Rw6G013010

FGGY family of carbohydrate kinases, C-terminal domain

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Forward (+)
23988296 .. 23993407
5112 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G013010.1

Sequence Viewer

Length: 1473 bp
ATGGGGTTGATTCTCCATGAAGAATCAATTGATTTGATGAAGATAGGAAGAGAACCAGAGTTTCGTTGGTATCCTAGTCCAAGAAGGCAATCTCCACCAACTGGGTTGCACTTGAACAGAGCTCTGATCAAACTGAGAAGACCAAGAGGTCCAAGGCCAATGACTTTTGGGAGGATTGATACTAGTGAACCTGAAGTTGGGGAGCCGCTTTATCTGGGACTGGACTTTGGGACTTCTGGAGCGAGGTTTGCCCTTATCGATAAACGAGGGATAATTCATGCTGAGGGAAAGAGAGAATACCCTCTTTTTATGAGTGAAGAAAAAATGGATTGGGCCCGTTCATGGAAGGCCACACTCTTCTCACTTCTTGGAGACATTCCATCTCATCTTCGTAAACTGATTGCTTCCATTTCCATTGATGGGACTTCTGCAACTACTCTCATTGTTGACAGCAACACAGGAGAGCCGTTATGGAGACCTTTCCTCTACAATGAGAGCTGCCCTGATGCTTTACCGACGGTTAAATCCATTGCTCCTCCAAACCATACAGTCTGCTCTGGTTCCTCTACTCTGTGCAAGCTTGTCTCCTGGTGGGAGAATGATGATCCAAATAAAAAATCTGCACTACTGTTGCACCAAGCAGATTGGCTTTTGTGGCTTCTTCATGGAAAACTCGGAGTGTCTGATTATAATAATGCTCTGAAGGTTGGTTATGATCCTGAGCTTGAATCCTATCCACCCTGGCTACTCTCTCAGCCCTATTCACAACTTTTACCTTCTGTTAGAGCTCCTGGAACTTCAATCGGTCATTTGAAAGAGGACATTAGATCGGATTTTGGTTTTCCAAGTGATTGTGCTGTATGCACAGGAACCACTGATAGTATAGCAGCTTTTTTAGCAGCTCGTGCAACACAACCTGGGAAAGCTGTAACTTCTTTGGGTTCAACACTTGCCATAAAACTGCTGAGCACTACTAGGATTGAGGATGCACGGTTTGGGGTGTATAGTCATCGCCTTGATGATAAGTGGCTTGTTGGAGGTGCTTCAAATACTGGTGGAGCAGTTCTTAGACAAATTTTCACTGACGAGCAACTGGAGAAATTGAGTGAACAGATTGATCCCATGGAAGCTTCTCCTCTAGACTACTACCCACTGCAATCAGTTGGTGAGAGATTTCCAGTGGCAGATCCGAATATGGCTCCAAGATTACACCCACGTCCAGAAAGTGAGGTGGAGTTTTTGCATGGGATTCTTGAATCCATTGCGCGTATAGAGGCAAAAGCTTACAACTTACTCAAGGAACTAGGCGCAACCCAAGTTGATGAAGTGTTCACAGCCGGAGGTGGTGCGAGAAATGAGAAATGGACAAAGATTAGAGAGAGAGTACTTGGTTTGCCTGTAAGTTCTGCAATTCAAACCGAGGCTGCATACGGAGCTGCTTTGTTGGCTTTGAGGGGAATCCATGAGAAATGA

Protein Analysis

490

Amino Acids

54.17

Weight (kDa)

6.1

Isoelectric Point (pI)

