Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002338

Physical Location & Seq

Genomic Coordinates Reverse (-)

47766649 .. 47769131

Gene Structure 2483 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45892

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGCTTTTGGGAGCAGTGGAGGTGAACTTGAAGTTGGGGAGTGGCTTTATCTGGGACTAGACTTTGGGACTTCTGGAGCGAGAAAGAGTGAAGAAAAAATGGATTGGGCCCATTCATGGAAGGCCACACTCTTCTCACTTCTCGGAGACATTCCATCTCATCTTCGTAAACTGGTTGCTTTCATTTCCATTGATGGCACTTCTACAACTACTCTCATTGTTGACAGCAACACAAGAGAGCCATTATGGAGACCTTTCCTCTACAATGAGAGCTGCCCTGATGCTTTACCAATGTGGGAGAATGATGATCCAAATAAAAAATCTGCACTATTGTTGCACCAAGCAGATTGGCTTTTGTGGCTTCTTCGTGGAAAACTCGGAGTGTCTGATTATAATAATGCTTTGAAGTCAAAATGCTGTTTTATAAGTTGTCTTGCATTTGTAATTCCCAGAGATCTTGTTGCTTCCAATGTACACATGCCCACTATTGATTATTTAGCAAATAGTCTAAAAGTTTGTATCCAGGTAACTTCTTTGGGTTCAACACTTGCCATAAAACTGCTGAGCACTACTAGGATTGAGGATGCACGGTTTGGGGTGTATAGTCATCACCTTGATGATAAGTGGCTTGTTGGAGGTGCTTTAAATACTGGTAGAGCAGTTCTTAGACAAAATTTCACTGACAAGAAACTGGAGAAATTGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0006793 GO:0006796 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019150 GO:0019200 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044262 GO:0044424 GO:0044444 GO:0044464 GO:0046835 GO:0071704 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FGGY_C FGGY_N

Protein Analysis

235

Amino Acids

26.21

Weight (kDa)

6.59

Isoelectric Point (pI)

