Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002338

Physical Location & Seq

Genomic Coordinates Reverse (-)

32479314 .. 32480061

Gene Structure 748 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG290900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGATTGGGCCCGTTCATGGAAGGCCACACTCTTCTCACTTCTCGGAGACATTCCATCTCATCTTCGTAAACTGATTGCTTTCATTTCCATTGATGGGACTTCTACAACTACTCTCATTGTTGACAGCAACACAGGAGAGCCGTTATGGAGACCTTTCCTCTACAATGAGAGCTGCCCTGATGCTTTACCGACGGTTGGTTATGATCCTGAGCTTGAATCCTATCCACCCTGGCTACTCTCTCAGCCCTATTCACGACTTTTACCTTATGTTAGAGCTCCTGGAACTTCAATCGGTCATTTGAAAGAGGACATTAGATCGGATTTTGGTACAATTTTCTTGCAATTGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0006793 GO:0006796 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019150 GO:0019200 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044262 GO:0044424 GO:0044444 GO:0044464 GO:0046835 GO:0071704 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FGGY_C FGGY_N

Protein Analysis

117

Amino Acids

13.17

Weight (kDa)

4.94

Isoelectric Point (pI)

46.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002338)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21370 AT2G21370 AT2G21370 AT2G21370
fragaria_vesca	FvH4_2g10090 FvH4_2g10090 FvH4_2g10090 FvH4_2g10090
malus_domestica	MD10G1065800.v1.1
prunus_persica	Prupe.8G087700_v2.0.a1 Prupe.8G087700_v2.0.a1
pyrus_communis	pycom10g05120
rosa_chinensis	RchiOBHm_Chr3g0496591 RchiOBHm_Chr4g0423361 RchiOBHm_Chr6g0267041
rosa_laevigata	RLG00000003987 RLG00000014047 RLG00000018837 RLG00000028975
rosa_multiflora	Rmu_sc0013804.1_g000007 Rmu_sc0030781.1_g000001 Rmu_sc0033156.1_g000001 Rmu_sc0033555.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147730 Rroxscaffold_2G00147740 Rroxscaffold_7G00201210
rosa_rugosa	Rorug01G0215500 Rorug02G0305900
rosa_samantha	Rh2BG290800 Rh2BG290900 Rh2DG285900 Rh3AG330100 Rh3CG362900 Rh3DG366000 Rh5CG284800 Rh6CG099100 Rh6CG146300 Rh6CG146400 Rh7BG254600 Rh7BG468800
rosa_wichuraiana	Rw3G028900 Rw6G013010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	200
AfaI	GTAC	1 cut(s)	331
AfiI	CCNNNNNNNGG	3 cut(s)	18, 96, 197
AgsI	TTSAA	3 cut(s)	218, 291, 304
AjnI	CCWGG	2 cut(s)	230, 280