44.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FGGY_N PF00370 70 - 299 2.1e-10 FGGY family of carbohydrate kinases, N-terminal domain
FGGY_C PF02782 333 - 485 2.2e-10 FGGY family of carbohydrate kinases, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 690
AasI GACNNNNNNGTC 1 cut(s) 147
AccB7I CCANNNNNTGG 1 cut(s) 101
AccII CGCG 1 cut(s) 1267
AciI CCGC 1 cut(s) 206
AclWI GGATC 4 cut(s) 599, 710, 1112, 1181
AcsI RAATTY 1 cut(s) 1074
AcuI CTGAAG 2 cut(s) 213, 722
AfaI GTAC 1 cut(s) 1386
AfiI CCNNNNNNNGG 4 cut(s) 101, 197, 342, 420
AgsI TTSAA 8 cut(s) 115, 728, 801, 814, 945, 1047, 1256, 1415
AhlI ACTAGT 1 cut(s) 182
AjiI CACGTC 1 cut(s) 1217
AjnI CCWGG 4 cut(s) 587, 740, 790, 916
AjuI GAANNNNNNNTTGG 2 cut(s) 180, 212
Alw21I GWGCWC 3 cut(s) 124, 790, 971
Alw26I GTCTC 3 cut(s) 366, 469, 589
AlwI GGATC 4 cut(s) 599, 710, 1112, 1181
AoxI GGCC 3 cut(s) 155, 333, 348
ApaI GGGCCC 1 cut(s) 337
ApeKI GCWGC 5 cut(s) 498, 887, 899, 1424, 1436
ApoI RAATTY 1 cut(s) 1074
AspLEI GCGC 2 cut(s) 1267, 1310
AspS9I GGNCC 3 cut(s) 149, 333, 334
AsuHPI GGTGA 1 cut(s) 1178
AvaII GGWCC 1 cut(s) 149
BaeGI GKGCMC 1 cut(s) 337
BanII GRGCYC 3 cut(s) 124, 337, 790
BauI CACGAG 1 cut(s) 903
BbsI GAAGAC 1 cut(s) 145
Bbv12I GWGCWC 3 cut(s) 124, 790, 971
BbvCI CCTCAGC 1 cut(s) 282
BbvI GCAGC 5 cut(s) 485, 899, 911, 1411, 1423
BccI CCATC 2 cut(s) 388, 413
BceAI ACGGC 1 cut(s) 451
BciT130I CCWGG 4 cut(s) 589, 742, 792, 918
BciVI GTATCC 1 cut(s) 81
BclI TGATCA 1 cut(s) 126
BcoDI GTCTC 3 cut(s) 366, 469, 589
BcuI ACTAGT 1 cut(s) 182
BfaI CTAG 5 cut(s) 75, 183, 975, 1139, 1304
BfuI GTATCC 1 cut(s) 81
BisI GCNGC 6 cut(s) 206, 499, 888, 900, 1425, 1437
BlpI GCTNAGC 1 cut(s) 965
BlsI GCNGC 6 cut(s) 207, 500, 889, 901, 1426, 1438
BmcAI AGTACT 1 cut(s) 1386
Bme1390I CCNGG 4 cut(s) 589, 742, 792, 918
Bme18I GGWCC 1 cut(s) 149
BmgBI CACGTC 1 cut(s) 1217
BmgT120I GGNCC 3 cut(s) 149, 333, 334
BmiI GGNNCC 5 cut(s) 204, 335, 562, 871, 1200
BmrFI CCNGG 4 cut(s) 589, 742, 792, 918
BmrI ACTGGG 1 cut(s) 111
BmsI GCATC 2 cut(s) 496, 976
BmuI ACTGGG 1 cut(s) 111
BpiI GAAGAC 1 cut(s) 145
BpmI CTGGAG 2 cut(s) 258, 1115
Bpu10I CCTNAGC 2 cut(s) 282, 720
Bpu1102I GCTNAGC 1 cut(s) 965
BpuEI CTTGAG 1 cut(s) 1280
Bsa29I ATCGAT 1 cut(s) 258
BsaI GGTCTC 1 cut(s) 469
BsaJI CCNNGG 5 cut(s) 152, 740, 917, 1122, 1419
Bsc4I CCNNNNNNNGG 4 cut(s) 101, 197, 342, 420
Bse1I ACTGG 5 cut(s) 106, 225, 1057, 1098, 1178
Bse3DI GCAATG 2 cut(s) 528, 1260
BseBI CCWGG 4 cut(s) 589, 742, 792, 918
BseCI ATCGAT 1 cut(s) 258
BseDI CCNNGG 5 cut(s) 152, 740, 917, 1122, 1419
BseGI GGATG 1 cut(s) 991
