Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002338

Physical Location & Seq

Genomic Coordinates Reverse (-)

85435958 .. 85447027

Gene Structure 11070 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00147730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGATTGGGCCCATTCATGGAAGGCCACACTCTCATCGTTGATAGTCAGTGGGAATACTCACATCCTTAGAGTTACCCTTACAACTCTTATAAACAACACAGGAGAGCTGTTATGGAGACCTTTCCTCTACAATGAGAGCTGCCTTGATGCTTTACCGACGGTTAAATCCATTGCTCCTCCAAACCATACAGTCTGCTCTGGTTCCTTTATTCTATGCAAGCTTGTCTCCTGGTGGGAGAATGATGATCCAAATAAAAAATCTGCACTATTGTTGCACCAAGCAGATTGGCTTTTGTGGCTTCTTCATGGAAAACTCAGAGTGTCTGATTATAATAATGCTCTGAAGATAACTTCTTTGGGTTCAACACTTGCCATAAAACTGCTAAGTACTACTAGGATTGAGGATGCACGGTTTAGGGTGTATAGTCATCACCTTGATGATAAGTGGCTTGTTGGAGGTGCTTCAAATACTGGTGGAGCAGTTCTTAGACAAATTTTCACTGACGAGCAACTGGAGAAATTGAGTGAACAGATTGATCCCATGGAAACTTCTCCTCTGGACTACTACCCACTGCAATTAGTTGGTGAGAGATTTCCAATGGCAGATCCGAATATGGCTCCAAGATACTTGTTTTTTAAGGGAAGAGGAAATAAATATATAAGTGGTGCGTTAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0006793 GO:0006796 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019150 GO:0019200 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044262 GO:0044424 GO:0044444 GO:0044464 GO:0046835 GO:0071704 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FGGY_C FGGY_N

Protein Analysis

226

Amino Acids

25.54

Weight (kDa)

6.65

Isoelectric Point (pI)

