Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002338

Physical Location & Seq

Genomic Coordinates Reverse (-)

85447328 .. 85447724

Gene Structure 397 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00147740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGGCTTTTGGGAGCAGTGGAGGTGAACCTGAAGTTGGGGAGCGGCTTTATCTGGGACTGGACTTTGGGACTTCTAGAGCGAGGTTTGCCGTTATCGATAAACGAGAGATAAGTCATGCTGAGGGAAAGAGAGAATACCCTCTTTTTATGGTAGCAATCAATCTTTGTGTTACTGAGGAGTATGTGTGTATGTGTGTGTATAACATAGATGATAGTGAAATGAAGAGGCTCCCTGATATGTGTTCTATCAATTCTAGTATCTCTGAGAGGTTGTCAACTGAGAATTTCTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0006793 GO:0006796 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019150 GO:0019200 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044262 GO:0044424 GO:0044444 GO:0044464 GO:0046835 GO:0071704 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FGGY_C FGGY_N

Protein Analysis

97

Amino Acids

10.94

Weight (kDa)

4.69

Isoelectric Point (pI)

47.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002338)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21370 AT2G21370 AT2G21370 AT2G21370
fragaria_vesca	FvH4_2g10090 FvH4_2g10090 FvH4_2g10090 FvH4_2g10090
malus_domestica	MD10G1065800.v1.1
prunus_persica	Prupe.8G087700_v2.0.a1 Prupe.8G087700_v2.0.a1
pyrus_communis	pycom10g05120
rosa_chinensis	RchiOBHm_Chr3g0496591 RchiOBHm_Chr4g0423361 RchiOBHm_Chr6g0267041
rosa_laevigata	RLG00000003987 RLG00000014047 RLG00000018837 RLG00000028975
rosa_multiflora	Rmu_sc0013804.1_g000007 Rmu_sc0030781.1_g000001 Rmu_sc0033156.1_g000001 Rmu_sc0033555.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147730 Rroxscaffold_2G00147740 Rroxscaffold_7G00201210
rosa_rugosa	Rorug01G0215500 Rorug02G0305900
rosa_samantha	Rh2BG290800 Rh2BG290900 Rh2DG285900 Rh3AG330100 Rh3CG362900 Rh3DG366000 Rh5CG284800 Rh6CG099100 Rh6CG146300 Rh6CG146400 Rh7BG254600 Rh7BG468800
rosa_wichuraiana	Rw3G028900 Rw6G013010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	43
AciI	CCGC	1 cut(s)	43
AcsI	RAATTY	1 cut(s)	283
AcuI	CTGAAG	1 cut(s)	51
AfiI	CCNNNNNNNGG	1 cut(s)	35
AjuI	GAANNNNNNNTTGG	2 cut(s)	18, 50
ApoI	RAATTY	1 cut(s)	283
AsuHPI	GGTGA	1 cut(s)	35
BbvCI	CCTCAGC	1 cut(s)	120
BceAI	ACGGC	1 cut(s)	74
BfaI	CTAG	2 cut(s)	75, 255
BisI	GCNGC	1 cut(s)	44
BlsI	GCNGC	1 cut(s)	45
BmiI	GGNNCC	1 cut(s)	230
Bpu10I	CCTNAGC	1 cut(s)	120
Bsa29I	ATCGAT	1 cut(s)	96
