Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0002338

Physical Location & Seq

Genomic Coordinates Reverse (-)

55423430 .. 55426357

Gene Structure 2928 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG468800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGACAGAGAAATCAAACCGTATTTCTAATGTTCCTATTCATCTCAGCATATACTCCCCAAATGTTGTCAATTTAACATTGATAGATTTGCCTGGCTTAACTAAGGTTGCTGTAGCCTGTAGATGTTTGTTACTGACAGAGGGGCAGCCAGAGAGTATTGTTCAAGACATAGAAAACATGCCTAACTGCATAATTCTAGCAATAACTCCTGCGAATCAAGACGTAGCAACATCTGATGCTATCAAGATCGCAAGAGAAGTTGATCCTACAGGTTTTCCAAGTACTGATTGTGCTGTATGCACAGGAACCACTGATAGTATAGCAGCTTTTTTAGCAGCTCGTGCAACACAACCTGGGAAAGCTGTAACTTCATTGGGTTCAACACTTGCCATAAAACTGCTGAGCACTACTAGGATTGAGGATGCACGGTTTGGGGTGTATAGTCATCGCCTTGATGATAAGTGGCTTGTTGGAGGTGCTTCAAATACTGGTGGAGCAGTTCTTACACAAATTTTCACTGACGAGCAACTGGAGAAATTGAGTGAACAGATTGATCCCATGGAAACTTCTCCTCTAGACTATTACCCACTGCAATCAGTTGGTGAGAGATTTCCAGTGGCAGATCCGAATATGGCTCCAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0006793 GO:0006796 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019150 GO:0019200 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044262 GO:0044424 GO:0044444 GO:0044464 GO:0046835 GO:0071704 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FGGY_C FGGY_N

Protein Analysis

214

Amino Acids

22.95

Weight (kDa)

4.65

Isoelectric Point (pI)