29.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002338)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21370 AT2G21370 AT2G21370 AT2G21370
fragaria_vesca	FvH4_2g10090 FvH4_2g10090 FvH4_2g10090 FvH4_2g10090
malus_domestica	MD10G1065800.v1.1
prunus_persica	Prupe.8G087700_v2.0.a1 Prupe.8G087700_v2.0.a1
pyrus_communis	pycom10g05120
rosa_chinensis	RchiOBHm_Chr3g0496591 RchiOBHm_Chr4g0423361 RchiOBHm_Chr6g0267041
rosa_laevigata	RLG00000003987 RLG00000014047 RLG00000018837 RLG00000028975
rosa_multiflora	Rmu_sc0013804.1_g000007 Rmu_sc0030781.1_g000001 Rmu_sc0033156.1_g000001 Rmu_sc0033555.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147730 Rroxscaffold_2G00147740 Rroxscaffold_7G00201210
rosa_rugosa	Rorug01G0215500 Rorug02G0305900
rosa_samantha	Rh2BG290800 Rh2BG290900 Rh2DG285900 Rh3AG330100 Rh3CG362900 Rh3DG366000 Rh5CG284800 Rh6CG099100 Rh6CG146300 Rh6CG146400 Rh7BG254600 Rh7BG468800
rosa_wichuraiana	Rw3G028900 Rw6G013010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	92, 333
AclWI	GGATC	3 cut(s)	242, 533, 602
AcsI	RAATTY	1 cut(s)	495
AcuI	CTGAAG	1 cut(s)	365
AfaI	GTAC	1 cut(s)	391
AfiI	CCNNNNNNNGG	1 cut(s)	18
AgsI	TTSAA	2 cut(s)	366, 468
AjnI	CCWGG	1 cut(s)	230
AluBI	AGCT	3 cut(s)	109, 141, 223
AluI	AGCT	3 cut(s)	109, 141, 223
Alw26I	GTCTC	2 cut(s)	112, 232
AlwI	GGATC	3 cut(s)	242, 533, 602
AoxI	GGCC	2 cut(s)	9, 24
ApaI	GGGCCC	1 cut(s)	13
ApeKI	GCWGC	1 cut(s)	141
ApoI	RAATTY	1 cut(s)	495
AspS9I	GGNCC	2 cut(s)	9, 10
AsuHPI	GGTGA	2 cut(s)	425, 599
BaeGI	GKGCMC	1 cut(s)	13
BanII	GRGCYC	1 cut(s)	13
BbvI	GCAGC	1 cut(s)	128
BciT130I	CCWGG	1 cut(s)	232
BcoDI	GTCTC	2 cut(s)	112, 232
BfaI	CTAG	1 cut(s)	396
BisI	GCNGC	1 cut(s)	142
BlsI	GCNGC	1 cut(s)	143
BmcAI	AGTACT	1 cut(s)	391
Bme1390I	CCNGG	1 cut(s)	232
BmgT120I	GGNCC	2 cut(s)	9, 10
BmiI	GGNNCC	3 cut(s)	11, 205, 621
BmrFI	CCNGG	1 cut(s)	232
BmsI	GCATC	2 cut(s)	139, 397
BpmI	CTGGAG	1 cut(s)	536
BsaI	GGTCTC	1 cut(s)	112
BsaJI	CCNNGG	1 cut(s)	543
Bsc4I	CCNNNNNNNGG	1 cut(s)	18
Bse1I	ACTGG	2 cut(s)	478, 519
Bse3DI	GCAATG	1 cut(s)	171
BseBI	CCWGG	1 cut(s)	232
BseDI	CCNNGG	1 cut(s)	543
BseGI	GGATG	2 cut(s)	63, 412
BseLI	CCNNNNNNNGG	1 cut(s)	18
BseMI	GCAATG	1 cut(s)	171
BseMII	CTCAG	1 cut(s)	331
BseNI	ACTGG	2 cut(s)	478, 519
BseRI	GAGGAG	2 cut(s)	168, 546
BseSI	GKGCMC	1 cut(s)	13
BseXI	GCAGC	1 cut(s)	128
BsgI	GTGCAG	1 cut(s)	249
BshFI	GGCC	2 cut(s)	11, 26
BslI	CCNNNNNNNGG	1 cut(s)	18
BsmAI	GTCTC	2 cut(s)	112, 232
BsnI	GGCC	2 cut(s)	11, 26
Bso31I	GGTCTC	1 cut(s)	112
Bsp120I	GGGCCC	1 cut(s)	9
Bsp1286I	GDGCHC	1 cut(s)	13
Bsp143I	GATC	3 cut(s)	247, 538, 607
Bsp19I	CCATGG	1 cut(s)	543
BspANI	GGCC	2 cut(s)	11, 26
BspCNI	CTCAG	1 cut(s)	330
BspLI	GGNNCC	3 cut(s)	11, 205, 621
BspPI	GGATC	3 cut(s)	242, 533, 602
BspTNI	GGTCTC	1 cut(s)	112
BsrDI	GCAATG	1 cut(s)	171
BsrI	ACTGG	2 cut(s)	478, 519
BssECI	CCNNGG	1 cut(s)	543
BssMI	GATC	3 cut(s)	247, 538, 607
BssT1I	CCWWGG	1 cut(s)	543
Bst2UI	CCWGG	1 cut(s)	232
Bst4CI	ACNGT	3 cut(s)	163, 193, 414
Bst6I	CTCTTC	1 cut(s)	640
BstC8I	GCNNGC	1 cut(s)	221
BstDEI	CTNAG	4 cut(s)	68, 317, 386, 488
BstDSI	CCRYGG	1 cut(s)	543
BstF5I	GGATG	2 cut(s)	63, 412
BstKTI	GATC	3 cut(s)	250, 541, 610
BstMAI	GTCTC	2 cut(s)	112, 232
BstMBI	GATC	3 cut(s)	247, 538, 607
BstMWI	GCNNNNNNNGC	1 cut(s)	298
BstNI	CCWGG	1 cut(s)	232
BstSCI	CCNGG	1 cut(s)	230
BstSLI	GKGCMC	1 cut(s)	13
BstV1I	GCAGC	1 cut(s)	128
BstX2I	RGATCY	1 cut(s)	607
