Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0002338

Physical Location & Seq

Genomic Coordinates Reverse (-)

43846192 .. 43850128

Gene Structure 3937 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G028900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGTTCTTCAATTTTGTAACACGTTTCTTCTATTTTGTTGGTCTTCTGTGATTAAACTGAGAAGACTAAGAGGTCCAAGGCCAATGGCTTTTGGGAGCAGTGGAGGTGAACCTGAAGTTGGGGAGTGGCTTTATCTGGGACTGGACTTTGGGACTTCTGGAGCGAGGTTTGCCGTTATCGATAAACGAGGGATAATTCATGCTGAGGGAAAGAGAGAAACCCTCTTTTTATGTGAAGAAAAAATGGATTGGGCCCATTCATGGAAGGCCACACTCTTCTCACTTCTCGGAGACATTCCATCTCATCTTCGTAAACTGATTGCTTTCATTTCCATTGATGGGACTTCTACAACTACTCTCATTGTTGACAGCAACACAGGAGAGCCGTTATGGAGACCTTTCCTCTACAATGAGAGCTGCCCTGATGCTTTTCCAATGGTTAAATCCATTGCTCCTCCAAACCATACAATCTGCTCTGGTTCCTCTACTCTGTGCAAGCTTGTTGGTTATGATCCTGAGCTTGAATCCTATCCACCCTGGCTACTCTCTCAGCCCTATTCACAACTTTTACCTTCTGTTAGAGCTCCTGGAACTTCAATCGGTCATTTGAAAGAGGACATTAGATCGGATTTTGGTTTTCCAAGTGATTGTGCTGTATGCACAGGAACCATTGATAGTATAGCAGCTTTTTTAGCAGCTCGTGCAACACAACCTGGGAAAGCTGTAACTTCTTTGGGTTCAACACTTGCCATAAAACTGCTGAGCACTACTAGGATTGAGGATGCACGGTTTGGGGTGTATAGTCATCACCTTGATGATAAGTGGCTTGTTGGAGTTGCTTCAAATACTGGTGGAGCAGTTCTTAGACAAATTTTCACTGACAAGCAACTGGAGAAATTGAGTGAACAGATTGATCCCATGGAAGCAACAGTGTTTTCTGGTGGCAGGTTAAGCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0006793 GO:0006796 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019150 GO:0019200 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044262 GO:0044424 GO:0044444 GO:0044464 GO:0046835 GO:0071704 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FGGY_C FGGY_N

Protein Analysis

319

Amino Acids

34.92

Weight (kDa)

6.18

Isoelectric Point (pI)

