Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0002338

Physical Location & Seq

Genomic Coordinates Reverse (-)

12076034 .. 12080655

Gene Structure 4622 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G087700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1488 bp

ATGCTTGCCTCTGTTTACAATCCTGCAATCTCCTTTCTGTTTCCATGGTCGTCATCCCCTAAACATGGGTTGTTTAGTTCATGGAAGCAATTTTCAGGAACTGGGTTGTTTTTGTATGATAATGCGAACAAACTAACAAAAAGAAGAGGTCCAAGACCAATACCAATGGCTTTTGGAAGCAACACAGATGAGGCTGAAGTGGGGGTTTTACTTGGGGAGAGGCTTTATCTTGGAATGGACTTTGGTACTTCAGGAGCGAGGTTTGCGCTCATCGACAAGCGAGGGACAATTCATGCTGAGGGAAAGAGAGAATATCCTCATTTTATGAGTGAAGAAAAGGTGGATTGGGCGCGTTCATGGAAAGCGACACTCTTCTCACTACTTGAAGACATTCCATCTCATCTCCGCAAGCTAGTTGCTTCCATTTCCATTGATGGGACTTCTGCAACTACTCTCATTGTAGACAGCAACACAGGGGAACCATTATGGAGACCTCTCCTATATAACGAGAGTTGCCCTGATGCTTTACCAACAGTTAAGTCTATAGCTCCTCCAAACCATACAGTCTGCTCTGGTTCCTCCACTCTGTGCAAGCTTGTCTCATGGTGGGAGAATGATGATTCAAATAAAAAATCTGCACTTTTGTTGCACCAAGCAGATTGGCTTTTGTGGCTTCTTCATGGAAAGCTTGGAGTGTCTGATTATAATAATGCCCTGAAGGTTGGTTATGATCCTGAGCTTGAGTCCTATCCACCTTGGCTCCTCTCTCAGCCATATTCACAACTTTTACCTTCTGTCAGAGCTCCTGGAACTTCAATTGGTCATTTGAAAGAGGATATAAGATCAGATTTTGGTTTCCCAAATGATTGTGTTGTATGCGCAGGAACCACTGATAGTATAGCAGCCTTTCTAGCAGCTCGTGCAACACAACCTGGGAAAGCTGTAACTTCTTTGGGTTCGACACTTGCCATAAAACTGTTGAGCACTACTAGGATTGAAGATGCACGGTTTGGGGTGTATAGTCATCGCCTTGATGATAAGTGGCTTGTTGGAGGGGCTTCAAATACTGGTGGAGCAGTTCTTAGACAAATTTTTACTGATGAGCAACTGGTGAAGTTGAGTGAACAAATTAATCCCATGGAAGCCTCTCTTCTAGACTACTACCCGCTGCAAACCATTGGCGAGAGATTTCCAGTGGCAGATCCGAATATGGCTCCTAGGTTAGATCCTCGTCCAGAAAGTGAGGTTGAGTTTTTGCATGGGATTCTTGAATCCATTGCACGCATAGAGGCAAAAGCTTACAGCTTGCTGAAGGATCTAGGAGCAACTCAAGTTGATGAAGTGTTCACAGCTGGGGGTGGCGCGAAAAATGAGAAATGGACAAAGATAAGAGAGAGGGTACTTGGCTTACCTGTGAGTCGTGCAACTCAAACAGAGGCTGCTTATGGAGCTGCTTTATTGGCGTTGAGGGGAACTGATGAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0006793 GO:0006796 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019150 GO:0019200 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044262 GO:0044424 GO:0044444 GO:0044464 GO:0046835 GO:0071704 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FGGY_C FGGY_N

Protein Analysis

496

Amino Acids

54.33

Weight (kDa)

5.99

Isoelectric Point (pI)

