Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0002338

Physical Location & Seq

Genomic Coordinates Forward (+)

19120932 .. 19121911

Gene Structure 980 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG146300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGCCGGCTTCAGTTCACCATCATCCTGCCTTTGCAAGCTCCTTCCTGTTCCCCTGCTCACATGGGTATCCTAGTCCAAGAAGGCAATCTCCACCAACTGGGTTGCACTTGAACAGAGCTCTGATCAAACTGAGAAGACCAAGAGGTCCAAGGCCAATGACTTTTGGGAGCATTGATACTAGTGAACCTGAAGTTGGGGAGCGGCTTTATCTGGGACTGGACTTTGGGACTTCTGGAGCGAGGTTTGCCCTTATCGATAAACGAGGGATAATTCATGCTGAGGGAAAGAGAGAATACCCTCCTTTTATGAAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0006793 GO:0006796 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019150 GO:0019200 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044262 GO:0044424 GO:0044444 GO:0044464 GO:0046835 GO:0071704 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FGGY_C FGGY_N

Protein Analysis

105

Amino Acids

11.75

Weight (kDa)

10.11

Isoelectric Point (pI)

58.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002338)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21370 AT2G21370 AT2G21370 AT2G21370
fragaria_vesca	FvH4_2g10090 FvH4_2g10090 FvH4_2g10090 FvH4_2g10090
malus_domestica	MD10G1065800.v1.1
prunus_persica	Prupe.8G087700_v2.0.a1 Prupe.8G087700_v2.0.a1
pyrus_communis	pycom10g05120
rosa_chinensis	RchiOBHm_Chr3g0496591 RchiOBHm_Chr4g0423361 RchiOBHm_Chr6g0267041
rosa_laevigata	RLG00000003987 RLG00000014047 RLG00000018837 RLG00000028975
rosa_multiflora	Rmu_sc0013804.1_g000007 Rmu_sc0030781.1_g000001 Rmu_sc0033156.1_g000001 Rmu_sc0033555.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147730 Rroxscaffold_2G00147740 Rroxscaffold_7G00201210
rosa_rugosa	Rorug01G0215500 Rorug02G0305900
rosa_samantha	Rh2BG290800 Rh2BG290900 Rh2DG285900 Rh3AG330100 Rh3CG362900 Rh3DG366000 Rh5CG284800 Rh6CG099100 Rh6CG146300 Rh6CG146400 Rh7BG254600 Rh7BG468800
rosa_wichuraiana	Rw3G028900 Rw6G013010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	144
AccB7I	CCANNNNNTGG	1 cut(s)	98
AccBSI	CCGCTC	1 cut(s)	202
AciI	CCGC	1 cut(s)	202
AcuI	CTGAAG	1 cut(s)	210
AfiI	CCNNNNNNNGG	2 cut(s)	98, 194
AgsI	TTSAA	1 cut(s)	112
AhlI	ACTAGT	1 cut(s)	179
AjuI	GAANNNNNNNTTGG	2 cut(s)	177, 209
AluBI	AGCT	2 cut(s)	39, 119