40.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynamin_N	PF00350	3 - 91	9.1e-17	Dynamin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002338)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21370 AT2G21370 AT2G21370 AT2G21370
fragaria_vesca	FvH4_2g10090 FvH4_2g10090 FvH4_2g10090 FvH4_2g10090
malus_domestica	MD10G1065800.v1.1
prunus_persica	Prupe.8G087700_v2.0.a1 Prupe.8G087700_v2.0.a1
pyrus_communis	pycom10g05120
rosa_chinensis	RchiOBHm_Chr3g0496591 RchiOBHm_Chr4g0423361 RchiOBHm_Chr6g0267041
rosa_laevigata	RLG00000003987 RLG00000014047 RLG00000018837 RLG00000028975
rosa_multiflora	Rmu_sc0013804.1_g000007 Rmu_sc0030781.1_g000001 Rmu_sc0033156.1_g000001 Rmu_sc0033555.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147730 Rroxscaffold_2G00147740 Rroxscaffold_7G00201210
rosa_rugosa	Rorug01G0215500 Rorug02G0305900
rosa_samantha	Rh2BG290800 Rh2BG290900 Rh2DG285900 Rh3AG330100 Rh3CG362900 Rh3DG366000 Rh5CG284800 Rh6CG099100 Rh6CG146300 Rh6CG146400 Rh7BG254600 Rh7BG468800
rosa_wichuraiana	Rw3G028900 Rw6G013010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	257, 548, 617
AcsI	RAATTY	1 cut(s)	510
AfaI	GTAC	1 cut(s)	283
AgsI	TTSAA	3 cut(s)	164, 381, 483
AjnI	CCWGG	2 cut(s)	91, 352
AluBI	AGCT	3 cut(s)	326, 338, 362
AluI	AGCT	3 cut(s)	326, 338, 362
Alw21I	GWGCWC	1 cut(s)	407
AlwI	GGATC	3 cut(s)	257, 548, 617
ApeKI	GCWGC	3 cut(s)	145, 323, 335
ApoI	RAATTY	1 cut(s)	510
AsuHPI	GGTGA	1 cut(s)	614
BauI	CACGAG	1 cut(s)	339
Bbv12I	GWGCWC	1 cut(s)	407
BbvI	GCAGC	3 cut(s)	157, 335, 347
BciT130I	CCWGG	2 cut(s)	93, 354
BfaI	CTAG	3 cut(s)	197, 411, 575
BfmI	CTRYAG	3 cut(s)	111, 118, 267
BisI	GCNGC	3 cut(s)	146, 324, 336
BlpI	GCTNAGC	1 cut(s)	401
BlsI	GCNGC	3 cut(s)	147, 325, 337
BmcAI	AGTACT	1 cut(s)	283
Bme1390I	CCNGG	2 cut(s)	93, 354
BmiI	GGNNCC	2 cut(s)	307, 636
BmrFI	CCNGG	2 cut(s)	93, 354
BmsI	GCATC	2 cut(s)	226, 412
BpmI	CTGGAG	1 cut(s)	551
Bpu1102I	GCTNAGC	1 cut(s)	401
BsaJI	CCNNGG	2 cut(s)	353, 558
Bse1I	ACTGG	3 cut(s)	493, 534, 614
BseBI	CCWGG	2 cut(s)	93, 354
BseDI	CCNNGG	2 cut(s)	353, 558
BseGI	GGATG	1 cut(s)	427
BseMII	CTCAG	2 cut(s)	58, 392
BseNI	ACTGG	3 cut(s)	493, 534, 614
BseRI	GAGGAG	1 cut(s)	561
BseXI	GCAGC	3 cut(s)	157, 335, 347
BsiHKAI	GWGCWC	1 cut(s)	407
Bsp1286I	GDGCHC	1 cut(s)	407
Bsp143I	GATC	4 cut(s)	246, 262, 553, 622
Bsp1720I	GCTNAGC	1 cut(s)	401
Bsp19I	CCATGG	1 cut(s)	558
BspCNI	CTCAG	2 cut(s)	57, 393
BspLI	GGNNCC	2 cut(s)	307, 636
BspPI	GGATC	3 cut(s)	257, 548, 617
BsrI	ACTGG	3 cut(s)	493, 534, 614
BssECI	CCNNGG	2 cut(s)	353, 558
BssMI	GATC	4 cut(s)	246, 262, 553, 622
BssSI	CACGAG	1 cut(s)	339
BssT1I	CCWWGG	1 cut(s)	558
Bst2BI	CACGAG	1 cut(s)	339
Bst2UI	CCWGG	2 cut(s)	93, 354
Bst4CI	ACNGT	2 cut(s)	20, 429
BstAPI	GCANNNNNTGC	1 cut(s)	341
BstDEI	CTNAG	3 cut(s)	44, 102, 401
BstDSI	CCRYGG	1 cut(s)	558
BstF5I	GGATG	1 cut(s)	427
BstKTI	GATC	4 cut(s)	249, 265, 556, 625
BstMBI	GATC	4 cut(s)	246, 262, 553, 622
BstMWI	GCNNNNNNNGC	2 cut(s)	332, 341
BstNI	CCWGG	2 cut(s)	93, 354
BstNSI	RCATGY	1 cut(s)	181
BstSCI	CCNGG	2 cut(s)	91, 352
BstSFI	CTRYAG	3 cut(s)	111, 118, 267
BstV1I	GCAGC	3 cut(s)	157, 335, 347
BstX2I	RGATCY	1 cut(s)	622
BstYI	RGATCY	1 cut(s)	622
