Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0002338

Physical Location & Seq

Genomic Coordinates Reverse (-)

31209397 .. 31210584

Gene Structure 1188 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG284800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGACTTTTGGGAGCAGTGGAGGTGAACCTGAAGTTGGGGAGCGGCTTTATCTGGGATTGGACTTTGGGACTTTTGGAGCGAGGTTTGCCGTTATAGATAAACGAGGGATAATTCATGCTGAGGGAAAGAAAGAACACTCTCTTTTTATGGTAACTTCTTTGGGTTCAACACTTGCCATAAAACTGCTGAGCACTACTAGGGTTGAGGATGCACGGTTTGGGGTGTATAGTCATCGCCTTGATGATAAGTGGCTTGTTGGAGGTGCTTCAAATACAGGTGGAGCAGTTCTTAGACAAATTTTCACTGACGAGCAACTAGAGAAATTGAGTGAACATATTGATCCCATGGAAGCTTCTCCTCTGGACTATTGCCCACTGCAATTAGTTGGTGTGAGATTTCCAGTGGCAGATCCGAATATGGCTCCAAGATACTTGTTTTTTAAGGGAAGAGGAAATAAATATATGAGTGGTGCGTTAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0006793 GO:0006796 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019150 GO:0019200 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044262 GO:0044424 GO:0044444 GO:0044464 GO:0046835 GO:0071704 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FGGY_C FGGY_N

Protein Analysis

160

Amino Acids

17.59

Weight (kDa)

6.09

Isoelectric Point (pI)