37.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002338)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21370 AT2G21370 AT2G21370 AT2G21370
fragaria_vesca	FvH4_2g10090 FvH4_2g10090 FvH4_2g10090 FvH4_2g10090
malus_domestica	MD10G1065800.v1.1
prunus_persica	Prupe.8G087700_v2.0.a1 Prupe.8G087700_v2.0.a1
pyrus_communis	pycom10g05120
rosa_chinensis	RchiOBHm_Chr3g0496591 RchiOBHm_Chr4g0423361 RchiOBHm_Chr6g0267041
rosa_laevigata	RLG00000003987 RLG00000014047 RLG00000018837 RLG00000028975
rosa_multiflora	Rmu_sc0013804.1_g000007 Rmu_sc0030781.1_g000001 Rmu_sc0033156.1_g000001 Rmu_sc0033555.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147730 Rroxscaffold_2G00147740 Rroxscaffold_7G00201210
rosa_rugosa	Rorug01G0215500 Rorug02G0305900
rosa_samantha	Rh2BG290800 Rh2BG290900 Rh2DG285900 Rh3AG330100 Rh3CG362900 Rh3DG366000 Rh5CG284800 Rh6CG099100 Rh6CG146300 Rh6CG146400 Rh7BG254600 Rh7BG468800
rosa_wichuraiana	Rw3G028900 Rw6G013010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	72
Acc36I	ACCTGC	1 cut(s)	936
AclWI	GGATC	2 cut(s)	506, 908
AcsI	RAATTY	1 cut(s)	870
AcuI	CTGAAG	1 cut(s)	135
AfiI	CCNNNNNNNGG	3 cut(s)	119, 261, 339
AflIII	ACRYGT	1 cut(s)	21
AgsI	TTSAA	6 cut(s)	11, 524, 597, 610, 741, 843
AjnI	CCWGG	3 cut(s)	536, 586, 712
AjuI	GAANNNNNNNTTGG	2 cut(s)	102, 134
AluBI	AGCT	8 cut(s)	417, 499, 520, 584, 686, 698, 722, 954
AluI	AGCT	8 cut(s)	417, 499, 520, 584, 686, 698, 722, 954
Alw21I	GWGCWC	2 cut(s)	586, 767
Alw26I	GTCTC	2 cut(s)	285, 388
AlwI	GGATC	2 cut(s)	506, 908
AoxI	GGCC	3 cut(s)	80, 252, 267
ApaI	GGGCCC	1 cut(s)	256
ApeKI	GCWGC	3 cut(s)	417, 683, 695
ApoI	RAATTY	1 cut(s)	870
AspS9I	GGNCC	3 cut(s)	74, 252, 253
AsuHPI	GGTGA	2 cut(s)	119, 800
AvaII	GGWCC	1 cut(s)	74
BaeGI	GKGCMC	1 cut(s)	256
BanII	GRGCYC	2 cut(s)	256, 586
BauI	CACGAG	1 cut(s)	699
BbsI	GAAGAC	2 cut(s)	36, 70
Bbv12I	GWGCWC	2 cut(s)	586, 767
BbvCI	CCTCAGC	1 cut(s)	204
BbvI	GCAGC	3 cut(s)	404, 695, 707
BccI	CCATC	2 cut(s)	307, 332
BceAI	ACGGC	2 cut(s)	158, 370
BciT130I	CCWGG	3 cut(s)	538, 588, 714
BcoDI	GTCTC	2 cut(s)	285, 388
BfaI	CTAG	1 cut(s)	771
BfuAI	ACCTGC	1 cut(s)	936
BisI	GCNGC	3 cut(s)	418, 684, 696
BlpI	GCTNAGC	1 cut(s)	761
BlsI	GCNGC	3 cut(s)	419, 685, 697
Bme1390I	CCNGG	3 cut(s)	538, 588, 714
Bme18I	GGWCC	1 cut(s)	74
BmgT120I	GGNCC	3 cut(s)	74, 252, 253
BmiI	GGNNCC	3 cut(s)	254, 481, 667
BmrFI	CCNGG	3 cut(s)	538, 588, 714
BmsI	GCATC	2 cut(s)	415, 772
BpiI	GAAGAC	2 cut(s)	36, 70
BplI	GAGNNNNNCTC	2 cut(s)	207, 239
BpmI	CTGGAG	2 cut(s)	180, 911
Bpu10I	CCTNAGC	2 cut(s)	204, 516
Bpu1102I	GCTNAGC	1 cut(s)	761
Bsa29I	ATCGAT	1 cut(s)	180
BsaI	GGTCTC	1 cut(s)	388
BsaJI	CCNNGG	4 cut(s)	77, 536, 713, 918
Bsc4I	CCNNNNNNNGG	3 cut(s)	119, 261, 339
Bse1I	ACTGG	3 cut(s)	147, 853, 894
Bse3DI	GCAATG	1 cut(s)	447
BseBI	CCWGG	3 cut(s)	538, 588, 714
BseCI	ATCGAT	1 cut(s)	180
BseDI	CCNNGG	4 cut(s)	77, 536, 713, 918