24.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002338)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21370 AT2G21370 AT2G21370 AT2G21370
fragaria_vesca	FvH4_2g10090 FvH4_2g10090 FvH4_2g10090 FvH4_2g10090
malus_domestica	MD10G1065800.v1.1
prunus_persica	Prupe.8G087700_v2.0.a1 Prupe.8G087700_v2.0.a1
pyrus_communis	pycom10g05120
rosa_chinensis	RchiOBHm_Chr3g0496591 RchiOBHm_Chr4g0423361 RchiOBHm_Chr6g0267041
rosa_laevigata	RLG00000003987 RLG00000014047 RLG00000018837 RLG00000028975
rosa_multiflora	Rmu_sc0013804.1_g000007 Rmu_sc0030781.1_g000001 Rmu_sc0033156.1_g000001 Rmu_sc0033555.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147730 Rroxscaffold_2G00147740 Rroxscaffold_7G00201210
rosa_rugosa	Rorug01G0215500 Rorug02G0305900
rosa_samantha	Rh2BG290800 Rh2BG290900 Rh2DG285900 Rh3AG330100 Rh3CG362900 Rh3DG366000 Rh5CG284800 Rh6CG099100 Rh6CG146300 Rh6CG146400 Rh7BG254600 Rh7BG468800
rosa_wichuraiana	Rw3G028900 Rw6G013010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	393, 425
AclWI	GGATC	1 cut(s)	302
AcsI	RAATTY	1 cut(s)	673
AfaI	GTAC	1 cut(s)	474
AfiI	CCNNNNNNNGG	1 cut(s)	117
AgsI	TTSAA	3 cut(s)	32, 406, 543
AjnI	CCWGG	1 cut(s)	522
AjuI	GAANNNNNNNTTGG	2 cut(s)	18, 50
AluBI	AGCT	1 cut(s)	273
AluI	AGCT	1 cut(s)	273
Alw21I	GWGCWC	1 cut(s)	569
Alw26I	GTCTC	2 cut(s)	141, 244
AlwI	GGATC	1 cut(s)	302
AoxI	GGCC	2 cut(s)	108, 123
ApaI	GGGCCC	1 cut(s)	112
ApeKI	GCWGC	1 cut(s)	273
ApoI	RAATTY	1 cut(s)	673
AspS9I	GGNCC	2 cut(s)	108, 109
AsuHPI	GGTGA	2 cut(s)	35, 602
BaeGI	GKGCMC	1 cut(s)	112
BanII	GRGCYC	1 cut(s)	112
Bbv12I	GWGCWC	1 cut(s)	569
BbvI	GCAGC	1 cut(s)	260
BccI	CCATC	2 cut(s)	163, 188
BciT130I	CCWGG	1 cut(s)	524
BciVI	GTATCC	1 cut(s)	530
BcoDI	GTCTC	2 cut(s)	141, 244
BfaI	CTAG	2 cut(s)	59, 573
BfuI	GTATCC	1 cut(s)	530
BglII	AGATCT	1 cut(s)	454
BisI	GCNGC	1 cut(s)	274
BlpI	GCTNAGC	1 cut(s)	563
BlsI	GCNGC	1 cut(s)	275
Bme1390I	CCNGG	1 cut(s)	524
BmgT120I	GGNCC	2 cut(s)	108, 109
BmiI	GGNNCC	1 cut(s)	110
BmrFI	CCNGG	1 cut(s)	524
BmsI	GCATC	2 cut(s)	271, 574
BpmI	CTGGAG	1 cut(s)	96
Bpu1102I	GCTNAGC	1 cut(s)	563
BsaI	GGTCTC	1 cut(s)	244
Bsc4I	CCNNNNNNNGG	1 cut(s)	117
Bse1I	ACTGG	3 cut(s)	177, 655, 696
BseBI	CCWGG	1 cut(s)	524
BseGI	GGATG	1 cut(s)	589
BseLI	CCNNNNNNNGG	1 cut(s)	117
BseMII	CTCAG	1 cut(s)	554
BseNI	ACTGG	3 cut(s)	177, 655, 696
BseSI	GKGCMC	1 cut(s)	112
BseXI	GCAGC	1 cut(s)	260
BsgI	GTGCAG	1 cut(s)	309
BshFI	GGCC	2 cut(s)	110, 125
BsiHKAI	GWGCWC	1 cut(s)	569
BslFI	GGGAC	2 cut(s)	69, 82
BslI	CCNNNNNNNGG	1 cut(s)	117
BsmAI	GTCTC	2 cut(s)	141, 244
BsmFI	GGGAC	2 cut(s)	69, 82
BsnI	GGCC	2 cut(s)	110, 125
Bso31I	GGTCTC	1 cut(s)	244
Bsp120I	GGGCCC	1 cut(s)	108
Bsp1286I	GDGCHC	2 cut(s)	112, 569
Bsp1407I	TGTACA	1 cut(s)	472
Bsp143I	GATC	2 cut(s)	307, 454
Bsp1720I	GCTNAGC	1 cut(s)	563
BspANI	GGCC	2 cut(s)	110, 125
BspCNI	CTCAG	1 cut(s)	555
BspLI	GGNNCC	1 cut(s)	110
BspPI	GGATC	1 cut(s)	302
BspTNI	GGTCTC	1 cut(s)	244
BsrGI	TGTACA	1 cut(s)	472
BsrI	ACTGG	3 cut(s)	177, 655, 696
BssMI	GATC	2 cut(s)	307, 454
Bst2UI	CCWGG	1 cut(s)	524
Bst4CI	ACNGT	1 cut(s)	591
Bst6I	CTCTTC	1 cut(s)	137
BstAUI	TGTACA	1 cut(s)	472
BstDEI	CTNAG	2 cut(s)	563, 665
BstF5I	GGATG	1 cut(s)	589
BstKTI	GATC	2 cut(s)	310, 457
BstMAI	GTCTC	2 cut(s)	141, 244
BstMBI	GATC	2 cut(s)	307, 454
BstMWI	GCNNNNNNNGC	1 cut(s)	358
BstNI	CCWGG	1 cut(s)	524
BstNSI	RCATGY	1 cut(s)	481