BseLI CCNNNNNNNGG 4 cut(s) 101, 197, 342, 420
BseMI GCAATG 2 cut(s) 528, 1260
BseMII CTCAG 5 cut(s) 125, 273, 711, 767, 956
BseNI ACTGG 5 cut(s) 106, 225, 1057, 1098, 1178
BseRI GAGGAG 2 cut(s) 525, 1125
BseSI GKGCMC 1 cut(s) 337
BseXI GCAGC 5 cut(s) 485, 899, 911, 1411, 1423
BsgI GTGCAG 1 cut(s) 606
Bsh1236I CGCG 1 cut(s) 1267
BshFI GGCC 3 cut(s) 157, 335, 350
BshVI ATCGAT 1 cut(s) 258
BsiHKAI GWGCWC 3 cut(s) 124, 790, 971
BsiSI CCGG 1 cut(s) 1338
BslFI GGGAC 3 cut(s) 231, 244, 436
BslI CCNNNNNNNGG 4 cut(s) 101, 197, 342, 420
BsmAI GTCTC 3 cut(s) 366, 469, 589
BsmFI GGGAC 3 cut(s) 231, 244, 436
BsnI GGCC 3 cut(s) 157, 335, 350
Bso31I GGTCTC 1 cut(s) 469
Bsp120I GGGCCC 1 cut(s) 333
Bsp1286I GDGCHC 4 cut(s) 124, 337, 790, 971
Bsp143I GATC 6 cut(s) 126, 604, 715, 827, 1117, 1186
Bsp1720I GCTNAGC 1 cut(s) 965
Bsp19I CCATGG 1 cut(s) 1122
BspACI CCGC 1 cut(s) 206
BspANI GGCC 3 cut(s) 157, 335, 350
BspCNI CTCAG 5 cut(s) 126, 274, 712, 766, 957
BspDI ATCGAT 1 cut(s) 258
BspFNI CGCG 1 cut(s) 1267
BspLI GGNNCC 5 cut(s) 204, 335, 562, 871, 1200
BspPI GGATC 4 cut(s) 599, 710, 1112, 1181
BspTNI GGTCTC 1 cut(s) 469
BsrDI GCAATG 2 cut(s) 528, 1260
BsrI ACTGG 5 cut(s) 106, 225, 1057, 1098, 1178
BssECI CCNNGG 5 cut(s) 152, 740, 917, 1122, 1419
BssMI GATC 6 cut(s) 126, 604, 715, 827, 1117, 1186
BssSI CACGAG 1 cut(s) 903
BssT1I CCWWGG 2 cut(s) 152, 1122
Bst2BI CACGAG 1 cut(s) 903
Bst2UI CCWGG 4 cut(s) 589, 742, 792, 918
Bst4CI ACNGT 4 cut(s) 520, 550, 630, 993
Bst6I CTCTTC 2 cut(s) 43, 362
BstAPI GCANNNNNTGC 1 cut(s) 905
BstC8I GCNNGC 1 cut(s) 578
BstDEI CTNAG 6 cut(s) 134, 282, 720, 753, 965, 1067
BstDSI CCRYGG 1 cut(s) 1122
BstF5I GGATG 1 cut(s) 991
BstFNI CGCG 1 cut(s) 1267
BstHHI GCGC 2 cut(s) 1267, 1310
BstKTI GATC 6 cut(s) 129, 607, 718, 830, 1120, 1189
BstMAI GTCTC 3 cut(s) 366, 469, 589
BstMBI GATC 6 cut(s) 126, 604, 715, 827, 1117, 1186
BstMWI GCNNNNNNNGC 6 cut(s) 248, 655, 896, 905, 1433, 1445
BstNI CCWGG 4 cut(s) 589, 742, 792, 918
BstSCI CCNGG 4 cut(s) 587, 740, 790, 916
BstSLI GKGCMC 1 cut(s) 337
BstUI CGCG 1 cut(s) 1267
BstV1I GCAGC 5 cut(s) 485, 899, 911, 1411, 1423
BstV2I GAAGAC 1 cut(s) 145
BstX2I RGATCY 1 cut(s) 1186
BstYI RGATCY 1 cut(s) 1186
Bsu15I ATCGAT 1 cut(s) 258
BsuI GTATCC 1 cut(s) 81
BsuRI GGCC 3 cut(s) 157, 335, 350
BsuTUI ATCGAT 1 cut(s) 258
BtgI CCRYGG 1 cut(s) 1122
BtgZI GCGATG 1 cut(s) 995
BtrI CACGTC 1 cut(s) 1217
BtsCI GGATG 1 cut(s) 991
BtsI GCAGTG 1 cut(s) 1151
BtsIMutI CAGTG 4 cut(s) 873, 1080, 1151, 1185
Cac8I GCNNGC 1 cut(s) 578
CfoI GCGC 2 cut(s) 1267, 1310
Cfr13I GGNCC 3 cut(s) 149, 333, 334
ClaI ATCGAT 1 cut(s) 258
Csp6I GTAC 1 cut(s) 1385