AluI	AGCT	2 cut(s)	39, 119
Alw21I	GWGCWC	1 cut(s)	121
AoxI	GGCC	1 cut(s)	152
AspS9I	GGNCC	1 cut(s)	146
AsuHPI	GGTGA	1 cut(s)	8
AvaII	GGWCC	1 cut(s)	146
BaeI	ACNNNNGTAYC	2 cut(s)	50, 83
BanII	GRGCYC	1 cut(s)	121
BbsI	GAAGAC	1 cut(s)	142
Bbv12I	GWGCWC	1 cut(s)	121
BbvCI	CCTCAGC	1 cut(s)	279
BccI	CCATC	1 cut(s)	27
BciVI	GTATCC	1 cut(s)	78
BclI	TGATCA	1 cut(s)	123
BcuI	ACTAGT	1 cut(s)	179
BfaI	CTAG	2 cut(s)	72, 180
BfuI	GTATCC	1 cut(s)	78
BisI	GCNGC	1 cut(s)	203
BlsI	GCNGC	1 cut(s)	204
Bme18I	GGWCC	1 cut(s)	146
BmgT120I	GGNCC	1 cut(s)	146
BmrI	ACTGGG	1 cut(s)	108
BmuI	ACTGGG	1 cut(s)	108
BpiI	GAAGAC	1 cut(s)	142
BpmI	CTGGAG	1 cut(s)	255
Bpu10I	CCTNAGC	1 cut(s)	279
Bsa29I	ATCGAT	1 cut(s)	255
BsaJI	CCNNGG	1 cut(s)	149
Bsc4I	CCNNNNNNNGG	2 cut(s)	98, 194
Bse118I	RCCGGY	1 cut(s)	4
Bse1I	ACTGG	2 cut(s)	103, 222
BseCI	ATCGAT	1 cut(s)	255
BseDI	CCNNGG	1 cut(s)	149
BseGI	GGATG	1 cut(s)	22
BseLI	CCNNNNNNNGG	2 cut(s)	98, 194
BseMII	CTCAG	2 cut(s)	122, 270
BseNI	ACTGG	2 cut(s)	103, 222
BshFI	GGCC	1 cut(s)	154
BshVI	ATCGAT	1 cut(s)	255
BsiHKAI	GWGCWC	1 cut(s)	121
BsiSI	CCGG	1 cut(s)	5
BslFI	GGGAC	2 cut(s)	228, 241
BslI	CCNNNNNNNGG	2 cut(s)	98, 194
BsmFI	GGGAC	2 cut(s)	228, 241
BsnI	GGCC	1 cut(s)	154
Bsp1286I	GDGCHC	1 cut(s)	121
Bsp143I	GATC	1 cut(s)	123
BspACI	CCGC	1 cut(s)	202
BspANI	GGCC	1 cut(s)	154
BspCNI	CTCAG	2 cut(s)	123, 271
BspDI	ATCGAT	1 cut(s)	255
BsrBI	CCGCTC	1 cut(s)	202
BsrFI	RCCGGY	1 cut(s)	4
BsrI	ACTGG	2 cut(s)	103, 222
BssAI	RCCGGY	1 cut(s)	4
BssECI	CCNNGG	1 cut(s)	149
BssMI	GATC	1 cut(s)	123
BssT1I	CCWWGG	1 cut(s)	149
BstC8I	GCNNGC	2 cut(s)	6, 37
BstDEI	CTNAG	2 cut(s)	131, 279
BstF5I	GGATG	1 cut(s)	22
BstKTI	GATC	1 cut(s)	126
BstMBI	GATC	1 cut(s)	123
BstMWI	GCNNNNNNNGC	1 cut(s)	245
BstV2I	GAAGAC	1 cut(s)	142
Bsu15I	ATCGAT	1 cut(s)	255
BsuI	GTATCC	1 cut(s)	78
BsuRI	GGCC	1 cut(s)	154
BsuTUI	ATCGAT	1 cut(s)	255
BtsCI	GGATG	1 cut(s)	22
Cac8I	GCNNGC	2 cut(s)	6, 37
Cfr10I	RCCGGY	1 cut(s)	4
Cfr13I	GGNCC	1 cut(s)	146
ClaI	ATCGAT	1 cut(s)	255
CviAII	CATG	2 cut(s)	62, 275
CviJI	RGCY	5 cut(s)	8, 39, 119, 154, 205
CviKI_1	RGCY	5 cut(s)	8, 39, 119, 154, 205
DdeI	CTNAG	2 cut(s)	131, 279
DpnI	GATC	1 cut(s)	125
DpnII	GATC	1 cut(s)	123
DrdI	GACNNNNNNGTC	1 cut(s)	144
DseDI	GACNNNNNNGTC	1 cut(s)	144
Ecl136II	GAGCTC	1 cut(s)	119
