Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0002338

Physical Location & Seq

Genomic Coordinates Reverse (-)

23210261 .. 23216141

Gene Structure 5881 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG254600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGAAGACGACGCGACAGAATTAGAGGATCGAGAGAGGATGATCGAGTTGTCGATCAATTTAACATTGATAGATTTGCCTGGCTTAACTAAGGTTGCTGTAGCCTGTAGATGTTTGTTACTGACAAAGGGGCAGCCAGAGAGTATTGTTCAAGACATAGAAAACATGCCTAACTGCATAATTCTAGCAATAACTCCTGCGAATCAAGACGTAGCAACATCTGATGCTATCAAGATCGCAAGAGAAGTTGATCCTACAGAAAGGATTTGTTTGCTCTTTCAATCTGCACTATTGTTGCACCAAGCAGATTGGCTTTTGTGGCTTCTTCATGGAAAACTCGGAGTGTCTGATTATAATAATGCTTTGAAGGTTGGTTATGATCCTGAGCTTGAATCCTATCCACCCTGGCTACTCTCTCAGCCCTATTCACAACTTTTACCTTCTGTTAGAGCTCCTGGAACTTCAATCGGTCATTTGAAAGAGGACATTAGATCGGATTTTGGTTTTCCAAGTACTGATTGTGCTGTATGCACAGGAACCACTGATAGTATAGCAGCTTTTTTAGCAGCTCGTGCAACACAACCTGGGAAAGCTGTAACTTCATTGGGTTCAACACTTGCCATAAAACTGCTGAGCACTACTAGGATTGAGGATGCACGGTTTGGGGTGTATAGTCATCGCCTTGATGATAAGTGGCTTGTTGGAGGTGCTTCAAATACTGGTGGAGCAGTTCTTACACAAATTTTCACTGACGAGCAACTGGAGAAATTGAGTGAACAGATTGATCCCATGGAAACTTCTCCTCTAGACTATTACCCACTGCAATCAGTTGGTGAGAGATTTCCAGTGGCAGATCCGAATATGGCTCCAAGATACTTGTTTTTTAAGGGAAGAGGAAATAAATATGAGTGGTGCGTTAGAGTACGTAGTATCTTTTGCACATATGATTATATCCTAATTTGTGGAAGCATTGTCAATCTTTCGCCTAAAAAAAAACAGTACACAATGAGATGCCTTCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0006793 GO:0006796 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019150 GO:0019200 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044262 GO:0044424 GO:0044444 GO:0044464 GO:0046835 GO:0071704 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FGGY_C FGGY_N

Protein Analysis

340

Amino Acids

37.76

Weight (kDa)

5.01

Isoelectric Point (pI)

