Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0002338

Physical Location & Seq

Genomic Coordinates Reverse (-)

55014120 .. 55035528

Gene Structure 21409 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003987

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGTGGATGTCCAGGATTGTGCCCATGATTATGGATCATGCATTTACAGTAAATAACTATACCAGAGCTATGATCAAACTGAGAAGACCAAGAGGTCCAAGGCCAATGGCTTTTGGGAGCAATGGAGGTGAACCTGAAGTTGGGAAGCGGCTTTATTTGGGACTGGACTTTGGGACTTGTACTGCGAGAAAGAGTGAAGAAAAAATGGATTGGACCCGTTCATGGAAGGCTACACTCTTCTCACTTCTCGGAGACATTCCATCTCATCTTCGTAAACTGATTGCTTCCATTGCCATTGATGGGACTTCTGCAACTACTCTCATTGTTGACAGGGCAAGCACTGTTGTTGTCGTCGGACGGGCCTTGTCAACTCTATGTGGATCTGGGGAGATGTCGGGTCACTCAATGGTCTTCTTGTTCGTAGTCGGGGAAATCAGCGATGGTGGTTTATGCAGTGAGGAAAAGGGATCGGAGATTGTGGCGGCAGTCGAGTCTTGGTCTGTCCCTTGCGGGTTTGATCGGCGAGATGAAGAGATTCGTGTTGAGCGGTTAGAGGTTGCTGGGGTGACGGGATCGAGACAATGTGGTTGGGCTCTGATCAAACTGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0006793 GO:0006796 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019150 GO:0019200 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044262 GO:0044424 GO:0044444 GO:0044464 GO:0046835 GO:0071704 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FGGY_C FGGY_N

Protein Analysis

204

Amino Acids

22.23

Weight (kDa)

8.32

Isoelectric Point (pI)