33.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002338)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21370 AT2G21370 AT2G21370 AT2G21370
fragaria_vesca	FvH4_2g10090 FvH4_2g10090 FvH4_2g10090 FvH4_2g10090
malus_domestica	MD10G1065800.v1.1
prunus_persica	Prupe.8G087700_v2.0.a1 Prupe.8G087700_v2.0.a1
pyrus_communis	pycom10g05120
rosa_chinensis	RchiOBHm_Chr3g0496591 RchiOBHm_Chr4g0423361 RchiOBHm_Chr6g0267041
rosa_laevigata	RLG00000003987 RLG00000014047 RLG00000018837 RLG00000028975
rosa_multiflora	Rmu_sc0013804.1_g000007 Rmu_sc0030781.1_g000001 Rmu_sc0033156.1_g000001 Rmu_sc0033555.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147730 Rroxscaffold_2G00147740 Rroxscaffold_7G00201210
rosa_rugosa	Rorug01G0215500 Rorug02G0305900
rosa_samantha	Rh2BG290800 Rh2BG290900 Rh2DG285900 Rh3AG330100 Rh3CG362900 Rh3DG366000 Rh5CG284800 Rh6CG099100 Rh6CG146300 Rh6CG146400 Rh7BG254600 Rh7BG468800
rosa_wichuraiana	Rw3G028900 Rw6G013010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	705
Acc16I	TGCGCA	1 cut(s)	880
AccI	GTMKAC	1 cut(s)	462
AccII	CGCG	2 cut(s)	352, 1364
AciI	CCGC	2 cut(s)	406, 1166
AclWI	GGATC	4 cut(s)	725, 1196, 1220, 1323
AcsI	RAATTY	1 cut(s)	1089
AcuI	CTGAAG	4 cut(s)	216, 234, 737, 1331
AdeI	CACNNNGTG	1 cut(s)	588
AfaI	GTAC	2 cut(s)	247, 1401
AfiI	CCNNNNNNNGG	2 cut(s)	65, 435
AgsI	TTSAA	7 cut(s)	386, 624, 816, 829, 998, 1062, 1271
AjnI	CCWGG	2 cut(s)	805, 931
Alw21I	GWGCWC	2 cut(s)	805, 986
Alw26I	GTCTC	2 cut(s)	484, 604
AlwI	GGATC	4 cut(s)	725, 1196, 1220, 1323
AlwNI	CAGNNNCTG	2 cut(s)	101, 1439
ApeKI	GCWGC	5 cut(s)	902, 914, 1168, 1439, 1451
ApoI	RAATTY	1 cut(s)	1089
AseI	ATTAAT	1 cut(s)	1131
Asp700I	GAANNNNTTC	1 cut(s)	390
AspA2I	CCTAGG	1 cut(s)	1217
AspLEI	GCGC	4 cut(s)	268, 352, 881, 1364
AspS9I	GGNCC	1 cut(s)	149
AsuHPI	GGTGA	1 cut(s)	1123
AvaII	GGWCC	1 cut(s)	149
AvrII	CCTAGG	1 cut(s)	1217
BanII	GRGCYC	1 cut(s)	805
BauI	CACGAG	1 cut(s)	918
BbsI	GAAGAC	1 cut(s)	393
Bbv12I	GWGCWC	2 cut(s)	805, 986
BbvCI	CCTCAGC	1 cut(s)	297
BbvI	GCAGC	5 cut(s)	914, 926, 1155, 1426, 1438