BstSCI	CCNGG	1 cut(s)	522
BstSLI	GKGCMC	1 cut(s)	112
BstV1I	GCAGC	1 cut(s)	260
BstX2I	RGATCY	1 cut(s)	454
BstYI	RGATCY	1 cut(s)	454
BsuI	GTATCC	1 cut(s)	530
BsuRI	GGCC	2 cut(s)	110, 125
BtsCI	GGATG	1 cut(s)	589
BtsI	GCAGTG	1 cut(s)	22
BtsIMutI	CAGTG	2 cut(s)	22, 678
Cfr13I	GGNCC	2 cut(s)	108, 109
Csp6I	GTAC	1 cut(s)	473
CviAII	CATG	2 cut(s)	117, 478
CviJI	RGCY	9 cut(s)	5, 46, 110, 125, 241, 273, 352, 361, 628
CviKI_1	RGCY	9 cut(s)	5, 46, 110, 125, 241, 273, 352, 361, 628
CviQI	GTAC	1 cut(s)	473
DdeI	CTNAG	2 cut(s)	563, 665
DpnI	GATC	2 cut(s)	309, 456
DpnII	GATC	2 cut(s)	307, 454
DraI	TTTAAA	1 cut(s)	645
Eam1104I	CTCTTC	1 cut(s)	137
EarI	CTCTTC	1 cut(s)	137
Eco24I	GRGCYC	1 cut(s)	112
Eco31I	GGTCTC	1 cut(s)	244
EcoRII	CCWGG	1 cut(s)	522
EcoT38I	GRGCYC	1 cut(s)	112
FaeI	CATG	2 cut(s)	120, 481
FaiI	YATR	7 cut(s)	118, 247, 393, 425, 479, 554, 603
FaqI	GGGAC	2 cut(s)	69, 82
FatI	CATG	2 cut(s)	116, 477
Fnu4HI	GCNGC	1 cut(s)	274
FokI	GGATG	1 cut(s)	596
FriOI	GRGCYC	1 cut(s)	112
Fsp4HI	GCNGC	1 cut(s)	274
FspBI	CTAG	2 cut(s)	59, 573
GluI	GCNGC	1 cut(s)	274
GsuI	CTGGAG	1 cut(s)	96
HaeIII	GGCC	2 cut(s)	110, 125
Hin1II	CATG	2 cut(s)	120, 481
HincII	GTYRAC	1 cut(s)	223
HindII	GTYRAC	1 cut(s)	223
HphI	GGTGA	2 cut(s)	35, 602
Hpy166II	GTNNAC	4 cut(s)	26, 170, 223, 475
Hpy188I	TCNGA	3 cut(s)	146, 380, 388
Hpy188III	TCNNGA	1 cut(s)	75
Hpy8I	GTNNAC	4 cut(s)	26, 170, 223, 475
HpyAV	CCTTC	1 cut(s)	115
HpyCH4III	ACNGT	1 cut(s)	591
HpyCH4V	TGCA	4 cut(s)	326, 337, 437, 587
HpyF10VI	GCNNNNNNNGC	1 cut(s)	358
HpyF3I	CTNAG	2 cut(s)	563, 665
Hsp92II	CATG	2 cut(s)	120, 481
Kzo9I	GATC	2 cut(s)	307, 454
LmnI	GCTCC	2 cut(s)	12, 77
LpnPI	CCDG	9 cut(s)	38, 60, 158, 291, 463, 509, 536, 636, 677
Lsp1109I	GCAGC	1 cut(s)	260
LweI	GCATC	2 cut(s)	271, 574
MaeI	CTAG	2 cut(s)	59, 573
MaeIII	GTNAC	1 cut(s)	526
MalI	GATC	2 cut(s)	309, 456
MboI	GATC	2 cut(s)	307, 454
MboII	GAAGA	4 cut(s)	104, 124, 155, 356
MflI	RGATCY	1 cut(s)	454
MhlI	GDGCHC	2 cut(s)	112, 569
MluCI	AATT	3 cut(s)	444, 673, 698
MmeI	TCCRAC	1 cut(s)	613
MnlI	CCTC	4 cut(s)	14, 269, 574, 629
MseI	TTAA	2 cut(s)	644, 706
MslI	CAYNNNNRTG	1 cut(s)	615
MspR9I	CCNGG	1 cut(s)	524
MvaI	CCWGG	1 cut(s)	524
MwoI	GCNNNNNNNGC	1 cut(s)	358
NdeII	GATC	2 cut(s)	307, 454
NlaIII	CATG	2 cut(s)	120, 481
NlaIV	GGNNCC	1 cut(s)	110
NspI	RCATGY	1 cut(s)	481
PkrI	GCNGC	1 cut(s)	275
PsiI	TTATAA	2 cut(s)	393, 425
Psp6I	CCWGG	1 cut(s)	522
PspGI	CCWGG	1 cut(s)	522
PspN4I	GGNNCC	1 cut(s)	110
PspOMI	GGGCCC	1 cut(s)	108
PspPI	GGNCC	2 cut(s)	108, 109
PsuI	RGATCY	1 cut(s)	454
RsaI	GTAC	1 cut(s)	474
RsaNI	GTAC	1 cut(s)	473
RseI	CAYNNNNRTG	1 cut(s)	615
SaqAI	TTAA	2 cut(s)	644, 706
SatI	GCNGC	1 cut(s)	274
Sau3AI	GATC	2 cut(s)	307, 454
Sau96I	GGNCC	2 cut(s)	108, 109
ScrFI	CCNGG	1 cut(s)	524
SduI	GDGCHC	2 cut(s)	112, 569
SetI	ASST	6 cut(s)	25, 256, 275, 528, 615, 640
SfaNI	GCATC	2 cut(s)	271, 574
SmiMI	CAYNNNNRTG	1 cut(s)	615
Sse9I	AATT	3 cut(s)	444, 673, 698
SspMI	CTAG	2 cut(s)	59, 573
StyD4I	CCNGG	1 cut(s)	522
TaaI	ACNGT	1 cut(s)	591
TasI	AATT	3 cut(s)	444, 673, 698
TatI	WGTACW	1 cut(s)	472
Tru1I	TTAA	2 cut(s)	644, 706
Tru9I	TTAA	2 cut(s)	644, 706
TscAI	CASTG	2 cut(s)	22, 685
TseI	GCWGC	1 cut(s)	273
TspDTI	ATGAA	2 cut(s)	105, 172
TspRI	CASTG	2 cut(s)	22, 685
XapI	RAATTY	1 cut(s)	673
XceI	RCATGY	1 cut(s)	481
XspI	CTAG	2 cut(s)	59, 573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.