41.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynamin_N	PF00350	19 - 91	2.2e-11	Dynamin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002338)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21370 AT2G21370 AT2G21370 AT2G21370
fragaria_vesca	FvH4_2g10090 FvH4_2g10090 FvH4_2g10090 FvH4_2g10090
malus_domestica	MD10G1065800.v1.1
prunus_persica	Prupe.8G087700_v2.0.a1 Prupe.8G087700_v2.0.a1
pyrus_communis	pycom10g05120
rosa_chinensis	RchiOBHm_Chr3g0496591 RchiOBHm_Chr4g0423361 RchiOBHm_Chr6g0267041
rosa_laevigata	RLG00000003987 RLG00000014047 RLG00000018837 RLG00000028975
rosa_multiflora	Rmu_sc0013804.1_g000007 Rmu_sc0030781.1_g000001 Rmu_sc0033156.1_g000001 Rmu_sc0033555.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147730 Rroxscaffold_2G00147740 Rroxscaffold_7G00201210
rosa_rugosa	Rorug01G0215500 Rorug02G0305900
rosa_samantha	Rh2BG290800 Rh2BG290900 Rh2DG285900 Rh3AG330100 Rh3CG362900 Rh3DG366000 Rh5CG284800 Rh6CG099100 Rh6CG146300 Rh6CG146400 Rh7BG254600 Rh7BG468800
rosa_wichuraiana	Rw3G028900 Rw6G013010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	354
AccII	CGCG	1 cut(s)	14
AclWI	GGATC	5 cut(s)	36, 245, 374, 779, 848
AcsI	RAATTY	1 cut(s)	741
AfaI	GTAC	3 cut(s)	514, 924, 1001
AgsI	TTSAA	8 cut(s)	152, 281, 367, 392, 465, 478, 612, 714
AjnI	CCWGG	4 cut(s)	79, 404, 454, 583
AluBI	AGCT	5 cut(s)	388, 452, 557, 569, 593
AluI	AGCT	5 cut(s)	388, 452, 557, 569, 593
Alw21I	GWGCWC	2 cut(s)	454, 638
AlwI	GGATC	5 cut(s)	36, 245, 374, 779, 848
ApeKI	GCWGC	3 cut(s)	133, 554, 566
ApoI	RAATTY	1 cut(s)	741
AsuHPI	GGTGA	1 cut(s)	845
BanII	GRGCYC	1 cut(s)	454
BauI	CACGAG	1 cut(s)	570
BbsI	GAAGAC	1 cut(s)	12
Bbv12I	GWGCWC	2 cut(s)	454, 638
BbvI	GCAGC	3 cut(s)	145, 566, 578
BciT130I	CCWGG	4 cut(s)	81, 406, 456, 585
BfaI	CTAG	3 cut(s)	185, 642, 806
BfmI	CTRYAG	4 cut(s)	99, 106, 255, 1019
BisI	GCNGC	3 cut(s)	134, 555, 567
BlpI	GCTNAGC	1 cut(s)	632
BlsI	GCNGC	3 cut(s)	135, 556, 568
BmcAI	AGTACT	1 cut(s)	514
Bme1390I	CCNGG	4 cut(s)	81, 406, 456, 585
BmiI	GGNNCC	2 cut(s)	538, 867
BmrFI	CCNGG	4 cut(s)	81, 406, 456, 585
BmsI	GCATC	3 cut(s)	214, 643, 1001
BpiI	GAAGAC	1 cut(s)	12
BpmI	CTGGAG	1 cut(s)	782
Bpu10I	CCTNAGC	1 cut(s)	384
Bpu1102I	GCTNAGC	1 cut(s)	632
BsaAI	YACGTR	1 cut(s)	926
BsaJI	CCNNGG	3 cut(s)	404, 584, 789
Bse1I	ACTGG	3 cut(s)	724, 765, 845
BseBI	CCWGG	4 cut(s)	81, 406, 456, 585
BseDI	CCNNGG	3 cut(s)	404, 584, 789
BseGI	GGATG	2 cut(s)	45, 658
BseMII	CTCAG	3 cut(s)	375, 431, 623
BseNI	ACTGG	3 cut(s)	724, 765, 845
BseRI	GAGGAG	1 cut(s)	792
BseXI	GCAGC	3 cut(s)	145, 566, 578
BsgI	GTGCAG	1 cut(s)	270
Bsh1236I	CGCG	1 cut(s)	14
BsiHKAI	GWGCWC	2 cut(s)	454, 638
Bsp1286I	GDGCHC	2 cut(s)	454, 638
Bsp143I	GATC	9 cut(s)	28, 42, 54, 234, 250, 379, 491, 784, 853