BccI	CCATC	2 cut(s)	403, 428
BciT130I	CCWGG	2 cut(s)	807, 933
BcoDI	GTCTC	2 cut(s)	484, 604
BfaI	CTAG	6 cut(s)	413, 911, 990, 1154, 1218, 1319
BfmI	CTRYAG	1 cut(s)	543
BisI	GCNGC	5 cut(s)	903, 915, 1169, 1440, 1452
BlnI	CCTAGG	1 cut(s)	1217
BlsI	GCNGC	5 cut(s)	904, 916, 1170, 1441, 1453
Bme1390I	CCNGG	2 cut(s)	807, 933
Bme18I	GGWCC	1 cut(s)	149
BmgT120I	GGNCC	1 cut(s)	149
BmiI	GGNNCC	5 cut(s)	480, 577, 761, 886, 1215
BmrFI	CCNGG	2 cut(s)	807, 933
BmrI	ACTGGG	1 cut(s)	111
BmsI	GCATC	2 cut(s)	511, 991
BmuI	ACTGGG	1 cut(s)	111
BpiI	GAAGAC	1 cut(s)	393
Bpu10I	CCTNAGC	2 cut(s)	297, 735
BpuEI	CTTGAG	2 cut(s)	761, 1314
BsaI	GGTCTC	1 cut(s)	484
BsaJI	CCNNGG	5 cut(s)	44, 755, 932, 1137, 1217
BsaXI	ACNNNNNCTCC	2 cut(s)	744, 774
Bsc4I	CCNNNNNNNGG	2 cut(s)	65, 435
Bse1I	ACTGG	4 cut(s)	106, 1072, 1113, 1193
Bse3DI	GCAATG	1 cut(s)	1275
BseBI	CCWGG	2 cut(s)	807, 933
BseDI	CCNNGG	5 cut(s)	44, 755, 932, 1137, 1217
BseGI	GGATG	1 cut(s)	53
BseLI	CCNNNNNNNGG	2 cut(s)	65, 435
BseMI	GCAATG	1 cut(s)	1275
BseMII	CTCAG	3 cut(s)	288, 726, 782
BseNI	ACTGG	4 cut(s)	106, 1072, 1113, 1193
BseRI	GAGGAG	2 cut(s)	540, 752
BseXI	GCAGC	5 cut(s)	914, 926, 1155, 1426, 1438
BseYI	CCCAGC	1 cut(s)	1352
BsgI	GTGCAG	1 cut(s)	621
Bsh1236I	CGCG	2 cut(s)	352, 1364
BsiHKAI	GWGCWC	2 cut(s)	805, 986
BslFI	GGGAC	2 cut(s)	298, 451
BslI	CCNNNNNNNGG	2 cut(s)	65, 435
BsmAI	GTCTC	2 cut(s)	484, 604
BsmFI	GGGAC	2 cut(s)	298, 451
Bso31I	GGTCTC	1 cut(s)	484
Bsp1286I	GDGCHC	2 cut(s)	805, 986
Bsp143I	GATC	5 cut(s)	730, 842, 1201, 1225, 1315
Bsp19I	CCATGG	2 cut(s)	44, 1137
BspACI	CCGC	2 cut(s)	406, 1166
BspCNI	CTCAG	3 cut(s)	289, 727, 781
BspFNI	CGCG	2 cut(s)	352, 1364
BspLI	GGNNCC	5 cut(s)	480, 577, 761, 886, 1215
BspPI	GGATC	4 cut(s)	725, 1196, 1220, 1323
BspTNI	GGTCTC	1 cut(s)	484
BsrDI	GCAATG	1 cut(s)	1275
BsrI	ACTGG	4 cut(s)	106, 1072, 1113, 1193
BssECI	CCNNGG	5 cut(s)	44, 755, 932, 1137, 1217
BssMI	GATC	5 cut(s)	730, 842, 1201, 1225, 1315
BssSI	CACGAG	1 cut(s)	918
BssT1I	CCWWGG	4 cut(s)	44, 755, 1137, 1217
Bst2BI	CACGAG	1 cut(s)	918
Bst2UI	CCWGG	2 cut(s)	807, 933
