG099100 Rh6CG146300 Rh6CG146400 Rh7BG254600 Rh7BG468800
rosa_wichuraiana	Rw3G028900 Rw6G013010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	366
AccII	CGCG	1 cut(s)	943
AclWI	GGATC	4 cut(s)	275, 386, 788, 857
AcsI	RAATTY	1 cut(s)	750
AcuI	CTGAAG	1 cut(s)	398
AfaI	GTAC	1 cut(s)	1062
AfiI	CCNNNNNNNGG	2 cut(s)	18, 96
AgsI	TTSAA	7 cut(s)	404, 477, 490, 621, 723, 932, 1091
AjiI	CACGTC	1 cut(s)	893
AjnI	CCWGG	4 cut(s)	263, 416, 466, 592
Alw21I	GWGCWC	2 cut(s)	466, 647
Alw26I	GTCTC	3 cut(s)	42, 145, 265
AlwI	GGATC	4 cut(s)	275, 386, 788, 857
AoxI	GGCC	2 cut(s)	9, 24
ApaI	GGGCCC	1 cut(s)	13
ApeKI	GCWGC	5 cut(s)	174, 563, 575, 1100, 1112
ApoI	RAATTY	1 cut(s)	750
AspLEI	GCGC	2 cut(s)	943, 986
AspS9I	GGNCC	2 cut(s)	9, 10
AsuHPI	GGTGA	1 cut(s)	854
BaeGI	GKGCMC	1 cut(s)	13
BanII	GRGCYC	2 cut(s)	13, 466
BauI	CACGAG	1 cut(s)	579
Bbv12I	GWGCWC	2 cut(s)	466, 647
BbvI	GCAGC	5 cut(s)	161, 575, 587, 1087, 1099
BccI	CCATC	2 cut(s)	64, 89
BceAI	ACGGC	1 cut(s)	127
BciT130I	CCWGG	4 cut(s)	265, 418, 468, 594
BcoDI	GTCTC	3 cut(s)	42, 145, 265
BfaI	CTAG	3 cut(s)	651, 815, 980
BisI	GCNGC	5 cut(s)	175, 564, 576, 1101, 1113
BlpI	GCTNAGC	1 cut(s)	641
BlsI	GCNGC	5 cut(s)	176, 565, 577, 1102, 1114
BmcAI	AGTACT	1 cut(s)	1062
Bme1390I	CCNGG	4 cut(s)	265, 418, 468, 594
BmgBI	CACGTC	1 cut(s)	893
BmgT120I	GGNCC	2 cut(s)	9, 10
BmiI	GGNNCC	5 cut(s)	11, 238, 547, 876, 1135
BmrFI	CCNGG	4 cut(s)	265, 418, 468, 594
BmsI	GCATC	2 cut(s)	172, 652
BpmI	CTGGAG	1 cut(s)	791
Bpu10I	CCTNAGC	1 cut(s)	396
Bpu1102I	GCTNAGC	1 cut(s)	641
BpuEI	CTTGAG	1 cut(s)	956
BsaI	GGTCTC	1 cut(s)	145
BsaJI	CCNNGG	5 cut(s)	416, 593, 798, 1095, 1138
Bsc4I	CCNNNNNNNGG	2 cut(s)	18, 96
Bse1I	ACTGG	3 cut(s)	733, 774, 854
Bse3DI	GCAATG	2 cut(s)	204, 936
BseBI	CCWGG	4 cut(s)	265, 418, 468, 594
BseDI	CCNNGG	5 cut(s)	416, 593, 798, 1095, 1138
BseGI	GGATG	1 cut(s)	667
BseLI	CCNNNNNNNGG	2 cut(s)	18, 96
BseMI	GCAATG	2 cut(s)	204, 936
BseMII	CTCAG	3 cut(s)	387, 443, 632
BseNI	ACTGG	3 cut(s)	733, 774, 854
BseRI	GAGGAG	2 cut(s)	201, 801
BseSI	GKGCMC	1 cut(s)	13
BseXI	GCAGC	5 cut(s)	161, 575, 587, 1087, 1099