BseGI	GGATG	1 cut(s)	787
BseLI	CCNNNNNNNGG	3 cut(s)	119, 261, 339
BseMI	GCAATG	1 cut(s)	447
BseMII	CTCAG	5 cut(s)	50, 195, 507, 563, 752
BseNI	ACTGG	3 cut(s)	147, 853, 894
BseRI	GAGGAG	1 cut(s)	444
BseSI	GKGCMC	1 cut(s)	256
BseXI	GCAGC	3 cut(s)	404, 695, 707
BshFI	GGCC	3 cut(s)	82, 254, 269
BshVI	ATCGAT	1 cut(s)	180
BsiHKAI	GWGCWC	2 cut(s)	586, 767
BslFI	GGGAC	3 cut(s)	153, 166, 355
BslI	CCNNNNNNNGG	3 cut(s)	119, 261, 339
BsmAI	GTCTC	2 cut(s)	285, 388
BsmFI	GGGAC	3 cut(s)	153, 166, 355
BsnI	GGCC	3 cut(s)	82, 254, 269
Bso31I	GGTCTC	1 cut(s)	388
Bsp120I	GGGCCC	1 cut(s)	252
Bsp1286I	GDGCHC	3 cut(s)	256, 586, 767
Bsp143I	GATC	3 cut(s)	511, 623, 913
Bsp1720I	GCTNAGC	1 cut(s)	761
Bsp19I	CCATGG	1 cut(s)	918
BspANI	GGCC	3 cut(s)	82, 254, 269
BspCNI	CTCAG	5 cut(s)	51, 196, 508, 562, 753
BspDI	ATCGAT	1 cut(s)	180
BspLI	GGNNCC	3 cut(s)	254, 481, 667
BspMI	ACCTGC	1 cut(s)	936
BspPI	GGATC	2 cut(s)	506, 908
BspTNI	GGTCTC	1 cut(s)	388
BsrDI	GCAATG	1 cut(s)	447
BsrI	ACTGG	3 cut(s)	147, 853, 894
BssECI	CCNNGG	4 cut(s)	77, 536, 713, 918
BssMI	GATC	3 cut(s)	511, 623, 913
BssSI	CACGAG	1 cut(s)	699
BssT1I	CCWWGG	2 cut(s)	77, 918
Bst2BI	CACGAG	1 cut(s)	699
Bst2UI	CCWGG	3 cut(s)	538, 588, 714
Bst4CI	ACNGT	2 cut(s)	789, 931
Bst6I	CTCTTC	1 cut(s)	281
BstAPI	GCANNNNNTGC	1 cut(s)	701
BstC8I	GCNNGC	1 cut(s)	497
BstDEI	CTNAG	7 cut(s)	59, 68, 204, 516, 549, 761, 863
BstDSI	CCRYGG	1 cut(s)	918
BstF5I	GGATG	1 cut(s)	787
BstKTI	GATC	3 cut(s)	514, 626, 916
BstMAI	GTCTC	2 cut(s)	285, 388
BstMBI	GATC	3 cut(s)	511, 623, 913
BstMWI	GCNNNNNNNGC	4 cut(s)	170, 692, 701, 951
BstNI	CCWGG	3 cut(s)	538, 588, 714
BstSCI	CCNGG	3 cut(s)	536, 586, 712
BstSLI	GKGCMC	1 cut(s)	256
BstV1I	GCAGC	3 cut(s)	404, 695, 707
BstV2I	GAAGAC	2 cut(s)	36, 70
Bsu15I	ATCGAT	1 cut(s)	180
BsuRI	GGCC	3 cut(s)	82, 254, 269
BsuTUI	ATCGAT	1 cut(s)	180
BtgI	CCRYGG	1 cut(s)	918
BtsCI	GGATG	1 cut(s)	787
BtsI	GCAGTG	1 cut(s)	106
BtsIMutI	CAGTG	3 cut(s)	106, 876, 936
BveI	ACCTGC	1 cut(s)	936
Cac8I	GCNNGC	1 cut(s)	497
Cfr13I	GGNCC	3 cut(s)	74, 252, 253
ClaI	ATCGAT	1 cut(s)	180
CviAII	CATG	3 cut(s)	200, 261, 919
DdeI	CTNAG	7 cut(s)	59, 68, 204, 516, 549, 761, 863
DpnI	GATC	3 cut(s)	513, 625, 915
DpnII	GATC	3 cut(s)	511, 623, 913
DrdI	GACNNNNNNGTC	1 cut(s)	72
DseDI	GACNNNNNNGTC	1 cut(s)	72
Eam1104I	CTCTTC	1 cut(s)	281
EarI	CTCTTC	1 cut(s)	281
Ecl136II	GAGCTC	1 cut(s)	584
Eco130I	CCWWGG	2 cut(s)	77, 918
Eco24I	GRGCYC	2 cut(s)	256, 586
Eco31I	GGTCTC	1 cut(s)	388
Eco47I	GGWCC	1 cut(s)	74
Eco53kI	GAGCTC	1 cut(s)	584
Eco57I	CTGAAG	1 cut(s)	135
EcoICRI	GAGCTC	1 cut(s)	584
EcoRII	CCWGG	3 cut(s)	536, 586, 712
EcoT14I	CCWWGG	2 cut(s)	77, 918
EcoT38I	GRGCYC	2 cut(s)	256, 586
ErhI	CCWWGG	2 cut(s)	77, 918
FaeI	CATG	3 cut(s)	203, 264, 922
FaqI	GGGAC	3 cut(s)	153, 166, 355
FatI	CATG	3 cut(s)	199, 260, 918
Fnu4HI	GCNGC	3 cut(s)	418, 684, 696
FokI	GGATG	1 cut(s)	794