Bst4CI	ACNGT	4 cut(s)	535, 565, 978, 1008
Bst6I	CTCTTC	3 cut(s)	139, 377, 1155
BstAPI	GCANNNNNTGC	1 cut(s)	920
BstC8I	GCNNGC	5 cut(s)	6, 410, 593, 1282, 1307
BstDEI	CTNAG	4 cut(s)	297, 735, 768, 1082
BstDSI	CCRYGG	2 cut(s)	44, 1137
BstF5I	GGATG	1 cut(s)	53
BstFNI	CGCG	2 cut(s)	352, 1364
BstHHI	GCGC	4 cut(s)	268, 352, 881, 1364
BstKTI	GATC	5 cut(s)	733, 845, 1204, 1228, 1318
BstMAI	GTCTC	2 cut(s)	484, 604
BstMBI	GATC	5 cut(s)	730, 842, 1201, 1225, 1315
BstMWI	GCNNNNNNNGC	6 cut(s)	263, 670, 911, 920, 1448, 1460
BstNI	CCWGG	2 cut(s)	807, 933
BstSCI	CCNGG	2 cut(s)	805, 931
BstSFI	CTRYAG	1 cut(s)	543
BstUI	CGCG	2 cut(s)	352, 1364
BstV1I	GCAGC	5 cut(s)	914, 926, 1155, 1426, 1438
BstV2I	GAAGAC	1 cut(s)	393
BstX2I	RGATCY	3 cut(s)	1201, 1225, 1315
BstYI	RGATCY	3 cut(s)	1201, 1225, 1315
BtgI	CCRYGG	2 cut(s)	44, 1137
BtgZI	GCGATG	1 cut(s)	1010
BtsCI	GGATG	1 cut(s)	53
BtsIMutI	CAGTG	2 cut(s)	888, 1200
Cac8I	GCNNGC	5 cut(s)	6, 410, 593, 1282, 1307
CaiI	CAGNNNCTG	2 cut(s)	101, 1439
CfoI	GCGC	4 cut(s)	268, 352, 881, 1364
Cfr13I	GGNCC	1 cut(s)	149
Csp6I	GTAC	2 cut(s)	246, 1400
CviAII	CATG	9 cut(s)	45, 65, 81, 293, 357, 603, 680, 1138, 1259
CviQI	GTAC	2 cut(s)	246, 1400
DdeI	CTNAG	4 cut(s)	297, 735, 768, 1082
DpnI	GATC	5 cut(s)	732, 844, 1203, 1227, 1317
DpnII	GATC	5 cut(s)	730, 842, 1201, 1225, 1315
DraIII	CACNNNGTG	1 cut(s)	588
Eam1104I	CTCTTC	3 cut(s)	139, 377, 1155
EarI	CTCTTC	3 cut(s)	139, 377, 1155
Ecl136II	GAGCTC	1 cut(s)	803
Eco130I	CCWWGG	4 cut(s)	44, 755, 1137, 1217
Eco24I	GRGCYC	1 cut(s)	805
Eco31I	GGTCTC	1 cut(s)	484
Eco47I	GGWCC	1 cut(s)	149
Eco53kI	GAGCTC	1 cut(s)	803
Eco57I	CTGAAG	4 cut(s)	216, 234, 737, 1331
EcoICRI	GAGCTC	1 cut(s)	803
EcoRII	CCWGG	2 cut(s)	805, 931
EcoT14I	CCWWGG	4 cut(s)	44, 755, 1137, 1217
EcoT38I	GRGCYC	1 cut(s)	805
ErhI	CCWWGG	4 cut(s)	44, 755, 1137, 1217
FaeI	CATG	9 cut(s)	48, 68, 84, 296, 360, 606, 683, 1141, 1262
FalI	AAGNNNNNCTT	2 cut(s)	1134, 1166
FaqI	GGGAC	2 cut(s)	298, 451
FatI	CATG	9 cut(s)	44, 64, 80, 292, 356, 602, 679, 1137, 1258
FauI	CCCGC	1 cut(s)	1173
FblI	GTMKAC	1 cut(s)	462