38.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002338)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21370 AT2G21370 AT2G21370 AT2G21370
fragaria_vesca	FvH4_2g10090 FvH4_2g10090 FvH4_2g10090 FvH4_2g10090
malus_domestica	MD10G1065800.v1.1
prunus_persica	Prupe.8G087700_v2.0.a1 Prupe.8G087700_v2.0.a1
pyrus_communis	pycom10g05120
rosa_chinensis	RchiOBHm_Chr3g0496591 RchiOBHm_Chr4g0423361 RchiOBHm_Chr6g0267041
rosa_laevigata	RLG00000003987 RLG00000014047 RLG00000018837 RLG00000028975
rosa_multiflora	Rmu_sc0013804.1_g000007 Rmu_sc0030781.1_g000001 Rmu_sc0033156.1_g000001 Rmu_sc0033555.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147730 Rroxscaffold_2G00147740 Rroxscaffold_7G00201210
rosa_rugosa	Rorug01G0215500 Rorug02G0305900
rosa_samantha	Rh2BG290800 Rh2BG290900 Rh2DG285900 Rh3AG330100 Rh3CG362900 Rh3DG366000 Rh5CG284800 Rh6CG099100 Rh6CG146300 Rh6CG146400 Rh7BG254600 Rh7BG468800
rosa_wichuraiana	Rw3G028900 Rw6G013010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	93
AccBSI	CCGCTC	1 cut(s)	547
AciI	CCGC	4 cut(s)	148, 482, 510, 547
AclWI	GGATC	4 cut(s)	42, 388, 475, 580
AcuI	CTGAAG	1 cut(s)	156
AfaI	GTAC	1 cut(s)	181
AfiI	CCNNNNNNNGG	3 cut(s)	140, 222, 300
AjnI	CCWGG	1 cut(s)	11
AjuI	GAANNNNNNNTTGG	2 cut(s)	123, 155
AluBI	AGCT	1 cut(s)	68
AluI	AGCT	1 cut(s)	68
Alw26I	GTCTC	2 cut(s)	246, 571
AlwI	GGATC	4 cut(s)	42, 388, 475, 580
AoxI	GGCC	2 cut(s)	101, 360
Asp700I	GAANNNNTTC	1 cut(s)	534
AspS9I	GGNCC	3 cut(s)	95, 213, 360
AsuHPI	GGTGA	2 cut(s)	140, 577
AvaII	GGWCC	2 cut(s)	95, 213
BaeGI	GKGCMC	1 cut(s)	24
BanII	GRGCYC	1 cut(s)	595
BbsI	GAAGAC	2 cut(s)	91, 403
BccI	CCATC	3 cut(s)	268, 293, 434
BciT130I	CCWGG	1 cut(s)	13
BclI	TGATCA	2 cut(s)	72, 597
BcoDI	GTCTC	2 cut(s)	246, 571
BisI	GCNGC	2 cut(s)	149, 483
BlsI	GCNGC	2 cut(s)	150, 484
Bme1390I	CCNGG	1 cut(s)	13
Bme18I	GGWCC	2 cut(s)	95, 213
BmgT120I	GGNCC	3 cut(s)	95, 213, 360
BmiI	GGNNCC	1 cut(s)	215
BmrFI	CCNGG	1 cut(s)	13
BpiI	GAAGAC	2 cut(s)	91, 403
BsaJI	CCNNGG	1 cut(s)	98
Bsc4I	CCNNNNNNNGG	3 cut(s)	140, 222, 300
Bse1I	ACTGG	1 cut(s)	168
Bse3DI	GCAATG	2 cut(s)	127, 288
BseBI	CCWGG	1 cut(s)	13
BseDI	CCNNGG	1 cut(s)	98
BseGI	GGATG	1 cut(s)	12
BseLI	CCNNNNNNNGG	3 cut(s)	140, 222, 300
BseMI	GCAATG	2 cut(s)	127, 288
BseMII	CTCAG	1 cut(s)	71
BseNI	ACTGG	1 cut(s)	168
BseSI	GKGCMC	1 cut(s)	24
BseYI	CCCAGC	1 cut(s)	560
BshFI	GGCC	2 cut(s)	103, 362
BslFI	GGGAC	4 cut(s)	174, 187, 316, 488
BslI	CCNNNNNNNGG	3 cut(s)	140, 222, 300