BsaXI	ACNNNNNCTCC	2 cut(s)	170, 200
Bsc4I	CCNNNNNNNGG	1 cut(s)	35
Bse1I	ACTGG	1 cut(s)	63
BseCI	ATCGAT	1 cut(s)	96
BseLI	CCNNNNNNNGG	1 cut(s)	35
BseMII	CTCAG	4 cut(s)	111, 165, 255, 270
BseNI	ACTGG	1 cut(s)	63
BseRI	GAGGAG	1 cut(s)	191
BshVI	ATCGAT	1 cut(s)	96
BslFI	GGGAC	2 cut(s)	69, 82
BslI	CCNNNNNNNGG	1 cut(s)	35
BsmFI	GGGAC	2 cut(s)	69, 82
BspACI	CCGC	1 cut(s)	43
BspCNI	CTCAG	4 cut(s)	112, 166, 256, 271
BspDI	ATCGAT	1 cut(s)	96
BspLI	GGNNCC	1 cut(s)	230
BsrBI	CCGCTC	1 cut(s)	43
BsrI	ACTGG	1 cut(s)	63
Bst6I	CTCTTC	1 cut(s)	218
BstDEI	CTNAG	4 cut(s)	120, 174, 264, 279
BstMWI	GCNNNNNNNGC	1 cut(s)	86
Bsu15I	ATCGAT	1 cut(s)	96
BsuTUI	ATCGAT	1 cut(s)	96
BtsI	GCAGTG	1 cut(s)	22
BtsIMutI	CAGTG	1 cut(s)	22
ClaI	ATCGAT	1 cut(s)	96
CviAII	CATG	1 cut(s)	116
CviJI	RGCY	3 cut(s)	5, 46, 229
CviKI_1	RGCY	3 cut(s)	5, 46, 229
DdeI	CTNAG	4 cut(s)	120, 174, 264, 279
Eam1104I	CTCTTC	1 cut(s)	218
EarI	CTCTTC	1 cut(s)	218
Eco57I	CTGAAG	1 cut(s)	51
FaeI	CATG	1 cut(s)	119
FaiI	YATR	8 cut(s)	117, 149, 183, 191, 201, 206, 239, 292
FaqI	GGGAC	2 cut(s)	69, 82
FatI	CATG	1 cut(s)	115
Fnu4HI	GCNGC	1 cut(s)	44
Fsp4HI	GCNGC	1 cut(s)	44
FspBI	CTAG	2 cut(s)	75, 255
GluI	GCNGC	1 cut(s)	44
Hin1II	CATG	1 cut(s)	119
HincII	GTYRAC	1 cut(s)	276
HindII	GTYRAC	1 cut(s)	276
HphI	GGTGA	1 cut(s)	35
Hpy166II	GTNNAC	2 cut(s)	26, 276
Hpy188I	TCNGA	1 cut(s)	265
Hpy188III	TCNNGA	1 cut(s)	75
Hpy8I	GTNNAC	2 cut(s)	26, 276
HpyF10VI	GCNNNNNNNGC	1 cut(s)	86
HpyF3I	CTNAG	4 cut(s)	120, 174, 264, 279
Hsp92II	CATG	1 cut(s)	119
LmnI	GCTCC	3 cut(s)	12, 40, 234
LpnPI	CCDG	4 cut(s)	38, 42, 44, 246
MaeI	CTAG	2 cut(s)	75, 255
MaeIII	GTNAC	1 cut(s)	169
MbiI	CCGCTC	1 cut(s)	43
MboII	GAAGA	1 cut(s)	235
MluCI	AATT	2 cut(s)	250, 283
MnlI	CCTC	7 cut(s)	14, 75, 115, 150, 169, 219, 261
MwoI	GCNNNNNNNGC	1 cut(s)	86
NlaIII	CATG	1 cut(s)	119
NlaIV	GGNNCC	1 cut(s)	230
PkrI	GCNGC	1 cut(s)	45
PspN4I	GGNNCC	1 cut(s)	230
SatI	GCNGC	1 cut(s)	44
SetI	ASST	4 cut(s)	25, 31, 86, 272
SgeI	CNNG	9 cut(s)	41, 65, 71, 87, 93, 116, 128, 245, 267
Sse9I	AATT	2 cut(s)	250, 283
SsiI	CCGC	1 cut(s)	43
SspMI	CTAG	2 cut(s)	75, 255
TaqI	TCGA	1 cut(s)	96
TasI	AATT	2 cut(s)	250, 283
TauI	GCSGC	1 cut(s)	46
TscAI	CASTG	1 cut(s)	22
TspDTI	ATGAA	1 cut(s)	236
TspRI	CASTG	1 cut(s)	22
XapI	RAATTY	1 cut(s)	283
XbaI	TCTAGA	1 cut(s)	74
XspI	CTAG	2 cut(s)	75, 255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.