Fnu4HI	GCNGC	5 cut(s)	903, 915, 1169, 1440, 1452
FokI	GGATG	1 cut(s)	40
FriOI	GRGCYC	1 cut(s)	805
Fsp4HI	GCNGC	5 cut(s)	903, 915, 1169, 1440, 1452
FspBI	CTAG	6 cut(s)	413, 911, 990, 1154, 1218, 1319
FspI	TGCGCA	1 cut(s)	880
GlaI	GCGC	4 cut(s)	267, 351, 880, 1363
GluI	GCNGC	5 cut(s)	903, 915, 1169, 1440, 1452
GsaI	CCCAGC	1 cut(s)	1356
HhaI	GCGC	4 cut(s)	268, 352, 881, 1364
Hin1II	CATG	9 cut(s)	48, 68, 84, 296, 360, 606, 683, 1141, 1262
Hin6I	GCGC	4 cut(s)	266, 350, 879, 1362
HinP1I	GCGC	4 cut(s)	266, 350, 879, 1362
HindIII	AAGCTT	3 cut(s)	593, 686, 1296
HinfI	GANTC	5 cut(s)	620, 743, 1264, 1271, 1417
HphI	GGTGA	1 cut(s)	1123
Hpy166II	GTNNAC	4 cut(s)	16, 463, 1124, 1347
Hpy188I	TCNGA	4 cut(s)	700, 800, 847, 1206
Hpy188III	TCNNGA	6 cut(s)	96, 252, 734, 1154, 1235, 1268
Hpy8I	GTNNAC	4 cut(s)	16, 463, 1124, 1347
HpyAV	CCTTC	3 cut(s)	712, 801, 1306
HpyCH4III	ACNGT	4 cut(s)	535, 565, 978, 1008
HpyF10VI	GCNNNNNNNGC	6 cut(s)	263, 670, 911, 920, 1448, 1460
HpyF3I	CTNAG	4 cut(s)	297, 735, 768, 1082
Hsp92II	CATG	9 cut(s)	48, 68, 84, 296, 360, 606, 683, 1141, 1262
HspAI	GCGC	4 cut(s)	266, 350, 879, 1362
Kzo9I	GATC	5 cut(s)	730, 842, 1201, 1225, 1315
LmnI	GCTCC	8 cut(s)	254, 553, 765, 808, 1073, 1219, 1322, 1448
Lsp1109I	GCAGC	5 cut(s)	914, 926, 1155, 1426, 1438
LweI	GCATC	2 cut(s)	511, 991
MaeI	CTAG	6 cut(s)	413, 911, 990, 1154, 1218, 1319
MaeIII	GTNAC	1 cut(s)	943
MalI	GATC	5 cut(s)	732, 844, 1203, 1227, 1317
MboI	GATC	5 cut(s)	730, 842, 1201, 1225, 1315
MboII	GAAGA	7 cut(s)	156, 344, 364, 398, 668, 1010, 1142
MfeI	CAATTG	1 cut(s)	816
MflI	RGATCY	3 cut(s)	1201, 1225, 1315
MhlI	GDGCHC	2 cut(s)	805, 986
MluCI	AATT	5 cut(s)	89, 288, 816, 1089, 1128
MlyI	GAGTC	2 cut(s)	752, 1426
MmeI	TCCRAC	1 cut(s)	1030
MroXI	GAANNNNTTC	1 cut(s)	390
MseI	TTAA	2 cut(s)	537, 1131
MspA1I	CMGCKG	2 cut(s)	1168, 1352
MspR9I	CCNGG	2 cut(s)	807, 933
MunI	CAATTG	1 cut(s)	816
MvaI	CCWGG	2 cut(s)	807, 933
MvnI	CGCG	2 cut(s)	352, 1364
MwoI	GCNNNNNNNGC	6 cut(s)	263, 670, 911, 920, 1448, 1460
NcoI	CCATGG	2 cut(s)	44, 1137
NdeII	GATC	5 cut(s)	730, 842, 1201, 1225, 1315