BsmAI	GTCTC	2 cut(s)	246, 571
BsmFI	GGGAC	4 cut(s)	174, 187, 316, 488
BsnI	GGCC	2 cut(s)	103, 362
Bsp1286I	GDGCHC	2 cut(s)	24, 595
Bsp143I	GATC	7 cut(s)	34, 72, 380, 467, 517, 572, 597
BspACI	CCGC	4 cut(s)	148, 482, 510, 547
BspANI	GGCC	2 cut(s)	103, 362
BspCNI	CTCAG	1 cut(s)	72
BspLI	GGNNCC	1 cut(s)	215
BspPI	GGATC	4 cut(s)	42, 388, 475, 580
BsrBI	CCGCTC	1 cut(s)	547
BsrDI	GCAATG	2 cut(s)	127, 288
BsrI	ACTGG	1 cut(s)	168
BssECI	CCNNGG	1 cut(s)	98
BssMI	GATC	7 cut(s)	34, 72, 380, 467, 517, 572, 597
BssT1I	CCWWGG	1 cut(s)	98
Bst2UI	CCWGG	1 cut(s)	13
Bst4CI	ACNGT	2 cut(s)	49, 343
Bst6I	CTCTTC	2 cut(s)	242, 525
BstC8I	GCNNGC	1 cut(s)	337
BstDEI	CTNAG	1 cut(s)	80
BstF5I	GGATG	1 cut(s)	12
BstKTI	GATC	7 cut(s)	37, 75, 383, 470, 520, 575, 600
BstMAI	GTCTC	2 cut(s)	246, 571
BstMBI	GATC	7 cut(s)	34, 72, 380, 467, 517, 572, 597
BstMWI	GCNNNNNNNGC	1 cut(s)	290
BstNI	CCWGG	1 cut(s)	13
BstSCI	CCNGG	1 cut(s)	11
BstSLI	GKGCMC	1 cut(s)	24
BstV2I	GAAGAC	2 cut(s)	91, 403
BstX2I	RGATCY	1 cut(s)	380
BstXI	CCANNNNNNTGG	1 cut(s)	31
BstYI	RGATCY	1 cut(s)	380
BsuRI	GGCC	2 cut(s)	103, 362
BtgZI	GCGATG	1 cut(s)	453
BtsCI	GGATG	1 cut(s)	12
BtsI	GCAGTG	1 cut(s)	460
BtsIMutI	CAGTG	2 cut(s)	339, 460
Cac8I	GCNNGC	1 cut(s)	337
Cfr13I	GGNCC	3 cut(s)	95, 213, 360
Csp6I	GTAC	1 cut(s)	180
CviAII	CATG	3 cut(s)	25, 38, 222
CviJI	RGCY	7 cut(s)	68, 103, 110, 151, 230, 362, 593
CviKI_1	RGCY	7 cut(s)	68, 103, 110, 151, 230, 362, 593
CviQI	GTAC	1 cut(s)	180
DdeI	CTNAG	1 cut(s)	80
DpnI	GATC	7 cut(s)	36, 74, 382, 469, 519, 574, 599
DpnII	GATC	7 cut(s)	34, 72, 380, 467, 517, 572, 597
DrdI	GACNNNNNNGTC	1 cut(s)	93
DseDI	GACNNNNNNGTC	1 cut(s)	93
Eam1104I	CTCTTC	2 cut(s)	242, 525
EarI	CTCTTC	2 cut(s)	242, 525
Eco130I	CCWWGG	1 cut(s)	98
Eco24I	GRGCYC	1 cut(s)	595
Eco47I	GGWCC	2 cut(s)	95, 213
Eco57I	CTGAAG	1 cut(s)	156
EcoRII	CCWGG	1 cut(s)	11
EcoT14I	CCWWGG	1 cut(s)	98
EcoT22I	ATGCAT	1 cut(s)	43
EcoT38I	GRGCYC	1 cut(s)	595
ErhI	CCWWGG	1 cut(s)	98
FaeI	CATG	3 cut(s)	28, 41, 225
FaiI	YATR	9 cut(s)	26, 32, 39, 60, 71, 223, 376, 451, 610
FaqI	GGGAC	4 cut(s)	174, 187, 316, 488
FatI	CATG	3 cut(s)	24, 37, 221
FauI	CCCGC	1 cut(s)	503
FbaI	TGATCA	2 cut(s)	72, 597
Fnu4HI	GCNGC	2 cut(s)	149, 483
FokI	GGATG	1 cut(s)	19
FriOI	GRGCYC	1 cut(s)	595
Fsp4HI	GCNGC	2 cut(s)	149, 483
GluI	GCNGC	2 cut(s)	149, 483
GsaI	CCCAGC	1 cut(s)	564
HaeIII	GGCC	2 cut(s)	103, 362
Hin1II	CATG	3 cut(s)	28, 41, 225
HincII	GTYRAC	2 cut(s)	328, 369
HindII	GTYRAC	2 cut(s)	328, 369
