Rroxscaffold_7G00201210

FGGY family of carbohydrate kinases, C-terminal domain

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Reverse (-)
48730529 .. 48734217
3689 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_7G00201210.1

Sequence Viewer

Length: 1548 bp
ATGGTCCTCCATATCCCATCTTTTCTTTTTTCATTTCCTTTAGTAGCTACAGCCATTGCTATCACTCAAGCTGTGTTAAAAGTAGTGTTTGATCATCATGCTGACGCTGCAGGGTATCCTAGTCCAAGAAGGCAATCTCCACCAACTGGGTTGCACTTGAACAGAGCTCTGATCAAACTGAGAAGACCAAGAGGTCCAAGGCCAATGACTTTTGGGAGCAATGGGGGTGAACCTGAAGTCGGGGAGCGGCTTTATCTGGGACTGGACTTTGGGACTTCTGGAGCGAGGTTTGCCCTTATCGATAAACGAGGGATAATTCATGCTGAGGGAAAGAGAGAATACCCTCCTTTTATGCATTGTGATATAGTCATGACTCATGAGACAGAATTCCAGCAAAAAATGGATTGGGCCCGTTCATGGAAGGCCACACTCTTCTTACTTCTTGGAGACATTCCATCTCATCTTCGTAAACTGATTGCTTCCATTTCCATTGATGGGACTTCTGCAACTACTCTCATTGTTGACAGCAACACAGGAGAGCCGTTATGGAGACCTTTCCTCTACAATGAGAGCTGCCCTGATGCTTTACCGACGGTTAAATCCATTGCTCCTCCAAACCATACAGTCTGCTCTGGTTCCTCTACTCTGTGCAAGCTTGTCTCCTGGTGGGAGAATGATGATCCAAATAAAAAATCTGCACTACTGTTGCACCAAGCAGATTGGCTTTTGTGGCTTCTTCATGGAAAACTCGGAGTGTCTGATTATAATAATTCTCTGAAGGTTGGTTATGATCCTGAGCTTGAATCCTATCCACCCTGGCTACTCTCTCAGCCCTATTCACAACTTTTACCTTCTGTTAGAGCTCCTGGAACTTCAATCGGTCATTTGAAAGAGGACATTAGATTGGATTTTGGTTTTCCAAGTGATTGTGCTGTATGCACAGGAACCACTGATAGTATAGCAGCTTTTTTAGCAGCTCGTGCAACACAACCTGGGAAAGCTGTAACTTCTTTGGGTTCAACACTTGCCATAAAACTGCTGAGCACTACTAGGATTGAGGATGCACGGTTTGGGGTGTATAGTCATCGCCTTGATGATAAGTGGCTTGTTGGAGGTGCTTCAAATACTGGTGGAGCAGTTCTTAGACAAATTTTCACTGACGAGCAACTTGAGAAATTGAGTGAACAGATTGATCCCATGGAAGCTTCTCCTCTAGACTACTACCCACTGCAATCAGTTGGTGAGAGATTTCCAGTGGCAGATCCGAATATGGCTCCAAGATTACACCCACGTCCAGAAAGTGAGGCGGAGTTTTTGCATGGGATTCTTGAATCCATTGCGCGTATAGAGGCAAAAGCTTACAACTTACTCAAGGAACTAGGCGCAACCCAAGTTGATGAAGTGTTCACAGCCGGAGGTGGTGCGAGAAATGAGAAATGGACAAAGATTAGAGAGAGAGTACTTGGTTTGCCTGTAAGTTCTGCAATTCAAACCGAGGCTGCATATGGAGCTGCTTTGTTGGCTTTGAGGGGAGTCCATGAGAAATGA

Protein Analysis

515

Amino Acids

56.59

Weight (kDa)

6.36

Isoelectric Point (pI)