NlaIII	CATG	9 cut(s)	48, 68, 84, 296, 360, 606, 683, 1141, 1262
NlaIV	GGNNCC	5 cut(s)	480, 577, 761, 886, 1215
NsbI	TGCGCA	1 cut(s)	880
PdmI	GAANNNNTTC	1 cut(s)	390
PfeI	GAWTC	3 cut(s)	620, 1264, 1271
PfoI	TCCNGGA	1 cut(s)	805
PkrI	GCNGC	5 cut(s)	904, 916, 1170, 1441, 1453
PleI	GAGTC	2 cut(s)	751, 1425
PpsI	GAGTC	2 cut(s)	751, 1425
PshBI	ATTAAT	1 cut(s)	1131
PsiI	TTATAA	1 cut(s)	705
Psp124BI	GAGCTC	1 cut(s)	805
Psp6I	CCWGG	2 cut(s)	805, 931
PspFI	CCCAGC	1 cut(s)	1352
PspGI	CCWGG	2 cut(s)	805, 931
PspN4I	GGNNCC	5 cut(s)	480, 577, 761, 886, 1215
PspPI	GGNCC	1 cut(s)	149
PstNI	CAGNNNCTG	2 cut(s)	101, 1439
PsuI	RGATCY	3 cut(s)	1201, 1225, 1315
PvuII	CAGCTG	1 cut(s)	1352
RsaI	GTAC	2 cut(s)	247, 1401
RsaNI	GTAC	2 cut(s)	246, 1400
SacI	GAGCTC	1 cut(s)	805
SaqAI	TTAA	2 cut(s)	537, 1131
SatI	GCNGC	5 cut(s)	903, 915, 1169, 1440, 1452
Sau3AI	GATC	5 cut(s)	730, 842, 1201, 1225, 1315
Sau96I	GGNCC	1 cut(s)	149
SchI	GAGTC	2 cut(s)	752, 1426
ScrFI	CCNGG	2 cut(s)	807, 933
SduI	GDGCHC	2 cut(s)	805, 986
SfaNI	GCATC	2 cut(s)	511, 991
SfcI	CTRYAG	1 cut(s)	543
SinI	GGWCC	1 cut(s)	149
SmlI	CTYRAG	2 cut(s)	740, 1329
SmoI	CTYRAG	2 cut(s)	740, 1329
Sse9I	AATT	5 cut(s)	89, 288, 816, 1089, 1128
SsiI	CCGC	2 cut(s)	406, 1166
SspMI	CTAG	6 cut(s)	413, 911, 990, 1154, 1218, 1319
SstI	GAGCTC	1 cut(s)	805
StyD4I	CCNGG	2 cut(s)	805, 931
StyI	CCWWGG	4 cut(s)	44, 755, 1137, 1217
TaaI	ACNGT	4 cut(s)	535, 565, 978, 1008
TaqI	TCGA	2 cut(s)	273, 959
TasI	AATT	5 cut(s)	89, 288, 816, 1089, 1128
TfiI	GAWTC	3 cut(s)	620, 1264, 1271
Tru1I	TTAA	2 cut(s)	537, 1131
Tru9I	TTAA	2 cut(s)	537, 1131
TscAI	CASTG	2 cut(s)	895, 1200
TseI	GCWGC	5 cut(s)	902, 914, 1168, 1439, 1451
TspDTI	ATGAA	5 cut(s)	69, 281, 345, 668, 1353
TspRI	CASTG	2 cut(s)	895, 1200
VpaK11BI	GGWCC	1 cut(s)	149
VspI	ATTAAT	1 cut(s)	1131
XapI	RAATTY	1 cut(s)	1089
XbaI	TCTAGA	1 cut(s)	1153
XmaJI	CCTAGG	1 cut(s)	1217
XmiI	GTMKAC	1 cut(s)	462
XmnI	GAANNNNTTC	1 cut(s)	390
XspI	CTAG	6 cut(s)	413, 911, 990, 1154, 1218, 1319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.