FriOI	GRGCYC	2 cut(s)	256, 586
Fsp4HI	GCNGC	3 cut(s)	418, 684, 696
FspBI	CTAG	1 cut(s)	771
GluI	GCNGC	3 cut(s)	418, 684, 696
GsuI	CTGGAG	2 cut(s)	180, 911
HaeIII	GGCC	3 cut(s)	82, 254, 269
Hin1II	CATG	3 cut(s)	203, 264, 922
HincII	GTYRAC	1 cut(s)	367
HindII	GTYRAC	1 cut(s)	367
HindIII	AAGCTT	2 cut(s)	497, 952
HinfI	GANTC	1 cut(s)	524
HphI	GGTGA	2 cut(s)	119, 800
Hpy166II	GTNNAC	4 cut(s)	110, 314, 367, 905
Hpy188I	TCNGA	2 cut(s)	290, 628
Hpy188III	TCNNGA	2 cut(s)	159, 515
Hpy8I	GTNNAC	4 cut(s)	110, 314, 367, 905
HpyAV	CCTTC	2 cut(s)	259, 582
HpyCH4III	ACNGT	2 cut(s)	789, 931
HpyCH4IV	ACGT	1 cut(s)	23
HpyCH4V	TGCA	4 cut(s)	495, 660, 704, 785
HpyF10VI	GCNNNNNNNGC	4 cut(s)	170, 692, 701, 951
HpyF3I	CTNAG	7 cut(s)	59, 68, 204, 516, 549, 761, 863
HpySE526I	ACGT	1 cut(s)	23
Hsp92II	CATG	3 cut(s)	203, 264, 922
Kzo9I	GATC	3 cut(s)	511, 623, 913
LmnI	GCTCC	5 cut(s)	96, 161, 457, 589, 854
Lsp1109I	GCAGC	3 cut(s)	404, 695, 707
LweI	GCATC	2 cut(s)	415, 772
MaeI	CTAG	1 cut(s)	771
MaeII	ACGT	1 cut(s)	23
MaeIII	GTNAC	2 cut(s)	17, 724
MalI	GATC	3 cut(s)	513, 625, 915
MboI	GATC	3 cut(s)	511, 623, 913
MboII	GAAGA	6 cut(s)	20, 36, 75, 248, 268, 299
MhlI	GDGCHC	3 cut(s)	256, 586, 767
MluCI	AATT	4 cut(s)	11, 195, 870, 896
MmeI	TCCRAC	1 cut(s)	811
MseI	TTAA	3 cut(s)	54, 441, 950
MslI	CAYNNNNRTG	1 cut(s)	813
MspR9I	CCNGG	3 cut(s)	538, 588, 714
MvaI	CCWGG	3 cut(s)	538, 588, 714
MwoI	GCNNNNNNNGC	4 cut(s)	170, 692, 701, 951
NcoI	CCATGG	1 cut(s)	918
NdeII	GATC	3 cut(s)	511, 623, 913
NlaIII	CATG	3 cut(s)	203, 264, 922
NlaIV	GGNNCC	3 cut(s)	254, 481, 667
PfeI	GAWTC	1 cut(s)	524
PfoI	TCCNGGA	1 cut(s)	586
PkrI	GCNGC	3 cut(s)	419, 685, 697
Psp124BI	GAGCTC	1 cut(s)	586
Psp6I	CCWGG	3 cut(s)	536, 586, 712
PspGI	CCWGG	3 cut(s)	536, 586, 712
PspN4I	GGNNCC	3 cut(s)	254, 481, 667
PspOMI	GGGCCC	1 cut(s)	252
PspPI	GGNCC	3 cut(s)	74, 252, 253
RseI	CAYNNNNRTG	1 cut(s)	813
SacI	GAGCTC	1 cut(s)	586
SaqAI	TTAA	3 cut(s)	54, 441, 950
SatI	GCNGC	3 cut(s)	418, 684, 696
Sau3AI	GATC	3 cut(s)	511, 623, 913
Sau96I	GGNCC	3 cut(s)	74, 252, 253
ScrFI	CCNGG	3 cut(s)	538, 588, 714
SduI	GDGCHC	3 cut(s)	256, 586, 767
SfaNI	GCATC	2 cut(s)	415, 772
SinI	GGWCC	1 cut(s)	74
SmiMI	CAYNNNNRTG	1 cut(s)	813
Sse9I	AATT	4 cut(s)	11, 195, 870, 896
SspMI	CTAG	1 cut(s)	771
SstI	GAGCTC	1 cut(s)	586
StyD4I	CCNGG	3 cut(s)	536, 586, 712
StyI	CCWWGG	2 cut(s)	77, 918
TaaI	ACNGT	2 cut(s)	789, 931
TaiI	ACGT	1 cut(s)	26
TaqI	TCGA	1 cut(s)	180
TaqII	GACCGA	1 cut(s)	590
TasI	AATT	4 cut(s)	11, 195, 870, 896
TfiI	GAWTC	1 cut(s)	524
Tru1I	TTAA	3 cut(s)	54, 441, 950
Tru9I	TTAA	3 cut(s)	54, 441, 950
TscAI	CASTG	3 cut(s)	106, 883, 936
TseI	GCWGC	3 cut(s)	417, 683, 695
TspDTI	ATGAA	3 cut(s)	188, 249, 316
TspRI	CASTG	3 cut(s)	106, 883, 936
VpaK11BI	GGWCC	1 cut(s)	74
XapI	RAATTY	1 cut(s)	870
XspI	CTAG	1 cut(s)	771

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.