39.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FGGY_N PF00370 84 - 324 4e-09 FGGY family of carbohydrate kinases, N-terminal domain
FGGY_C PF02782 359 - 510 8.2e-11 FGGY family of carbohydrate kinases, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 765
AasI GACNNNNNNGTC 1 cut(s) 192
AccB7I CCANNNNNTGG 1 cut(s) 146
AccBSI CCGCTC 1 cut(s) 247
AccII CGCG 1 cut(s) 1342
AciI CCGC 2 cut(s) 247, 1307
AclWI GGATC 4 cut(s) 674, 785, 1187, 1256
AcsI RAATTY 2 cut(s) 386, 1149
AcuI CTGAAG 2 cut(s) 255, 797
AfaI GTAC 1 cut(s) 1461
AfiI CCNNNNNNNGG 4 cut(s) 146, 239, 417, 495
AgsI TTSAA 8 cut(s) 160, 803, 876, 889, 1020, 1122, 1331, 1490
AjiI CACGTC 1 cut(s) 1292
AjnI CCWGG 4 cut(s) 662, 815, 865, 991
Alw21I GWGCWC 3 cut(s) 169, 865, 1046
Alw26I GTCTC 4 cut(s) 374, 441, 544, 664
AlwI GGATC 4 cut(s) 674, 785, 1187, 1256
AoxI GGCC 3 cut(s) 200, 408, 423
ApaI GGGCCC 1 cut(s) 412
ApeKI GCWGC 6 cut(s) 107, 573, 962, 974, 1499, 1511
ApoI RAATTY 2 cut(s) 386, 1149
AspLEI GCGC 2 cut(s) 1342, 1385
AspS9I GGNCC 4 cut(s) 4, 194, 408, 409
AsuHPI GGTGA 2 cut(s) 239, 1253
AvaII GGWCC 2 cut(s) 4, 194
BaeGI GKGCMC 1 cut(s) 412
BanII GRGCYC 3 cut(s) 169, 412, 865
BauI CACGAG 1 cut(s) 978
BbsI GAAGAC 1 cut(s) 190
Bbv12I GWGCWC 3 cut(s) 169, 865, 1046
BbvCI CCTCAGC 1 cut(s) 324
BbvI GCAGC 6 cut(s) 94, 560, 974, 986, 1486, 1498
BccI CCATC 3 cut(s) 25, 463, 488
BceAI ACGGC 1 cut(s) 526
BciT130I CCWGG 4 cut(s) 664, 817, 867, 993
BciVI GTATCC 1 cut(s) 126
BclI TGATCA 2 cut(s) 91, 171
BcoDI GTCTC 4 cut(s) 374, 441, 544, 664
BfaI CTAG 4 cut(s) 120, 1050, 1214, 1379
BfmI CTRYAG 2 cut(s) 48, 108
BfuI GTATCC 1 cut(s) 126
BisI GCNGC 7 cut(s) 108, 248, 574, 963, 975, 1500, 1512
BlpI GCTNAGC 1 cut(s) 1040
BlsI GCNGC 7 cut(s) 109, 249, 575, 964, 976, 1501, 1513
BmcAI AGTACT 1 cut(s) 1461
Bme1390I CCNGG 4 cut(s) 664, 817, 867, 993
Bme18I GGWCC 2 cut(s) 4, 194
BmgBI CACGTC 1 cut(s) 1292
BmgT120I GGNCC 4 cut(s) 4, 194, 408, 409
BmiI GGNNCC 4 cut(s) 410, 637, 946, 1275
BmrFI CCNGG 4 cut(s) 664, 817, 867, 993
BmrI ACTGGG 1 cut(s) 156
BmsI GCATC 2 cut(s) 571, 1051
BmuI ACTGGG 1 cut(s) 156
BpiI GAAGAC 1 cut(s) 190
BpmI CTGGAG 1 cut(s) 300
Bpu10I CCTNAGC 2 cut(s) 324, 795
Bpu1102I GCTNAGC 1 cut(s) 1040
BpuEI CTTGAG 3 cut(s) 51, 1190, 1355
Bsa29I ATCGAT 1 cut(s) 300
BsaI GGTCTC 1 cut(s) 544
BsaJI CCNNGG 5 cut(s) 197, 815, 992, 1197, 1494
Bsc4I CCNNNNNNNGG 4 cut(s) 146, 239, 417, 495
Bse1I ACTGG 4 cut(s) 151, 267, 1132, 1253
Bse3DI GCAATG 4 cut(s) 54, 226, 603, 1335
