Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0002338

Physical Location & Seq

Genomic Coordinates Reverse (-)

45840803 .. 45841183

Gene Structure 381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG366000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGCCCACTATTGATTATTTAGCAAATAGTCTGAAAGTTTGTATCCAGGTAACTTCTTTGGGTTCAACACTTGCCATAAAACTGCTGAGCACTACTACGATTGAGGATGCACGGTTTGGGGTGTATAGTCATCACCTTGATGATAAGTGGCTTGTTGGAGTTGCTTCAAATACTGGTGGAGCAGTTCTTAGACAAATTTTCACTGACAAGCAACTGGAGAAATTGAGTGAACAAATTGATCCCATGGAAGCTTGTTGTGTTTTCTGGTGGCAGGTTAAGCTTGTTAAGTGCCTTGTGCAAAATATTGTGGTTGATATATCCTTCAATCAATTAAGAGGGCTATGTACGTTATGCTTTCTTGATCTGGTAGTCTTCCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0006793 GO:0006796 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019150 GO:0019200 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044262 GO:0044424 GO:0044444 GO:0044464 GO:0046835 GO:0071704 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FGGY_C FGGY_N

Protein Analysis

126

Amino Acids

14.13

Weight (kDa)

5.82

Isoelectric Point (pI)

25.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002338)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21370 AT2G21370 AT2G21370 AT2G21370
fragaria_vesca	FvH4_2g10090 FvH4_2g10090 FvH4_2g10090 FvH4_2g10090
malus_domestica	MD10G1065800.v1.1
prunus_persica	Prupe.8G087700_v2.0.a1 Prupe.8G087700_v2.0.a1
pyrus_communis	pycom10g05120
rosa_chinensis	RchiOBHm_Chr3g0496591 RchiOBHm_Chr4g0423361 RchiOBHm_Chr6g0267041
rosa_laevigata	RLG00000003987 RLG00000014047 RLG00000018837 RLG00000028975
rosa_multiflora	Rmu_sc0013804.1_g000007 Rmu_sc0030781.1_g000001 Rmu_sc0033156.1_g000001 Rmu_sc0033555.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147730 Rroxscaffold_2G00147740 Rroxscaffold_7G00201210
rosa_rugosa	Rorug01G0215500 Rorug02G0305900
rosa_samantha	Rh2BG290800 Rh2BG290900 Rh2DG285900 Rh3AG330100 Rh3CG362900 Rh3DG366000 Rh5CG284800 Rh6CG099100 Rh6CG146300 Rh6CG146400 Rh7BG254600 Rh7BG468800
rosa_wichuraiana	Rw3G028900 Rw6G013010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	262
AclWI	GGATC	1 cut(s)	233
AcsI	RAATTY	1 cut(s)	195
AfaI	GTAC	1 cut(s)	346
AgsI	TTSAA	3 cut(s)	66, 168, 325
AjnI	CCWGG	1 cut(s)	45
AluBI	AGCT	2 cut(s)	251, 280
AluI	AGCT	2 cut(s)	251, 280
Alw21I	GWGCWC	1 cut(s)	92
AlwI	GGATC	1 cut(s)	233
ApoI	RAATTY	1 cut(s)	195
AsuHPI	GGTGA	1 cut(s)	125
BbsI	GAAGAC	1 cut(s)	364
Bbv12I	GWGCWC	1 cut(s)	92
BciT130I	CCWGG	1 cut(s)	47
BciVI	GTATCC	1 cut(s)	53
BfuAI	ACCTGC	1 cut(s)	262
BfuI	GTATCC	1 cut(s)	53
BlpI	GCTNAGC	1 cut(s)	86
Bme1390I	CCNGG	1 cut(s)	47
BmrFI	CCNGG	1 cut(s)	47
BmsI	GCATC	1 cut(s)	97
BpiI	GAAGAC	1 cut(s)	364
BpmI	CTGGAG	1 cut(s)	236
Bpu1102I	GCTNAGC	1 cut(s)	86
BsaJI	CCNNGG	1 cut(s)	243
Bse1I	ACTGG	2 cut(s)	178, 219
BseBI	CCWGG	1 cut(s)	47
BseDI	CCNNGG	1 cut(s)	243
BseGI	GGATG	1 cut(s)	112
BseMII	CTCAG	1 cut(s)	77
BseNI	ACTGG	2 cut(s)	178, 219
BsiHKAI	GWGCWC	1 cut(s)	92
Bsp1286I	GDGCHC	1 cut(s)	92