CviAII CATG 7 cut(s) 17, 278, 342, 665, 1123, 1244, 1463
CviQI GTAC 1 cut(s) 1385
DdeI CTNAG 6 cut(s) 134, 282, 720, 753, 965, 1067
DpnI GATC 6 cut(s) 128, 606, 717, 829, 1119, 1188
DpnII GATC 6 cut(s) 126, 604, 715, 827, 1117, 1186
DrdI GACNNNNNNGTC 1 cut(s) 147
DseDI GACNNNNNNGTC 1 cut(s) 147
Eam1104I CTCTTC 2 cut(s) 43, 362
EarI CTCTTC 2 cut(s) 43, 362
Ecl136II GAGCTC 2 cut(s) 122, 788
Eco130I CCWWGG 2 cut(s) 152, 1122
Eco24I GRGCYC 3 cut(s) 124, 337, 790
Eco31I GGTCTC 1 cut(s) 469
Eco47I GGWCC 1 cut(s) 149
Eco53kI GAGCTC 2 cut(s) 122, 788
Eco57I CTGAAG 2 cut(s) 213, 722
EcoICRI GAGCTC 2 cut(s) 122, 788
EcoRII CCWGG 4 cut(s) 587, 740, 790, 916
EcoT14I CCWWGG 2 cut(s) 152, 1122
EcoT38I GRGCYC 3 cut(s) 124, 337, 790
ErhI CCWWGG 2 cut(s) 152, 1122
FaeI CATG 7 cut(s) 20, 281, 345, 668, 1126, 1247, 1466
FaqI GGGAC 3 cut(s) 231, 244, 436
FatI CATG 7 cut(s) 16, 277, 341, 664, 1122, 1243, 1462
FbaI TGATCA 1 cut(s) 126
Fnu4HI GCNGC 6 cut(s) 206, 499, 888, 900, 1425, 1437
FokI GGATG 1 cut(s) 998
FriOI GRGCYC 3 cut(s) 124, 337, 790
Fsp4HI GCNGC 6 cut(s) 206, 499, 888, 900, 1425, 1437
FspBI CTAG 5 cut(s) 75, 183, 975, 1139, 1304
GlaI GCGC 2 cut(s) 1266, 1309
GluI GCNGC 6 cut(s) 206, 499, 888, 900, 1425, 1437
GsuI CTGGAG 2 cut(s) 258, 1115
HaeIII GGCC 3 cut(s) 157, 335, 350
HapII CCGG 1 cut(s) 1338
HhaI GCGC 2 cut(s) 1267, 1310
Hin1II CATG 7 cut(s) 20, 281, 345, 668, 1126, 1247, 1466
Hin6I GCGC 2 cut(s) 1265, 1308
HinP1I GCGC 2 cut(s) 1265, 1308
HincII GTYRAC 1 cut(s) 448
HindII GTYRAC 1 cut(s) 448
HindIII AAGCTT 3 cut(s) 578, 1128, 1281
HinfI GANTC 6 cut(s) 10, 23, 728, 1249, 1256, 1458
HpaII CCGG 1 cut(s) 1338
HphI GGTGA 1 cut(s) 1178
Hpy166II GTNNAC 5 cut(s) 188, 395, 448, 1109, 1332
Hpy188I TCNGA 6 cut(s) 126, 677, 685, 702, 832, 1191
Hpy188III TCNNGA 5 cut(s) 237, 719, 1139, 1220, 1253
Hpy8I GTNNAC 5 cut(s) 188, 395, 448, 1109, 1332
Hpy99I CGWCG 1 cut(s) 520
HpyAV CCTTC 4 cut(s) 78, 340, 697, 786
HpyCH4III ACNGT 4 cut(s) 520, 550, 630, 993
HpyCH4IV ACGT 1 cut(s) 1216
HpyF10VI GCNNNNNNNGC 6 cut(s) 248, 655, 896, 905, 1433, 1445
HpyF3I CTNAG 6 cut(s) 134, 282, 720, 753, 965, 1067
HpySE526I ACGT 1 cut(s) 1216
Hsp92II CATG 7 cut(s) 20, 281, 345, 668, 1126, 1247, 1466
HspAI GCGC 2 cut(s) 1265, 1308
Ksp22I TGATCA 1 cut(s) 126
Kzo9I GATC 6 cut(s) 126, 604, 715, 827, 1117, 1186
LmnI GCTCC 7 cut(s) 202, 239, 538, 793, 1058, 1204, 1433
Lsp1109I GCAGC 5 cut(s) 485, 899, 911, 1411, 1423
LweI GCATC 2 cut(s) 496, 976
MaeI CTAG 5 cut(s) 75, 183, 975, 1139, 1304
MaeII ACGT 1 cut(s) 1216
MaeIII GTNAC 1 cut(s) 928
MalI GATC 6 cut(s) 128, 606, 717, 829, 1119, 1188