29.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002338)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21370 AT2G21370 AT2G21370 AT2G21370
fragaria_vesca	FvH4_2g10090 FvH4_2g10090 FvH4_2g10090 FvH4_2g10090
malus_domestica	MD10G1065800.v1.1
prunus_persica	Prupe.8G087700_v2.0.a1 Prupe.8G087700_v2.0.a1
pyrus_communis	pycom10g05120
rosa_chinensis	RchiOBHm_Chr3g0496591 RchiOBHm_Chr4g0423361 RchiOBHm_Chr6g0267041
rosa_laevigata	RLG00000003987 RLG00000014047 RLG00000018837 RLG00000028975
rosa_multiflora	Rmu_sc0013804.1_g000007 Rmu_sc0030781.1_g000001 Rmu_sc0033156.1_g000001 Rmu_sc0033555.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147730 Rroxscaffold_2G00147740 Rroxscaffold_7G00201210
rosa_rugosa	Rorug01G0215500 Rorug02G0305900
rosa_samantha	Rh2BG290800 Rh2BG290900 Rh2DG285900 Rh3AG330100 Rh3CG362900 Rh3DG366000 Rh5CG284800 Rh6CG099100 Rh6CG146300 Rh6CG146400 Rh7BG254600 Rh7BG468800
rosa_wichuraiana	Rw3G028900 Rw6G013010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	43
AciI	CCGC	1 cut(s)	43
AclWI	GGATC	2 cut(s)	335, 404
AcsI	RAATTY	1 cut(s)	297
AcuI	CTGAAG	1 cut(s)	51
AfiI	CCNNNNNNNGG	1 cut(s)	35
AgsI	TTSAA	2 cut(s)	168, 270
AjuI	GAANNNNNNNTTGG	2 cut(s)	18, 50
AluBI	AGCT	1 cut(s)	353
AluI	AGCT	1 cut(s)	353
Alw21I	GWGCWC	1 cut(s)	194
AlwI	GGATC	2 cut(s)	335, 404
ApoI	RAATTY	1 cut(s)	297
AsuHPI	GGTGA	1 cut(s)	35
Bbv12I	GWGCWC	1 cut(s)	194
BbvCI	CCTCAGC	1 cut(s)	120
BceAI	ACGGC	1 cut(s)	74
BfaI	CTAG	2 cut(s)	198, 317
BisI	GCNGC	1 cut(s)	44
BlpI	GCTNAGC	1 cut(s)	188
BlsI	GCNGC	1 cut(s)	45
BmiI	GGNNCC	1 cut(s)	423
BmsI	GCATC	1 cut(s)	199
Bpu10I	CCTNAGC	1 cut(s)	120
Bpu1102I	GCTNAGC	1 cut(s)	188
BsaJI	CCNNGG	1 cut(s)	345
Bsc4I	CCNNNNNNNGG	1 cut(s)	35
Bse1I	ACTGG	1 cut(s)	401
BseDI	CCNNGG	1 cut(s)	345
BseGI	GGATG	1 cut(s)	214
BseLI	CCNNNNNNNGG	1 cut(s)	35
BseMII	CTCAG	2 cut(s)	111, 179
BseNI	ACTGG	1 cut(s)	401
BseRI	GAGGAG	1 cut(s)	348
BsiHKAI	GWGCWC	1 cut(s)	194
BslFI	GGGAC	1 cut(s)	82
BslI	CCNNNNNNNGG	1 cut(s)	35
BsmFI	GGGAC	1 cut(s)	82
Bsp1286I	GDGCHC	1 cut(s)	194
Bsp143I	GATC	2 cut(s)	340, 409
Bsp1720I	GCTNAGC	1 cut(s)	188
Bsp19I	CCATGG	1 cut(s)	345
BspACI	CCGC	1 cut(s)	43
BspCNI	CTCAG	2 cut(s)	112, 180
BspLI	GGNNCC	1 cut(s)	423
BspPI	GGATC	2 cut(s)	335, 404
BsrBI	CCGCTC	1 cut(s)	43
BsrI	ACTGG	1 cut(s)	401
BssECI	CCNNGG	1 cut(s)	345
BssMI	GATC	2 cut(s)	340, 409
BssT1I	CCWWGG	1 cut(s)	345
Bst4CI	ACNGT	1 cut(s)	216
Bst6I	CTCTTC	1 cut(s)	442
BstDEI	CTNAG	3 cut(s)	120, 188, 290
BstDSI	CCRYGG	1 cut(s)	345
BstF5I	GGATG	1 cut(s)	214
BstKTI	GATC	2 cut(s)	343, 412
BstMBI	GATC	2 cut(s)	340, 409
BstMWI	GCNNNNNNNGC	1 cut(s)	86
BstX2I	RGATCY	1 cut(s)	409
BstYI	RGATCY	1 cut(s)	409
BtgI	CCRYGG	1 cut(s)	345
BtgZI	GCGATG	1 cut(s)	218
BtsCI	GGATG	1 cut(s)	214
BtsI	GCAGTG	2 cut(s)	22, 374
BtsIMutI	CAGTG	4 cut(s)	22, 303, 374, 408
CviAII	CATG	2 cut(s)	116, 346
CviJI	RGCY	4 cut(s)	46, 253, 353, 422
CviKI_1	RGCY	4 cut(s)	46, 253, 353, 422
DdeI	CTNAG	3 cut(s)	120, 188, 290
DpnI	GATC	2 cut(s)	342, 411
DpnII	GATC	2 cut(s)	340, 409
Eam1104I	CTCTTC	1 cut(s)	442
EarI	CTCTTC	1 cut(s)	442
Eco130I	CCWWGG	1 cut(s)	345
Eco57I	CTGAAG	1 cut(s)	51
EcoT14I	CCWWGG	1 cut(s)	345
ErhI	CCWWGG	1 cut(s)	345
FaeI	CATG	2 cut(s)	119, 349
FaqI	GGGAC	1 cut(s)	82
FatI	CATG	2 cut(s)	115, 345
Fnu4HI	GCNGC	1 cut(s)	44
FokI	GGATG	1 cut(s)	221
Fsp4HI	GCNGC	1 cut(s)	44
FspBI	CTAG	2 cut(s)	198, 317
GluI	GCNGC	1 cut(s)	44
Hin1II	CATG	2 cut(s)	119, 349
HindIII	AAGCTT	1 cut(s)	351
HphI	GGTGA	1 cut(s)	35
Hpy166II	GTNNAC	2 cut(s)	26, 332
Hpy188I	TCNGA	1 cut(s)	414
Hpy188III	TCNNGA	1 cut(s)	362
Hpy8I	GTNNAC	2 cut(s)	26, 332
HpyCH4III	ACNGT	1 cut(s)	216
HpyCH4V	TGCA	2 cut(s)	212, 379
HpyF10VI	GCNNNNNNNGC	1 cut(s)	86
HpyF3I	CTNAG	3 cut(s)	120, 188, 290
Hsp92II	CATG	2 cut(s)	119, 349
Kzo9I	GATC	2 cut(s)	340, 409
LmnI	GCTCC	5 cut(s)	12, 40, 77, 281, 427
LpnPI	CCDG	5 cut(s)	38, 42, 261, 347, 414
LweI	GCATC	1 cut(s)	199
MaeI	CTAG	2 cut(s)	198, 317
MaeIII	GTNAC	1 cut(s)	151
MalI	GATC	2 cut(s)	342, 411
MbiI	CCGCTC	1 cut(s)	43
MboI	GATC	2 cut(s)	340, 409
MboII	GAAGA	1 cut(s)	459
MflI	RGATCY	1 cut(s)	409
MhlI	GDGCHC	1 cut(s)	194
MluCI	AATT	4 cut(s)	111, 297, 323, 380
MmeI	TCCRAC	1 cut(s)	238
MnlI	CCTC	8 cut(s)	14, 75, 98, 115, 199, 254, 369, 443
MseI	TTAA	1 cut(s)	441
MwoI	GCNNNNNNNGC	1 cut(s)	86
NcoI	CCATGG	1 cut(s)	345
NdeII	GATC	2 cut(s)	340, 409
NlaIII	CATG	2 cut(s)	119, 349
NlaIV	GGNNCC	1 cut(s)	423
PkrI	GCNGC	1 cut(s)	45
PspN4I	GGNNCC	1 cut(s)	423
PsuI	RGATCY	1 cut(s)	409
SaqAI	TTAA	1 cut(s)	441
SatI	GCNGC	1 cut(s)	44
Sau3AI	GATC	2 cut(s)	340, 409
SduI	GDGCHC	1 cut(s)	194
SetI	ASST	6 cut(s)	25, 31, 86, 265, 280, 355
SfaNI	GCATC	1 cut(s)	199
Sse9I	AATT	4 cut(s)	111, 297, 323, 380
SsiI	CCGC	1 cut(s)	43
SspMI	CTAG	2 cut(s)	198, 317
StyI	CCWWGG	1 cut(s)	345
TaaI	ACNGT	1 cut(s)	216
TasI	AATT	4 cut(s)	111, 297, 323, 380
TauI	GCSGC	1 cut(s)	46
Tru1I	TTAA	1 cut(s)	441
Tru9I	TTAA	1 cut(s)	441
TscAI	CASTG	4 cut(s)	22, 310, 381, 408
TspDTI	ATGAA	1 cut(s)	104
TspRI	CASTG	4 cut(s)	22, 310, 381, 408
XapI	RAATTY	1 cut(s)	297
XspI	CTAG	2 cut(s)	198, 317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.