BsgI	GTGCAG	1 cut(s)	282
Bsh1236I	CGCG	1 cut(s)	943
BshFI	GGCC	2 cut(s)	11, 26
BsiHKAI	GWGCWC	2 cut(s)	466, 647
BsiSI	CCGG	1 cut(s)	1014
BslFI	GGGAC	1 cut(s)	112
BslI	CCNNNNNNNGG	2 cut(s)	18, 96
BsmAI	GTCTC	3 cut(s)	42, 145, 265
BsmFI	GGGAC	1 cut(s)	112
BsnI	GGCC	2 cut(s)	11, 26
Bso31I	GGTCTC	1 cut(s)	145
Bsp120I	GGGCCC	1 cut(s)	9
Bsp1286I	GDGCHC	3 cut(s)	13, 466, 647
Bsp143I	GATC	5 cut(s)	280, 391, 503, 793, 862
Bsp1720I	GCTNAGC	1 cut(s)	641
Bsp19I	CCATGG	2 cut(s)	798, 1138
BspANI	GGCC	2 cut(s)	11, 26
BspCNI	CTCAG	3 cut(s)	388, 442, 633
BspFNI	CGCG	1 cut(s)	943
BspLI	GGNNCC	5 cut(s)	11, 238, 547, 876, 1135
BspPI	GGATC	4 cut(s)	275, 386, 788, 857
BspTNI	GGTCTC	1 cut(s)	145
BsrDI	GCAATG	2 cut(s)	204, 936
BsrI	ACTGG	3 cut(s)	733, 774, 854
BssECI	CCNNGG	5 cut(s)	416, 593, 798, 1095, 1138
BssMI	GATC	5 cut(s)	280, 391, 503, 793, 862
BssSI	CACGAG	1 cut(s)	579
BssT1I	CCWWGG	2 cut(s)	798, 1138
Bst2BI	CACGAG	1 cut(s)	579
Bst2UI	CCWGG	4 cut(s)	265, 418, 468, 594
Bst4CI	ACNGT	4 cut(s)	196, 226, 306, 669
Bst6I	CTCTTC	1 cut(s)	38
BstAPI	GCANNNNNTGC	1 cut(s)	581
BstC8I	GCNNGC	1 cut(s)	254
BstDEI	CTNAG	4 cut(s)	396, 429, 641, 743
BstDSI	CCRYGG	2 cut(s)	798, 1138
BstF5I	GGATG	1 cut(s)	667
BstFNI	CGCG	1 cut(s)	943
BstHHI	GCGC	2 cut(s)	943, 986
BstKTI	GATC	5 cut(s)	283, 394, 506, 796, 865
BstMAI	GTCTC	3 cut(s)	42, 145, 265
BstMBI	GATC	5 cut(s)	280, 391, 503, 793, 862
BstMWI	GCNNNNNNNGC	5 cut(s)	331, 572, 581, 1109, 1121
BstNI	CCWGG	4 cut(s)	265, 418, 468, 594
BstSCI	CCNGG	4 cut(s)	263, 416, 466, 592
BstSLI	GKGCMC	1 cut(s)	13
BstUI	CGCG	1 cut(s)	943
BstV1I	GCAGC	5 cut(s)	161, 575, 587, 1087, 1099
BstX2I	RGATCY	1 cut(s)	862
BstYI	RGATCY	1 cut(s)	862
BsuRI	GGCC	2 cut(s)	11, 26
BtgI	CCRYGG	2 cut(s)	798, 1138
BtgZI	GCGATG	1 cut(s)	671
BtrI	CACGTC	1 cut(s)	893
BtsCI	GGATG	1 cut(s)	667
BtsI	GCAGTG	1 cut(s)	827
BtsIMutI	CAGTG	4 cut(s)	549, 756, 827, 861
Cac8I	GCNNGC	1 cut(s)	254
CfoI	GCGC	2 cut(s)	943, 986
Cfr13I	GGNCC	2 cut(s)	9, 10
Csp6I	GTAC	1 cut(s)	1061
CviAII	CATG	5 cut(s)	18, 341, 799, 920, 1139
CviQI	GTAC	1 cut(s)	1061
DdeI	CTNAG	4 cut(s)	396, 429, 641, 743