Bsp1720I	GCTNAGC	1 cut(s)	632
Bsp19I	CCATGG	1 cut(s)	789
BspCNI	CTCAG	3 cut(s)	376, 430, 624
BspFNI	CGCG	1 cut(s)	14
BspLI	GGNNCC	2 cut(s)	538, 867
BspPI	GGATC	5 cut(s)	36, 245, 374, 779, 848
BsrI	ACTGG	3 cut(s)	724, 765, 845
BssECI	CCNNGG	3 cut(s)	404, 584, 789
BssMI	GATC	9 cut(s)	28, 42, 54, 234, 250, 379, 491, 784, 853
BssSI	CACGAG	1 cut(s)	570
BssT1I	CCWWGG	1 cut(s)	789
Bst2BI	CACGAG	1 cut(s)	570
Bst2UI	CCWGG	4 cut(s)	81, 406, 456, 585
Bst4CI	ACNGT	2 cut(s)	660, 999
Bst6I	CTCTTC	1 cut(s)	886
BstAPI	GCANNNNNTGC	1 cut(s)	572
BstBAI	YACGTR	1 cut(s)	926
BstDEI	CTNAG	4 cut(s)	90, 384, 417, 632
BstDSI	CCRYGG	1 cut(s)	789
BstF5I	GGATG	2 cut(s)	45, 658
BstFNI	CGCG	1 cut(s)	14
BstKTI	GATC	9 cut(s)	31, 45, 57, 237, 253, 382, 494, 787, 856
BstMBI	GATC	9 cut(s)	28, 42, 54, 234, 250, 379, 491, 784, 853
BstMWI	GCNNNNNNNGC	3 cut(s)	319, 563, 572
BstNI	CCWGG	4 cut(s)	81, 406, 456, 585
BstNSI	RCATGY	1 cut(s)	169
BstSCI	CCNGG	4 cut(s)	79, 404, 454, 583
BstSFI	CTRYAG	4 cut(s)	99, 106, 255, 1019
BstSNI	TACGTA	1 cut(s)	926
BstUI	CGCG	1 cut(s)	14
BstV1I	GCAGC	3 cut(s)	145, 566, 578
BstV2I	GAAGAC	1 cut(s)	12
BstX2I	RGATCY	1 cut(s)	853
BstYI	RGATCY	1 cut(s)	853
BtgI	CCRYGG	1 cut(s)	789
BtgZI	GCGATG	1 cut(s)	662
BtsCI	GGATG	2 cut(s)	45, 658
BtsI	GCAGTG	1 cut(s)	818
BtsIMutI	CAGTG	4 cut(s)	540, 747, 818, 852
CseI	GACGC	1 cut(s)	20
Csp6I	GTAC	3 cut(s)	513, 923, 1000
CviAII	CATG	3 cut(s)	166, 329, 790
CviQI	GTAC	3 cut(s)	513, 923, 1000
DdeI	CTNAG	4 cut(s)	90, 384, 417, 632
DpnI	GATC	9 cut(s)	30, 44, 56, 236, 252, 381, 493, 786, 855
DpnII	GATC	9 cut(s)	28, 42, 54, 234, 250, 379, 491, 784, 853
Eam1104I	CTCTTC	1 cut(s)	886
EarI	CTCTTC	1 cut(s)	886
Ecl136II	GAGCTC	1 cut(s)	452
Eco105I	TACGTA	1 cut(s)	926
Eco130I	CCWWGG	1 cut(s)	789
Eco24I	GRGCYC	1 cut(s)	454
Eco53kI	GAGCTC	1 cut(s)	452
EcoICRI	GAGCTC	1 cut(s)	452
EcoRII	CCWGG	4 cut(s)	79, 404, 454, 583
EcoT14I	CCWWGG	1 cut(s)	789
EcoT38I	GRGCYC	1 cut(s)	454
ErhI	CCWWGG	1 cut(s)	789
FaeI	CATG	3 cut(s)	169, 332, 793
FatI	CATG	3 cut(s)	165, 328, 789
FauNDI	CATATG	1 cut(s)	943
Fnu4HI	GCNGC	3 cut(s)	134, 555, 567
FokI	GGATG	2 cut(s)	52, 665
FriOI	GRGCYC	1 cut(s)	454
Fsp4HI	GCNGC	3 cut(s)	134, 555, 567
FspBI	CTAG	3 cut(s)	185, 642, 806
GluI	GCNGC	3 cut(s)	134, 555, 567
GsuI	CTGGAG	1 cut(s)	782
HgaI	GACGC	1 cut(s)	20
Hin1II	CATG	3 cut(s)	169, 332, 793
HinfI	GANTC	2 cut(s)	202, 392
HphI	GGTGA	1 cut(s)	845
Hpy166II	GTNNAC	2 cut(s)	776, 1002
Hpy188I	TCNGA	5 cut(s)	223, 341, 349, 496, 858
Hpy188III	TCNNGA	6 cut(s)	32, 152, 206, 232, 383, 806
Hpy8I	GTNNAC	2 cut(s)	776, 1002
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	2 cut(s)	361, 450
HpyCH4III	ACNGT	2 cut(s)	660, 999
HpyCH4IV	ACGT	2 cut(s)	210, 925