BtgI	CCRYGG	1 cut(s)	558
BtgZI	GCGATG	1 cut(s)	431
BtsCI	GGATG	1 cut(s)	427
BtsI	GCAGTG	1 cut(s)	587
BtsIMutI	CAGTG	4 cut(s)	309, 516, 587, 621
Csp6I	GTAC	1 cut(s)	282
CviAII	CATG	2 cut(s)	178, 559
CviJI	RGCY	8 cut(s)	96, 116, 148, 326, 338, 362, 466, 635
CviKI_1	RGCY	8 cut(s)	96, 116, 148, 326, 338, 362, 466, 635
CviQI	GTAC	1 cut(s)	282
DdeI	CTNAG	3 cut(s)	44, 102, 401
DpnI	GATC	4 cut(s)	248, 264, 555, 624
DpnII	GATC	4 cut(s)	246, 262, 553, 622
Eco130I	CCWWGG	1 cut(s)	558
EcoRII	CCWGG	2 cut(s)	91, 352
EcoT14I	CCWWGG	1 cut(s)	558
ErhI	CCWWGG	1 cut(s)	558
FaeI	CATG	2 cut(s)	181, 562
FatI	CATG	2 cut(s)	177, 558
Fnu4HI	GCNGC	3 cut(s)	146, 324, 336
FokI	GGATG	1 cut(s)	434
Fsp4HI	GCNGC	3 cut(s)	146, 324, 336
FspBI	CTAG	3 cut(s)	197, 411, 575
GluI	GCNGC	3 cut(s)	146, 324, 336
GsuI	CTGGAG	1 cut(s)	551
Hin1II	CATG	2 cut(s)	181, 562
HinfI	GANTC	1 cut(s)	214
HphI	GGTGA	1 cut(s)	614
Hpy166II	GTNNAC	1 cut(s)	545
Hpy188I	TCNGA	2 cut(s)	235, 627
Hpy188III	TCNNGA	4 cut(s)	164, 218, 244, 575
Hpy8I	GTNNAC	1 cut(s)	545
HpyCH4III	ACNGT	2 cut(s)	20, 429
HpyCH4IV	ACGT	1 cut(s)	222
HpyCH4V	TGCA	5 cut(s)	189, 300, 344, 425, 592
HpyF10VI	GCNNNNNNNGC	2 cut(s)	332, 341
HpyF3I	CTNAG	3 cut(s)	44, 102, 401
HpySE526I	ACGT	1 cut(s)	222
Hsp92II	CATG	2 cut(s)	181, 562
Kzo9I	GATC	4 cut(s)	246, 262, 553, 622
LmnI	GCTCC	2 cut(s)	494, 640
Lsp1109I	GCAGC	3 cut(s)	157, 335, 347
LweI	GCATC	2 cut(s)	226, 412
MaeI	CTAG	3 cut(s)	197, 411, 575
MaeII	ACGT	1 cut(s)	222
MaeIII	GTNAC	2 cut(s)	129, 364
MalI	GATC	4 cut(s)	248, 264, 555, 624
MboI	GATC	4 cut(s)	246, 262, 553, 622
MflI	RGATCY	1 cut(s)	622
MhlI	GDGCHC	1 cut(s)	407
MluCI	AATT	4 cut(s)	70, 192, 510, 536
MmeI	TCCRAC	1 cut(s)	451
MnlI	CCTC	4 cut(s)	133, 412, 467, 582
MseI	TTAA	2 cut(s)	74, 98
MspR9I	CCNGG	2 cut(s)	93, 354
MvaI	CCWGG	2 cut(s)	93, 354
MwoI	GCNNNNNNNGC	2 cut(s)	332, 341
NcoI	CCATGG	1 cut(s)	558
NdeII	GATC	4 cut(s)	246, 262, 553, 622
NlaIII	CATG	2 cut(s)	181, 562
NlaIV	GGNNCC	2 cut(s)	307, 636
NspI	RCATGY	1 cut(s)	181
PfeI	GAWTC	1 cut(s)	214
PkrI	GCNGC	3 cut(s)	147, 325, 337
Psp6I	CCWGG	2 cut(s)	91, 352
PspGI	CCWGG	2 cut(s)	91, 352
PspN4I	GGNNCC	2 cut(s)	307, 636
PsuI	RGATCY	1 cut(s)	622
RsaI	GTAC	1 cut(s)	283
RsaNI	GTAC	1 cut(s)	282
SaqAI	TTAA	2 cut(s)	74, 98
SatI	GCNGC	3 cut(s)	146, 324, 336
Sau3AI	GATC	4 cut(s)	246, 262, 553, 622
ScaI	AGTACT	1 cut(s)	283
ScrFI	CCNGG	2 cut(s)	93, 354
SduI	GDGCHC	1 cut(s)	407
SetI	ASST	8 cut(s)	108, 225, 274, 328, 340, 355, 364, 478
SfaNI	GCATC	2 cut(s)	226, 412
SfcI	CTRYAG	3 cut(s)	111, 118, 267
Sse9I	AATT	4 cut(s)	70, 192, 510, 536
SspMI	CTAG	3 cut(s)	197, 411, 575
StyD4I	CCNGG	2 cut(s)	91, 352
StyI	CCWWGG	1 cut(s)	558
TaaI	ACNGT	2 cut(s)	20, 429
TaiI	ACGT	1 cut(s)	225
TasI	AATT	4 cut(s)	70, 192, 510, 536
TatI	WGTACW	1 cut(s)	281
TfiI	GAWTC	1 cut(s)	214
Tru1I	TTAA	2 cut(s)	74, 98
Tru9I	TTAA	2 cut(s)	74, 98
TscAI	CASTG	4 cut(s)	316, 523, 594, 621
TseI	GCWGC	3 cut(s)	145, 323, 335
TspDTI	ATGAA	2 cut(s)	29, 360
TspRI	CASTG	4 cut(s)	316, 523, 594, 621
XapI	RAATTY	1 cut(s)	510
XbaI	TCTAGA	1 cut(s)	574
XceI	RCATGY	1 cut(s)	181
XspI	CTAG	3 cut(s)	197, 411, 575
ZrmI	AGTACT	1 cut(s)	283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.