Bsp143I	GATC	2 cut(s)	238, 361
Bsp1720I	GCTNAGC	1 cut(s)	86
Bsp19I	CCATGG	1 cut(s)	243
BspCNI	CTCAG	1 cut(s)	78
BspMI	ACCTGC	1 cut(s)	262
BspPI	GGATC	1 cut(s)	233
BsrI	ACTGG	2 cut(s)	178, 219
BssECI	CCNNGG	1 cut(s)	243
BssMI	GATC	2 cut(s)	238, 361
BssT1I	CCWWGG	1 cut(s)	243
Bst2UI	CCWGG	1 cut(s)	47
Bst4CI	ACNGT	1 cut(s)	114
BstDEI	CTNAG	2 cut(s)	86, 188
BstDSI	CCRYGG	1 cut(s)	243
BstF5I	GGATG	1 cut(s)	112
BstKTI	GATC	2 cut(s)	241, 364
BstMBI	GATC	2 cut(s)	238, 361
BstMWI	GCNNNNNNNGC	1 cut(s)	277
BstNI	CCWGG	1 cut(s)	47
BstSCI	CCNGG	1 cut(s)	45
BstV2I	GAAGAC	1 cut(s)	364
BsuI	GTATCC	1 cut(s)	53
BtgI	CCRYGG	1 cut(s)	243
BtsCI	GGATG	1 cut(s)	112
BtsIMutI	CAGTG	1 cut(s)	201
BveI	ACCTGC	1 cut(s)	262
Csp6I	GTAC	1 cut(s)	345
CviAII	CATG	1 cut(s)	244
CviJI	RGCY	4 cut(s)	151, 251, 280, 340
CviKI_1	RGCY	4 cut(s)	151, 251, 280, 340
CviQI	GTAC	1 cut(s)	345
DdeI	CTNAG	2 cut(s)	86, 188
DpnI	GATC	2 cut(s)	240, 363
DpnII	GATC	2 cut(s)	238, 361
Eco130I	CCWWGG	1 cut(s)	243
EcoRII	CCWGG	1 cut(s)	45
EcoT14I	CCWWGG	1 cut(s)	243
ErhI	CCWWGG	1 cut(s)	243
FaeI	CATG	1 cut(s)	247
FaiI	YATR	6 cut(s)	77, 126, 245, 317, 343, 352
FatI	CATG	1 cut(s)	243
FokI	GGATG	1 cut(s)	119
GsuI	CTGGAG	1 cut(s)	236
Hin1II	CATG	1 cut(s)	247
HindIII	AAGCTT	2 cut(s)	249, 278
HphI	GGTGA	1 cut(s)	125
Hpy166II	GTNNAC	1 cut(s)	230
Hpy188I	TCNGA	1 cut(s)	33
Hpy188III	TCNNGA	1 cut(s)	359
Hpy8I	GTNNAC	1 cut(s)	230
HpyAV	CCTTC	1 cut(s)	331
HpyCH4III	ACNGT	1 cut(s)	114
HpyCH4IV	ACGT	1 cut(s)	347
HpyCH4V	TGCA	2 cut(s)	110, 298
HpyF10VI	GCNNNNNNNGC	1 cut(s)	277
HpyF3I	CTNAG	2 cut(s)	86, 188
HpySE526I	ACGT	1 cut(s)	347
Hsp92II	CATG	1 cut(s)	247
Kzo9I	GATC	2 cut(s)	238, 361
LmnI	GCTCC	1 cut(s)	179
LpnPI	CCDG	7 cut(s)	32, 59, 159, 200, 250, 257, 350
LweI	GCATC	1 cut(s)	97
MaeII	ACGT	1 cut(s)	347
MaeIII	GTNAC	1 cut(s)	49
MalI	GATC	2 cut(s)	240, 363
MboI	GATC	2 cut(s)	238, 361
MboII	GAAGA	1 cut(s)	364
MhlI	GDGCHC	1 cut(s)	92
MluCI	AATT	4 cut(s)	195, 221, 234, 329
MmeI	TCCRAC	1 cut(s)	136
MnlI	CCTC	2 cut(s)	97, 329
MseI	TTAA	3 cut(s)	276, 285, 332
MslI	CAYNNNNRTG	1 cut(s)	138
MspR9I	CCNGG	1 cut(s)	47
MvaI	CCWGG	1 cut(s)	47
MwoI	GCNNNNNNNGC	1 cut(s)	277
NcoI	CCATGG	1 cut(s)	243
NdeII	GATC	2 cut(s)	238, 361
NlaIII	CATG	1 cut(s)	247
Psp6I	CCWGG	1 cut(s)	45
PspGI	CCWGG	1 cut(s)	45
RsaI	GTAC	1 cut(s)	346
RsaNI	GTAC	1 cut(s)	345
RseI	CAYNNNNRTG	1 cut(s)	138
SaqAI	TTAA	3 cut(s)	276, 285, 332
Sau3AI	GATC	2 cut(s)	238, 361
ScrFI	CCNGG	1 cut(s)	47
SduI	GDGCHC	1 cut(s)	92
SetI	ASST	6 cut(s)	51, 138, 253, 276, 282, 350
SfaNI	GCATC	1 cut(s)	97
SmiMI	CAYNNNNRTG	1 cut(s)	138
Sse9I	AATT	4 cut(s)	195, 221, 234, 329
SspI	AATATT	1 cut(s)	304
StyD4I	CCNGG	1 cut(s)	45
StyI	CCWWGG	1 cut(s)	243
TaaI	ACNGT	1 cut(s)	114
TaiI	ACGT	1 cut(s)	350
TasI	AATT	4 cut(s)	195, 221, 234, 329
Tru1I	TTAA	3 cut(s)	276, 285, 332
Tru9I	TTAA	3 cut(s)	276, 285, 332
TscAI	CASTG	1 cut(s)	208
TspRI	CASTG	1 cut(s)	208
XapI	RAATTY	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.