HpyCH4V	TGCA	8 cut(s)	177, 287, 298, 531, 575, 656, 823, 939
HpyF10VI	GCNNNNNNNGC	3 cut(s)	319, 563, 572
HpyF3I	CTNAG	4 cut(s)	90, 384, 417, 632
HpySE526I	ACGT	2 cut(s)	210, 925
Hsp92II	CATG	3 cut(s)	169, 332, 793
Kzo9I	GATC	9 cut(s)	28, 42, 54, 234, 250, 379, 491, 784, 853
LmnI	GCTCC	3 cut(s)	457, 725, 871
Lsp1109I	GCAGC	3 cut(s)	145, 566, 578
LweI	GCATC	3 cut(s)	214, 643, 1001
MaeI	CTAG	3 cut(s)	185, 642, 806
MaeII	ACGT	2 cut(s)	210, 925
MaeIII	GTNAC	2 cut(s)	117, 595
MalI	GATC	9 cut(s)	30, 44, 56, 236, 252, 381, 493, 786, 855
MboI	GATC	9 cut(s)	28, 42, 54, 234, 250, 379, 491, 784, 853
MboII	GAAGA	3 cut(s)	17, 317, 903
MflI	RGATCY	1 cut(s)	853
MhlI	GDGCHC	2 cut(s)	454, 638
MluCI	AATT	6 cut(s)	20, 58, 180, 741, 767, 957
MmeI	TCCRAC	1 cut(s)	682
MnlI	CCTC	7 cut(s)	19, 30, 475, 643, 698, 813, 887
MseI	TTAA	3 cut(s)	62, 86, 885
MspR9I	CCNGG	4 cut(s)	81, 406, 456, 585
MvaI	CCWGG	4 cut(s)	81, 406, 456, 585
MvnI	CGCG	1 cut(s)	14
MwoI	GCNNNNNNNGC	3 cut(s)	319, 563, 572
NcoI	CCATGG	1 cut(s)	789
NdeI	CATATG	1 cut(s)	943
NdeII	GATC	9 cut(s)	28, 42, 54, 234, 250, 379, 491, 784, 853
NlaIII	CATG	3 cut(s)	169, 332, 793
NlaIV	GGNNCC	2 cut(s)	538, 867
NspI	RCATGY	1 cut(s)	169
PfeI	GAWTC	2 cut(s)	202, 392
PfoI	TCCNGGA	1 cut(s)	454
PkrI	GCNGC	3 cut(s)	135, 556, 568
Ppu21I	YACGTR	1 cut(s)	926
PsiI	TTATAA	1 cut(s)	354
Psp124BI	GAGCTC	1 cut(s)	454
Psp6I	CCWGG	4 cut(s)	79, 404, 454, 583
PspGI	CCWGG	4 cut(s)	79, 404, 454, 583
PspN4I	GGNNCC	2 cut(s)	538, 867
PsuI	RGATCY	1 cut(s)	853
RsaI	GTAC	3 cut(s)	514, 924, 1001
RsaNI	GTAC	3 cut(s)	513, 923, 1000
SacI	GAGCTC	1 cut(s)	454
SaqAI	TTAA	3 cut(s)	62, 86, 885
SatI	GCNGC	3 cut(s)	134, 555, 567
Sau3AI	GATC	9 cut(s)	28, 42, 54, 234, 250, 379, 491, 784, 853
ScaI	AGTACT	1 cut(s)	514
ScrFI	CCNGG	4 cut(s)	81, 406, 456, 585
SduI	GDGCHC	2 cut(s)	454, 638
SfaNI	GCATC	3 cut(s)	214, 643, 1001
SfcI	CTRYAG	4 cut(s)	99, 106, 255, 1019
SnaBI	TACGTA	1 cut(s)	926
Sse9I	AATT	6 cut(s)	20, 58, 180, 741, 767, 957
SspMI	CTAG	3 cut(s)	185, 642, 806
SstI	GAGCTC	1 cut(s)	454
StyD4I	CCNGG	4 cut(s)	79, 404, 454, 583
StyI	CCWWGG	1 cut(s)	789
TaaI	ACNGT	2 cut(s)	660, 999
TaiI	ACGT	2 cut(s)	213, 928
TaqI	TCGA	3 cut(s)	31, 45, 53
TaqII	GACCGA	1 cut(s)	458
TasI	AATT	6 cut(s)	20, 58, 180, 741, 767, 957
TatI	WGTACW	2 cut(s)	512, 999
TfiI	GAWTC	2 cut(s)	202, 392
Tru1I	TTAA	3 cut(s)	62, 86, 885
Tru9I	TTAA	3 cut(s)	62, 86, 885
TscAI	CASTG	4 cut(s)	547, 754, 825, 852
TseI	GCWGC	3 cut(s)	133, 554, 566
TspDTI	ATGAA	2 cut(s)	317, 591
TspRI	CASTG	4 cut(s)	547, 754, 825, 852
XapI	RAATTY	1 cut(s)	741
XbaI	TCTAGA	1 cut(s)	805
XceI	RCATGY	1 cut(s)	169
XspI	CTAG	3 cut(s)	185, 642, 806
ZrmI	AGTACT	1 cut(s)	514

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.