BstYI	RGATCY	1 cut(s)	607
BsuRI	GGCC	2 cut(s)	11, 26
BtgI	CCRYGG	1 cut(s)	543
BtsCI	GGATG	2 cut(s)	63, 412
BtsI	GCAGTG	1 cut(s)	572
BtsIMutI	CAGTG	3 cut(s)	55, 501, 572
Cac8I	GCNNGC	1 cut(s)	221
Cfr13I	GGNCC	2 cut(s)	9, 10
Csp6I	GTAC	1 cut(s)	390
CviAII	CATG	3 cut(s)	18, 308, 544
CviJI	RGCY	9 cut(s)	11, 26, 109, 141, 223, 292, 301, 451, 620
CviKI_1	RGCY	9 cut(s)	11, 26, 109, 141, 223, 292, 301, 451, 620
CviQI	GTAC	1 cut(s)	390
DdeI	CTNAG	4 cut(s)	68, 317, 386, 488
DpnI	GATC	3 cut(s)	249, 540, 609
DpnII	GATC	3 cut(s)	247, 538, 607
Eam1104I	CTCTTC	1 cut(s)	640
EarI	CTCTTC	1 cut(s)	640
Eco130I	CCWWGG	1 cut(s)	543
Eco24I	GRGCYC	1 cut(s)	13
Eco31I	GGTCTC	1 cut(s)	112
Eco57I	CTGAAG	1 cut(s)	365
EcoRII	CCWGG	1 cut(s)	230
EcoT14I	CCWWGG	1 cut(s)	543
EcoT38I	GRGCYC	1 cut(s)	13
ErhI	CCWWGG	1 cut(s)	543
FaeI	CATG	3 cut(s)	21, 311, 547
FatI	CATG	3 cut(s)	17, 307, 543
Fnu4HI	GCNGC	1 cut(s)	142
FokI	GGATG	2 cut(s)	50, 419
FriOI	GRGCYC	1 cut(s)	13
Fsp4HI	GCNGC	1 cut(s)	142
FspBI	CTAG	1 cut(s)	396
GluI	GCNGC	1 cut(s)	142
GsuI	CTGGAG	1 cut(s)	536
HaeIII	GGCC	2 cut(s)	11, 26
Hin1II	CATG	3 cut(s)	21, 311, 547
HindIII	AAGCTT	1 cut(s)	221
HphI	GGTGA	2 cut(s)	425, 599
Hpy166II	GTNNAC	1 cut(s)	530
Hpy188I	TCNGA	4 cut(s)	320, 328, 345, 612
Hpy188III	TCNNGA	1 cut(s)	560
Hpy8I	GTNNAC	1 cut(s)	530
Hpy99I	CGWCG	1 cut(s)	163
HpyAV	CCTTC	1 cut(s)	16
HpyCH4III	ACNGT	3 cut(s)	163, 193, 414
HpyCH4V	TGCA	5 cut(s)	219, 266, 277, 410, 577
HpyF10VI	GCNNNNNNNGC	1 cut(s)	298
HpyF3I	CTNAG	4 cut(s)	68, 317, 386, 488
Hsp92II	CATG	3 cut(s)	21, 311, 547
Kzo9I	GATC	3 cut(s)	247, 538, 607
LmnI	GCTCC	3 cut(s)	181, 479, 625
LpnPI	CCDG	7 cut(s)	87, 186, 217, 244, 459, 500, 545
Lsp1109I	GCAGC	1 cut(s)	128
LweI	GCATC	2 cut(s)	139, 397
MaeI	CTAG	1 cut(s)	396
MaeIII	GTNAC	1 cut(s)	73
MalI	GATC	3 cut(s)	249, 540, 609
MboI	GATC	3 cut(s)	247, 538, 607
MboII	GAAGA	3 cut(s)	296, 358, 657
MflI	RGATCY	1 cut(s)	607
MhlI	GDGCHC	1 cut(s)	13
MluCI	AATT	3 cut(s)	495, 521, 578
MmeI	TCCRAC	1 cut(s)	436
MnlI	CCTC	6 cut(s)	137, 189, 397, 452, 567, 641
MseI	TTAA	2 cut(s)	165, 639
MslI	CAYNNNNRTG	1 cut(s)	438
MspR9I	CCNGG	1 cut(s)	232
MvaI	CCWGG	1 cut(s)	232
MwoI	GCNNNNNNNGC	1 cut(s)	298
NcoI	CCATGG	1 cut(s)	543
NdeII	GATC	3 cut(s)	247, 538, 607
NlaIII	CATG	3 cut(s)	21, 311, 547
NlaIV	GGNNCC	3 cut(s)	11, 205, 621
PkrI	GCNGC	1 cut(s)	143
PsiI	TTATAA	2 cut(s)	92, 333
Psp6I	CCWGG	1 cut(s)	230
PspGI	CCWGG	1 cut(s)	230
PspN4I	GGNNCC	3 cut(s)	11, 205, 621
PspOMI	GGGCCC	1 cut(s)	9
PspPI	GGNCC	2 cut(s)	9, 10
PsuI	RGATCY	1 cut(s)	607
RsaI	GTAC	1 cut(s)	391
RsaNI	GTAC	1 cut(s)	390
RseI	CAYNNNNRTG	1 cut(s)	438
SaqAI	TTAA	2 cut(s)	165, 639
SatI	GCNGC	1 cut(s)	142
Sau3AI	GATC	3 cut(s)	247, 538, 607
Sau96I	GGNCC	2 cut(s)	9, 10
ScaI	AGTACT	1 cut(s)	391
ScrFI	CCNGG	1 cut(s)	232
SduI	GDGCHC	1 cut(s)	13
SetI	ASST	6 cut(s)	111, 124, 143, 225, 438, 463
SfaNI	GCATC	2 cut(s)	139, 397
SmiMI	CAYNNNNRTG	1 cut(s)	438
Sse9I	AATT	3 cut(s)	495, 521, 578
SspMI	CTAG	1 cut(s)	396
StyD4I	CCNGG	1 cut(s)	230
StyI	CCWWGG	1 cut(s)	543
TaaI	ACNGT	3 cut(s)	163, 193, 414
TasI	AATT	3 cut(s)	495, 521, 578
TatI	WGTACW	1 cut(s)	389
Tru1I	TTAA	2 cut(s)	165, 639
Tru9I	TTAA	2 cut(s)	165, 639
TscAI	CASTG	3 cut(s)	55, 508, 579
TseI	GCWGC	1 cut(s)	141
TspDTI	ATGAA	2 cut(s)	6, 296
TspRI	CASTG	3 cut(s)	55, 508, 579
XapI	RAATTY	1 cut(s)	495
XspI	CTAG	1 cut(s)	396
ZrmI	AGTACT	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.