DpnI	GATC	5 cut(s)	282, 393, 505, 795, 864
DpnII	GATC	5 cut(s)	280, 391, 503, 793, 862
Eam1104I	CTCTTC	1 cut(s)	38
EarI	CTCTTC	1 cut(s)	38
Ecl136II	GAGCTC	1 cut(s)	464
Eco130I	CCWWGG	2 cut(s)	798, 1138
Eco24I	GRGCYC	2 cut(s)	13, 466
Eco31I	GGTCTC	1 cut(s)	145
Eco53kI	GAGCTC	1 cut(s)	464
Eco57I	CTGAAG	1 cut(s)	398
EcoICRI	GAGCTC	1 cut(s)	464
EcoRII	CCWGG	4 cut(s)	263, 416, 466, 592
EcoT14I	CCWWGG	2 cut(s)	798, 1138
EcoT38I	GRGCYC	2 cut(s)	13, 466
ErhI	CCWWGG	2 cut(s)	798, 1138
FaeI	CATG	5 cut(s)	21, 344, 802, 923, 1142
FaqI	GGGAC	1 cut(s)	112
FatI	CATG	5 cut(s)	17, 340, 798, 919, 1138
FauNDI	CATATG	1 cut(s)	1105
Fnu4HI	GCNGC	5 cut(s)	175, 564, 576, 1101, 1113
FokI	GGATG	1 cut(s)	674
FriOI	GRGCYC	2 cut(s)	13, 466
Fsp4HI	GCNGC	5 cut(s)	175, 564, 576, 1101, 1113
FspBI	CTAG	3 cut(s)	651, 815, 980
GlaI	GCGC	2 cut(s)	942, 985
GluI	GCNGC	5 cut(s)	175, 564, 576, 1101, 1113
GsuI	CTGGAG	1 cut(s)	791
HaeIII	GGCC	2 cut(s)	11, 26
HapII	CCGG	1 cut(s)	1014
HhaI	GCGC	2 cut(s)	943, 986
Hin1II	CATG	5 cut(s)	21, 344, 802, 923, 1142
Hin6I	GCGC	2 cut(s)	941, 984
HinP1I	GCGC	2 cut(s)	941, 984
HincII	GTYRAC	1 cut(s)	124
HindII	GTYRAC	1 cut(s)	124
HindIII	AAGCTT	3 cut(s)	254, 804, 957
HinfI	GANTC	3 cut(s)	404, 925, 932
HpaII	CCGG	1 cut(s)	1014
HphI	GGTGA	1 cut(s)	854
Hpy166II	GTNNAC	4 cut(s)	71, 124, 785, 1008
Hpy188I	TCNGA	5 cut(s)	353, 361, 378, 508, 867
Hpy188III	TCNNGA	4 cut(s)	395, 815, 896, 929
Hpy8I	GTNNAC	4 cut(s)	71, 124, 785, 1008
Hpy99I	CGWCG	1 cut(s)	196
HpyAV	CCTTC	3 cut(s)	16, 373, 462
HpyCH4III	ACNGT	4 cut(s)	196, 226, 306, 669
HpyCH4IV	ACGT	1 cut(s)	892
HpyF10VI	GCNNNNNNNGC	5 cut(s)	331, 572, 581, 1109, 1121
HpyF3I	CTNAG	4 cut(s)	396, 429, 641, 743
HpySE526I	ACGT	1 cut(s)	892
Hsp92II	CATG	5 cut(s)	21, 344, 802, 923, 1142
HspAI	GCGC	2 cut(s)	941, 984
Kzo9I	GATC	5 cut(s)	280, 391, 503, 793, 862
LmnI	GCTCC	5 cut(s)	214, 469, 734, 880, 1109
Lsp1109I	GCAGC	5 cut(s)	161, 575, 587, 1087, 1099
LweI	GCATC	2 cut(s)	172, 652
MaeI	CTAG	3 cut(s)	651, 815, 980
MaeII	ACGT	1 cut(s)	892
MaeIII	GTNAC	1 cut(s)	604
MalI	GATC	5 cut(s)	282, 393, 505, 795, 864