Eco130I	CCWWGG	1 cut(s)	149
Eco24I	GRGCYC	1 cut(s)	121
Eco47I	GGWCC	1 cut(s)	146
Eco53kI	GAGCTC	1 cut(s)	119
Eco57I	CTGAAG	1 cut(s)	210
EcoICRI	GAGCTC	1 cut(s)	119
EcoT14I	CCWWGG	1 cut(s)	149
EcoT38I	GRGCYC	1 cut(s)	121
ErhI	CCWWGG	1 cut(s)	149
FaeI	CATG	2 cut(s)	65, 278
FaiI	YATR	3 cut(s)	63, 276, 308
FaqI	GGGAC	2 cut(s)	228, 241
FatI	CATG	2 cut(s)	61, 274
FbaI	TGATCA	1 cut(s)	123
Fnu4HI	GCNGC	1 cut(s)	203
FokI	GGATG	1 cut(s)	9
FriOI	GRGCYC	1 cut(s)	121
Fsp4HI	GCNGC	1 cut(s)	203
FspBI	CTAG	2 cut(s)	72, 180
GluI	GCNGC	1 cut(s)	203
GsuI	CTGGAG	1 cut(s)	255
HaeIII	GGCC	1 cut(s)	154
HapII	CCGG	1 cut(s)	5
Hin1II	CATG	2 cut(s)	65, 278
HpaII	CCGG	1 cut(s)	5
HphI	GGTGA	1 cut(s)	8
Hpy166II	GTNNAC	2 cut(s)	16, 185
Hpy188I	TCNGA	1 cut(s)	123
Hpy188III	TCNNGA	1 cut(s)	234
Hpy8I	GTNNAC	2 cut(s)	16, 185
HpyAV	CCTTC	2 cut(s)	52, 75
HpyCH4V	TGCA	2 cut(s)	35, 106
HpyF10VI	GCNNNNNNNGC	1 cut(s)	245
HpyF3I	CTNAG	2 cut(s)	131, 279
Hsp92II	CATG	2 cut(s)	65, 278
KroI	GCCGGC	1 cut(s)	4
KroNI	GCCGGC	1 cut(s)	6
Ksp22I	TGATCA	1 cut(s)	123
Kzo9I	GATC	1 cut(s)	123
LmnI	GCTCC	4 cut(s)	44, 168, 199, 236
LpnPI	CCDG	9 cut(s)	18, 39, 59, 67, 84, 197, 201, 203, 219
MaeI	CTAG	2 cut(s)	72, 180
MalI	GATC	1 cut(s)	125
MbiI	CCGCTC	1 cut(s)	202
MboI	GATC	1 cut(s)	123
MboII	GAAGA	1 cut(s)	147
MhlI	GDGCHC	1 cut(s)	121
MluCI	AATT	1 cut(s)	270
MnlI	CCTC	5 cut(s)	137, 234, 257, 274, 309
MroNI	GCCGGC	1 cut(s)	4
MspI	CCGG	1 cut(s)	5
MwoI	GCNNNNNNNGC	1 cut(s)	245
NaeI	GCCGGC	1 cut(s)	6
NdeII	GATC	1 cut(s)	123
NgoMIV	GCCGGC	1 cut(s)	4
NlaIII	CATG	2 cut(s)	65, 278
PdiI	GCCGGC	1 cut(s)	6
PflMI	CCANNNNNTGG	1 cut(s)	98
PkrI	GCNGC	1 cut(s)	204
Psp124BI	GAGCTC	1 cut(s)	121
PspPI	GGNCC	1 cut(s)	146
SacI	GAGCTC	1 cut(s)	121
SatI	GCNGC	1 cut(s)	203
Sau3AI	GATC	1 cut(s)	123
Sau96I	GGNCC	1 cut(s)	146
SduI	GDGCHC	1 cut(s)	121
SetI	ASST	5 cut(s)	41, 121, 148, 190, 245
SinI	GGWCC	1 cut(s)	146
SpeI	ACTAGT	1 cut(s)	179
Sse9I	AATT	1 cut(s)	270
SsiI	CCGC	1 cut(s)	202
SspMI	CTAG	2 cut(s)	72, 180
SstI	GAGCTC	1 cut(s)	121
StyI	CCWWGG	1 cut(s)	149
TaqI	TCGA	1 cut(s)	255
TasI	AATT	1 cut(s)	270
TauI	GCSGC	1 cut(s)	205
TspDTI	ATGAA	1 cut(s)	263
Van91I	CCANNNNNTGG	1 cut(s)	98
VpaK11BI	GGWCC	1 cut(s)	146
XspI	CTAG	2 cut(s)	72, 180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.