MboI GATC 6 cut(s) 126, 604, 715, 827, 1117, 1186
MboII GAAGA 8 cut(s) 32, 52, 60, 150, 329, 349, 380, 653
MfeI CAATTG 1 cut(s) 27
MflI RGATCY 1 cut(s) 1186
MhlI GDGCHC 4 cut(s) 124, 337, 790, 971
MluCI AATT 5 cut(s) 27, 273, 1074, 1100, 1410
MmeI TCCRAC 1 cut(s) 1015
MseI TTAA 1 cut(s) 522
MspI CCGG 1 cut(s) 1338
MspR9I CCNGG 4 cut(s) 589, 742, 792, 918
MunI CAATTG 1 cut(s) 27
MvaI CCWGG 4 cut(s) 589, 742, 792, 918
MvnI CGCG 1 cut(s) 1267
MwoI GCNNNNNNNGC 6 cut(s) 248, 655, 896, 905, 1433, 1445
NcoI CCATGG 1 cut(s) 1122
NdeII GATC 6 cut(s) 126, 604, 715, 827, 1117, 1186
NlaIII CATG 7 cut(s) 20, 281, 345, 668, 1126, 1247, 1466
NlaIV GGNNCC 5 cut(s) 204, 335, 562, 871, 1200
PfeI GAWTC 6 cut(s) 10, 23, 728, 1249, 1256, 1458
PflMI CCANNNNNTGG 1 cut(s) 101
PfoI TCCNGGA 1 cut(s) 790
PkrI GCNGC 6 cut(s) 207, 500, 889, 901, 1426, 1438
PsiI TTATAA 1 cut(s) 690
Psp124BI GAGCTC 2 cut(s) 124, 790
Psp6I CCWGG 4 cut(s) 587, 740, 790, 916
PspGI CCWGG 4 cut(s) 587, 740, 790, 916
PspN4I GGNNCC 5 cut(s) 204, 335, 562, 871, 1200
PspOMI GGGCCC 1 cut(s) 333
PspPI GGNCC 3 cut(s) 149, 333, 334
PsuI RGATCY 1 cut(s) 1186
RsaI GTAC 1 cut(s) 1386
RsaNI GTAC 1 cut(s) 1385
SacI GAGCTC 2 cut(s) 124, 790
SaqAI TTAA 1 cut(s) 522
SatI GCNGC 6 cut(s) 206, 499, 888, 900, 1425, 1437
Sau3AI GATC 6 cut(s) 126, 604, 715, 827, 1117, 1186
Sau96I GGNCC 3 cut(s) 149, 333, 334
ScaI AGTACT 1 cut(s) 1386
ScrFI CCNGG 4 cut(s) 589, 742, 792, 918
SduI GDGCHC 4 cut(s) 124, 337, 790, 971
SfaNI GCATC 2 cut(s) 496, 976
SinI GGWCC 1 cut(s) 149
SmlI CTYRAG 1 cut(s) 1295
SmoI CTYRAG 1 cut(s) 1295
SpeI ACTAGT 1 cut(s) 182
Sse9I AATT 5 cut(s) 27, 273, 1074, 1100, 1410
SsiI CCGC 1 cut(s) 206
SspMI CTAG 5 cut(s) 75, 183, 975, 1139, 1304
SstI GAGCTC 2 cut(s) 124, 790
StyD4I CCNGG 4 cut(s) 587, 740, 790, 916
StyI CCWWGG 2 cut(s) 152, 1122
TaaI ACNGT 4 cut(s) 520, 550, 630, 993
TaiI ACGT 1 cut(s) 1219
TaqI TCGA 1 cut(s) 258
TaqII GACCGA 1 cut(s) 794
TasI AATT 5 cut(s) 27, 273, 1074, 1100, 1410
TatI WGTACW 1 cut(s) 1384
TauI GCSGC 1 cut(s) 208
TfiI GAWTC 6 cut(s) 10, 23, 728, 1249, 1256, 1458
Tru1I TTAA 1 cut(s) 522
Tru9I TTAA 1 cut(s) 522
TscAI CASTG 4 cut(s) 880, 1087, 1158, 1185
TseI GCWGC 5 cut(s) 498, 887, 899, 1424, 1436
TspDTI ATGAA 6 cut(s) 33, 53, 266, 330, 653, 1338
TspGWI ACGGA 1 cut(s) 1446
TspRI CASTG 4 cut(s) 880, 1087, 1158, 1185
Van91I CCANNNNNTGG 1 cut(s) 101
VpaK11BI GGWCC 1 cut(s) 149
XapI RAATTY 1 cut(s) 1074
XbaI TCTAGA 1 cut(s) 1138
XcmI CCANNNNNNNNNTGG 1 cut(s) 63
XspI CTAG 5 cut(s) 75, 183, 975, 1139, 1304
ZrmI AGTACT 1 cut(s) 1386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.