BseBI CCWGG 4 cut(s) 664, 817, 867, 993
BseCI ATCGAT 1 cut(s) 300
BseDI CCNNGG 5 cut(s) 197, 815, 992, 1197, 1494
BseGI GGATG 1 cut(s) 1066
BseLI CCNNNNNNNGG 4 cut(s) 146, 239, 417, 495
BseMI GCAATG 4 cut(s) 54, 226, 603, 1335
BseMII CTCAG 5 cut(s) 170, 315, 786, 842, 1031
BseNI ACTGG 4 cut(s) 151, 267, 1132, 1253
BseRI GAGGAG 2 cut(s) 600, 1200
BseSI GKGCMC 1 cut(s) 412
BseXI GCAGC 6 cut(s) 94, 560, 974, 986, 1486, 1498
BsgI GTGCAG 1 cut(s) 681
Bsh1236I CGCG 1 cut(s) 1342
BshFI GGCC 3 cut(s) 202, 410, 425
BshVI ATCGAT 1 cut(s) 300
BsiHKAI GWGCWC 3 cut(s) 169, 865, 1046
BsiSI CCGG 1 cut(s) 1413
BslFI GGGAC 3 cut(s) 273, 286, 511
BslI CCNNNNNNNGG 4 cut(s) 146, 239, 417, 495
BsmAI GTCTC 4 cut(s) 374, 441, 544, 664
BsmFI GGGAC 3 cut(s) 273, 286, 511
BsnI GGCC 3 cut(s) 202, 410, 425
Bso31I GGTCTC 1 cut(s) 544
Bsp120I GGGCCC 1 cut(s) 408
Bsp1286I GDGCHC 4 cut(s) 169, 412, 865, 1046
Bsp143I GATC 6 cut(s) 91, 171, 679, 790, 1192, 1261
Bsp1720I GCTNAGC 1 cut(s) 1040
Bsp19I CCATGG 1 cut(s) 1197
BspACI CCGC 2 cut(s) 247, 1307
BspANI GGCC 3 cut(s) 202, 410, 425
BspCNI CTCAG 5 cut(s) 171, 316, 787, 841, 1032
BspDI ATCGAT 1 cut(s) 300
BspFNI CGCG 1 cut(s) 1342
BspHI TCATGA 2 cut(s) 369, 376
BspLI GGNNCC 4 cut(s) 410, 637, 946, 1275
BspMAI CTGCAG 1 cut(s) 112
BspPI GGATC 4 cut(s) 674, 785, 1187, 1256
BspTNI GGTCTC 1 cut(s) 544
BsrBI CCGCTC 1 cut(s) 247
BsrDI GCAATG 4 cut(s) 54, 226, 603, 1335
BsrI ACTGG 4 cut(s) 151, 267, 1132, 1253
BssECI CCNNGG 5 cut(s) 197, 815, 992, 1197, 1494
BssMI GATC 6 cut(s) 91, 171, 679, 790, 1192, 1261
BssSI CACGAG 1 cut(s) 978
BssT1I CCWWGG 2 cut(s) 197, 1197
Bst2BI CACGAG 1 cut(s) 978
Bst2UI CCWGG 4 cut(s) 664, 817, 867, 993
Bst4CI ACNGT 4 cut(s) 595, 625, 705, 1068
Bst6I CTCTTC 1 cut(s) 437
BstAPI GCANNNNNTGC 1 cut(s) 980
BstC8I GCNNGC 1 cut(s) 653
BstDEI CTNAG 6 cut(s) 179, 324, 795, 828, 1040, 1142
BstDSI CCRYGG 1 cut(s) 1197
BstF5I GGATG 1 cut(s) 1066
BstFNI CGCG 1 cut(s) 1342
BstHHI GCGC 2 cut(s) 1342, 1385
BstKTI GATC 6 cut(s) 94, 174, 682, 793, 1195, 1264
BstMAI GTCTC 4 cut(s) 374, 441, 544, 664
BstMBI GATC 6 cut(s) 91, 171, 679, 790, 1192, 1261
BstMWI GCNNNNNNNGC 7 cut(s) 107, 290, 730, 971, 980, 1508, 1520
BstNI CCWGG 4 cut(s) 664, 817, 867, 993
BstSCI CCNGG 4 cut(s) 662, 815, 865, 991
BstSFI CTRYAG 2 cut(s) 48, 108
BstSLI GKGCMC 1 cut(s) 412
BstUI CGCG 1 cut(s) 1342
BstV1I GCAGC 6 cut(s) 94, 560, 974, 986, 1486, 1498
BstV2I GAAGAC 1 cut(s) 190
BstX2I RGATCY 1 cut(s) 1261
BstYI RGATCY 1 cut(s) 1261
Bsu15I ATCGAT 1 cut(s) 300