AluBI	AGCT	3 cut(s)	174, 214, 278
AluI	AGCT	3 cut(s)	174, 214, 278
Alw21I	GWGCWC	1 cut(s)	280
Alw26I	GTCTC	2 cut(s)	42, 145
AlwI	GGATC	1 cut(s)	200
AoxI	GGCC	2 cut(s)	9, 24
ApaI	GGGCCC	1 cut(s)	13
ApeKI	GCWGC	1 cut(s)	174
AspS9I	GGNCC	2 cut(s)	9, 10
BaeGI	GKGCMC	1 cut(s)	13
BanII	GRGCYC	2 cut(s)	13, 280
Bbv12I	GWGCWC	1 cut(s)	280
BbvI	GCAGC	1 cut(s)	161
BccI	CCATC	2 cut(s)	64, 89
BceAI	ACGGC	1 cut(s)	127
BciT130I	CCWGG	2 cut(s)	232, 282
BcoDI	GTCTC	2 cut(s)	42, 145
BisI	GCNGC	1 cut(s)	175
BlsI	GCNGC	1 cut(s)	176
Bme1390I	CCNGG	2 cut(s)	232, 282
BmgT120I	GGNCC	2 cut(s)	9, 10
BmiI	GGNNCC	1 cut(s)	11
BmrFI	CCNGG	2 cut(s)	232, 282
BmsI	GCATC	1 cut(s)	172
Bpu10I	CCTNAGC	1 cut(s)	210
BsaI	GGTCTC	1 cut(s)	145
BsaJI	CCNNGG	1 cut(s)	230
Bsc4I	CCNNNNNNNGG	3 cut(s)	18, 96, 197
BseBI	CCWGG	2 cut(s)	232, 282
BseDI	CCNNGG	1 cut(s)	230
BseLI	CCNNNNNNNGG	3 cut(s)	18, 96, 197
BseMII	CTCAG	2 cut(s)	201, 257
BseSI	GKGCMC	1 cut(s)	13
BseXI	GCAGC	1 cut(s)	161
BshFI	GGCC	2 cut(s)	11, 26
BsiHKAI	GWGCWC	1 cut(s)	280
BslFI	GGGAC	1 cut(s)	112
BslI	CCNNNNNNNGG	3 cut(s)	18, 96, 197
BsmAI	GTCTC	2 cut(s)	42, 145
BsmFI	GGGAC	1 cut(s)	112
BsnI	GGCC	2 cut(s)	11, 26
Bso31I	GGTCTC	1 cut(s)	145
Bsp120I	GGGCCC	1 cut(s)	9
Bsp1286I	GDGCHC	2 cut(s)	13, 280
Bsp143I	GATC	2 cut(s)	205, 317
BspANI	GGCC	2 cut(s)	11, 26
BspCNI	CTCAG	2 cut(s)	202, 256
BspLI	GGNNCC	1 cut(s)	11
BspPI	GGATC	1 cut(s)	200
BspTNI	GGTCTC	1 cut(s)	145
BssECI	CCNNGG	1 cut(s)	230
BssMI	GATC	2 cut(s)	205, 317
Bst2UI	CCWGG	2 cut(s)	232, 282
Bst4CI	ACNGT	1 cut(s)	196
Bst6I	CTCTTC	1 cut(s)	38
BstDEI	CTNAG	2 cut(s)	210, 243
BstKTI	GATC	2 cut(s)	208, 320
BstMAI	GTCTC	2 cut(s)	42, 145
BstMBI	GATC	2 cut(s)	205, 317
BstNI	CCWGG	2 cut(s)	232, 282
BstSCI	CCNGG	2 cut(s)	230, 280
BstSLI	GKGCMC	1 cut(s)	13
BstV1I	GCAGC	1 cut(s)	161
BsuRI	GGCC	2 cut(s)	11, 26
Cfr13I	GGNCC	2 cut(s)	9, 10
Csp6I	GTAC	1 cut(s)	330
CviAII	CATG	1 cut(s)	18
CviJI	RGCY	8 cut(s)	11, 26, 142, 174, 214, 235, 247, 278
CviKI_1	RGCY	8 cut(s)	11, 26, 142, 174, 214, 235, 247, 278
CviQI	GTAC	1 cut(s)	330
DdeI	CTNAG	2 cut(s)	210, 243
DpnI	GATC	2 cut(s)	207, 319
DpnII	GATC	2 cut(s)	205, 317
Eam1104I	CTCTTC	1 cut(s)	38
EarI	CTCTTC	1 cut(s)	38