MboI	GATC	5 cut(s)	280, 391, 503, 793, 862
MboII	GAAGA	3 cut(s)	25, 56, 329
MflI	RGATCY	1 cut(s)	862
MhlI	GDGCHC	3 cut(s)	13, 466, 647
MluCI	AATT	3 cut(s)	750, 776, 1086
MmeI	TCCRAC	1 cut(s)	691
MseI	TTAA	1 cut(s)	198
MspI	CCGG	1 cut(s)	1014
MspR9I	CCNGG	4 cut(s)	265, 418, 468, 594
MvaI	CCWGG	4 cut(s)	265, 418, 468, 594
MvnI	CGCG	1 cut(s)	943
MwoI	GCNNNNNNNGC	5 cut(s)	331, 572, 581, 1109, 1121
NcoI	CCATGG	2 cut(s)	798, 1138
NdeI	CATATG	1 cut(s)	1105
NdeII	GATC	5 cut(s)	280, 391, 503, 793, 862
NlaIII	CATG	5 cut(s)	21, 344, 802, 923, 1142
NlaIV	GGNNCC	5 cut(s)	11, 238, 547, 876, 1135
PfeI	GAWTC	3 cut(s)	404, 925, 932
PfoI	TCCNGGA	1 cut(s)	466
PkrI	GCNGC	5 cut(s)	176, 565, 577, 1102, 1114
PsiI	TTATAA	1 cut(s)	366
Psp124BI	GAGCTC	1 cut(s)	466
Psp6I	CCWGG	4 cut(s)	263, 416, 466, 592
PspGI	CCWGG	4 cut(s)	263, 416, 466, 592
PspN4I	GGNNCC	5 cut(s)	11, 238, 547, 876, 1135
PspOMI	GGGCCC	1 cut(s)	9
PspPI	GGNCC	2 cut(s)	9, 10
PsuI	RGATCY	1 cut(s)	862
RsaI	GTAC	1 cut(s)	1062
RsaNI	GTAC	1 cut(s)	1061
SacI	GAGCTC	1 cut(s)	466
SaqAI	TTAA	1 cut(s)	198
SatI	GCNGC	5 cut(s)	175, 564, 576, 1101, 1113
Sau3AI	GATC	5 cut(s)	280, 391, 503, 793, 862
Sau96I	GGNCC	2 cut(s)	9, 10
ScaI	AGTACT	1 cut(s)	1062
ScrFI	CCNGG	4 cut(s)	265, 418, 468, 594
SduI	GDGCHC	3 cut(s)	13, 466, 647
SfaNI	GCATC	2 cut(s)	172, 652
SmlI	CTYRAG	1 cut(s)	971
SmoI	CTYRAG	1 cut(s)	971
Sse9I	AATT	3 cut(s)	750, 776, 1086
SspMI	CTAG	3 cut(s)	651, 815, 980
SstI	GAGCTC	1 cut(s)	466
StyD4I	CCNGG	4 cut(s)	263, 416, 466, 592
StyI	CCWWGG	2 cut(s)	798, 1138
TaaI	ACNGT	4 cut(s)	196, 226, 306, 669
TaiI	ACGT	1 cut(s)	895
TaqII	GACCGA	1 cut(s)	470
TasI	AATT	3 cut(s)	750, 776, 1086
TatI	WGTACW	1 cut(s)	1060
TfiI	GAWTC	3 cut(s)	404, 925, 932
Tru1I	TTAA	1 cut(s)	198
Tru9I	TTAA	1 cut(s)	198
TscAI	CASTG	4 cut(s)	556, 763, 834, 861
TseI	GCWGC	5 cut(s)	174, 563, 575, 1100, 1112
TspDTI	ATGAA	3 cut(s)	6, 329, 1014
TspRI	CASTG	4 cut(s)	556, 763, 834, 861
XapI	RAATTY	1 cut(s)	750
XbaI	TCTAGA	1 cut(s)	814
XspI	CTAG	3 cut(s)	651, 815, 980
ZrmI	AGTACT	1 cut(s)	1062

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.