HinfI	GANTC	2 cut(s)	491, 535
HphI	GGTGA	2 cut(s)	140, 577
Hpy166II	GTNNAC	4 cut(s)	131, 275, 328, 369
Hpy188I	TCNGA	4 cut(s)	251, 356, 472, 597
Hpy188III	TCNNGA	1 cut(s)	576
Hpy8I	GTNNAC	4 cut(s)	131, 275, 328, 369
Hpy99I	CGWCG	1 cut(s)	356
HpyAV	CCTTC	1 cut(s)	220
HpyCH4III	ACNGT	2 cut(s)	49, 343
HpyCH4V	TGCA	3 cut(s)	41, 311, 453
HpyF10VI	GCNNNNNNNGC	1 cut(s)	290
HpyF3I	CTNAG	1 cut(s)	80
Hsp92II	CATG	3 cut(s)	28, 41, 225
Ksp22I	TGATCA	2 cut(s)	72, 597
Kzo9I	GATC	7 cut(s)	34, 72, 380, 467, 517, 572, 597
LmnI	GCTCC	1 cut(s)	117
LpnPI	CCDG	7 cut(s)	25, 76, 147, 149, 316, 369, 546
MaeIII	GTNAC	2 cut(s)	398, 565
MalI	GATC	7 cut(s)	36, 74, 382, 469, 519, 574, 599
MbiI	CCGCTC	1 cut(s)	547
MboI	GATC	7 cut(s)	34, 72, 380, 467, 517, 572, 597
MboII	GAAGA	6 cut(s)	96, 209, 229, 260, 403, 542
MflI	RGATCY	1 cut(s)	380
MhlI	GDGCHC	2 cut(s)	24, 595
MlyI	GAGTC	1 cut(s)	500
MmeI	TCCRAC	1 cut(s)	334
MnlI	CCTC	4 cut(s)	86, 119, 451, 547
Mph1103I	ATGCAT	1 cut(s)	43
MroXI	GAANNNNTTC	1 cut(s)	534
MslI	CAYNNNNRTG	1 cut(s)	29
MspR9I	CCNGG	1 cut(s)	13
MvaI	CCWGG	1 cut(s)	13
MwoI	GCNNNNNNNGC	1 cut(s)	290
NdeII	GATC	7 cut(s)	34, 72, 380, 467, 517, 572, 597
NlaIII	CATG	3 cut(s)	28, 41, 225
NlaIV	GGNNCC	1 cut(s)	215
NmuCI	GTSAC	2 cut(s)	398, 565
NsiI	ATGCAT	1 cut(s)	43
PdmI	GAANNNNTTC	1 cut(s)	534
PfeI	GAWTC	1 cut(s)	535
PfoI	TCCNGGA	1 cut(s)	11
PkrI	GCNGC	2 cut(s)	150, 484
PleI	GAGTC	1 cut(s)	499
PpsI	GAGTC	1 cut(s)	499
Psp6I	CCWGG	1 cut(s)	11
PspFI	CCCAGC	1 cut(s)	560
PspGI	CCWGG	1 cut(s)	11
PspN4I	GGNNCC	1 cut(s)	215
PspPI	GGNCC	3 cut(s)	95, 213, 360
PsuI	RGATCY	1 cut(s)	380
RsaI	GTAC	1 cut(s)	181
RsaNI	GTAC	1 cut(s)	180
RseI	CAYNNNNRTG	1 cut(s)	29
SatI	GCNGC	2 cut(s)	149, 483
Sau3AI	GATC	7 cut(s)	34, 72, 380, 467, 517, 572, 597
Sau96I	GGNCC	3 cut(s)	95, 213, 360
SchI	GAGTC	1 cut(s)	500
ScrFI	CCNGG	1 cut(s)	13
SduI	GDGCHC	2 cut(s)	24, 595
SetI	ASST	5 cut(s)	70, 97, 130, 136, 558
SinI	GGWCC	2 cut(s)	95, 213
SmiMI	CAYNNNNRTG	1 cut(s)	29
SsiI	CCGC	4 cut(s)	148, 482, 510, 547
StyD4I	CCNGG	1 cut(s)	11
StyI	CCWWGG	1 cut(s)	98
TaaI	ACNGT	2 cut(s)	49, 343
TaqI	TCGA	2 cut(s)	489, 575
TatI	WGTACW	1 cut(s)	179
TauI	GCSGC	2 cut(s)	151, 485
TfiI	GAWTC	1 cut(s)	535
TscAI	CASTG	2 cut(s)	346, 460
TseFI	GTSAC	2 cut(s)	398, 565
Tsp45I	GTSAC	2 cut(s)	398, 565
TspDTI	ATGAA	2 cut(s)	210, 543
TspRI	CASTG	2 cut(s)	346, 460
VpaK11BI	GGWCC	2 cut(s)	95, 213
XmnI	GAANNNNTTC	1 cut(s)	534
Zsp2I	ATGCAT	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.