Ecl136II	GAGCTC	1 cut(s)	278
Eco24I	GRGCYC	2 cut(s)	13, 280
Eco31I	GGTCTC	1 cut(s)	145
Eco53kI	GAGCTC	1 cut(s)	278
EcoICRI	GAGCTC	1 cut(s)	278
EcoRII	CCWGG	2 cut(s)	230, 280
EcoT38I	GRGCYC	2 cut(s)	13, 280
FaeI	CATG	1 cut(s)	21
FaiI	YATR	5 cut(s)	19, 148, 204, 270, 352
FaqI	GGGAC	1 cut(s)	112
FatI	CATG	1 cut(s)	17
Fnu4HI	GCNGC	1 cut(s)	175
FriOI	GRGCYC	2 cut(s)	13, 280
Fsp4HI	GCNGC	1 cut(s)	175
GluI	GCNGC	1 cut(s)	175
HaeIII	GGCC	2 cut(s)	11, 26
Hin1II	CATG	1 cut(s)	21
HincII	GTYRAC	1 cut(s)	124
HindII	GTYRAC	1 cut(s)	124
HinfI	GANTC	1 cut(s)	218
Hpy166II	GTNNAC	2 cut(s)	71, 124
Hpy188I	TCNGA	2 cut(s)	47, 322
Hpy188III	TCNNGA	2 cut(s)	209, 255
Hpy8I	GTNNAC	2 cut(s)	71, 124
Hpy99I	CGWCG	1 cut(s)	196
HpyAV	CCTTC	1 cut(s)	16
HpyCH4III	ACNGT	1 cut(s)	196
HpyCH4V	TGCA	1 cut(s)	343
HpyF3I	CTNAG	2 cut(s)	210, 243
Hsp92II	CATG	1 cut(s)	21
Kzo9I	GATC	2 cut(s)	205, 317
LmnI	GCTCC	1 cut(s)	283
LpnPI	CCDG	7 cut(s)	120, 192, 217, 222, 244, 267, 294
Lsp1109I	GCAGC	1 cut(s)	161
LweI	GCATC	1 cut(s)	172
MalI	GATC	2 cut(s)	207, 319
MboI	GATC	2 cut(s)	205, 317
MboII	GAAGA	2 cut(s)	25, 56
MfeI	CAATTG	1 cut(s)	344
MhlI	GDGCHC	2 cut(s)	13, 280
MluCI	AATT	2 cut(s)	333, 344
MnlI	CCTC	2 cut(s)	170, 301
MspR9I	CCNGG	2 cut(s)	232, 282
MunI	CAATTG	1 cut(s)	344
MvaI	CCWGG	2 cut(s)	232, 282
NdeII	GATC	2 cut(s)	205, 317
NlaIII	CATG	1 cut(s)	21
NlaIV	GGNNCC	1 cut(s)	11
PfeI	GAWTC	1 cut(s)	218
PfoI	TCCNGGA	1 cut(s)	280
PkrI	GCNGC	1 cut(s)	176
Psp124BI	GAGCTC	1 cut(s)	280
Psp6I	CCWGG	2 cut(s)	230, 280
PspGI	CCWGG	2 cut(s)	230, 280
PspN4I	GGNNCC	1 cut(s)	11
PspOMI	GGGCCC	1 cut(s)	9
PspPI	GGNCC	2 cut(s)	9, 10
RsaI	GTAC	1 cut(s)	331
RsaNI	GTAC	1 cut(s)	330
SacI	GAGCTC	1 cut(s)	280
SatI	GCNGC	1 cut(s)	175
Sau3AI	GATC	2 cut(s)	205, 317
Sau96I	GGNCC	2 cut(s)	9, 10
ScrFI	CCNGG	2 cut(s)	232, 282
SduI	GDGCHC	2 cut(s)	13, 280
SetI	ASST	5 cut(s)	157, 176, 216, 268, 280
SfaNI	GCATC	1 cut(s)	172
Sse9I	AATT	2 cut(s)	333, 344
SstI	GAGCTC	1 cut(s)	280
StyD4I	CCNGG	2 cut(s)	230, 280
TaaI	ACNGT	1 cut(s)	196
TaqII	GACCGA	1 cut(s)	284
TasI	AATT	2 cut(s)	333, 344
TfiI	GAWTC	1 cut(s)	218
TseI	GCWGC	1 cut(s)	174
TspDTI	ATGAA	2 cut(s)	6, 73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.