BsuI GTATCC 1 cut(s) 126
BsuRI GGCC 3 cut(s) 202, 410, 425
BsuTUI ATCGAT 1 cut(s) 300
BtgI CCRYGG 1 cut(s) 1197
BtgZI GCGATG 1 cut(s) 1070
BtrI CACGTC 1 cut(s) 1292
BtsCI GGATG 1 cut(s) 1066
BtsI GCAGTG 1 cut(s) 1226
BtsIMutI CAGTG 4 cut(s) 948, 1155, 1226, 1260
Cac8I GCNNGC 1 cut(s) 653
CciI TCATGA 2 cut(s) 369, 376
CfoI GCGC 2 cut(s) 1342, 1385
Cfr13I GGNCC 4 cut(s) 4, 194, 408, 409
ClaI ATCGAT 1 cut(s) 300
CseI GACGC 1 cut(s) 113
Csp6I GTAC 1 cut(s) 1460
CviAII CATG 9 cut(s) 98, 320, 370, 377, 417, 740, 1198, 1319, 1538
CviQI GTAC 1 cut(s) 1460
DdeI CTNAG 6 cut(s) 179, 324, 795, 828, 1040, 1142
DpnI GATC 6 cut(s) 93, 173, 681, 792, 1194, 1263
DpnII GATC 6 cut(s) 91, 171, 679, 790, 1192, 1261
DrdI GACNNNNNNGTC 1 cut(s) 192
DseDI GACNNNNNNGTC 1 cut(s) 192
Eam1104I CTCTTC 1 cut(s) 437
EarI CTCTTC 1 cut(s) 437
EciI GGCGGA 1 cut(s) 1322
Ecl136II GAGCTC 2 cut(s) 167, 863
Eco130I CCWWGG 2 cut(s) 197, 1197
Eco24I GRGCYC 3 cut(s) 169, 412, 865
Eco31I GGTCTC 1 cut(s) 544
Eco47I GGWCC 2 cut(s) 4, 194
Eco53kI GAGCTC 2 cut(s) 167, 863
Eco57I CTGAAG 2 cut(s) 255, 797
EcoICRI GAGCTC 2 cut(s) 167, 863
EcoRI GAATTC 1 cut(s) 386
EcoRII CCWGG 4 cut(s) 662, 815, 865, 991
EcoT14I CCWWGG 2 cut(s) 197, 1197
EcoT22I ATGCAT 1 cut(s) 357
EcoT38I GRGCYC 3 cut(s) 169, 412, 865
ErhI CCWWGG 2 cut(s) 197, 1197
FaeI CATG 9 cut(s) 101, 323, 373, 380, 420, 743, 1201, 1322, 1541
FaqI GGGAC 3 cut(s) 273, 286, 511
FatI CATG 9 cut(s) 97, 319, 369, 376, 416, 739, 1197, 1318, 1537
FauNDI CATATG 1 cut(s) 1504
FbaI TGATCA 2 cut(s) 91, 171
Fnu4HI GCNGC 7 cut(s) 108, 248, 574, 963, 975, 1500, 1512
FokI GGATG 1 cut(s) 1073
FriOI GRGCYC 3 cut(s) 169, 412, 865
Fsp4HI GCNGC 7 cut(s) 108, 248, 574, 963, 975, 1500, 1512
FspBI CTAG 4 cut(s) 120, 1050, 1214, 1379
GlaI GCGC 2 cut(s) 1341, 1384
GluI GCNGC 7 cut(s) 108, 248, 574, 963, 975, 1500, 1512
GsuI CTGGAG 1 cut(s) 300
HaeIII GGCC 3 cut(s) 202, 410, 425
HapII CCGG 1 cut(s) 1413
HgaI GACGC 1 cut(s) 113
HhaI GCGC 2 cut(s) 1342, 1385
Hin1II CATG 9 cut(s) 101, 323, 373, 380, 420, 743, 1201, 1322, 1541
Hin6I GCGC 2 cut(s) 1340, 1383
HinP1I GCGC 2 cut(s) 1340, 1383
HincII GTYRAC 1 cut(s) 523
HindII GTYRAC 1 cut(s) 523
HindIII AAGCTT 3 cut(s) 653, 1203, 1356
HinfI GANTC 5 cut(s) 373, 803, 1324, 1331, 1533
HpaII CCGG 1 cut(s) 1413
HphI GGTGA 2 cut(s) 239, 1253
Hpy166II GTNNAC 5 cut(s) 230, 470, 523, 1184, 1407
Hpy188I TCNGA 5 cut(s) 171, 752, 760, 777, 1266
Hpy188III TCNNGA 7 cut(s) 279, 370, 377, 794, 1214, 1295, 1328
Hpy8I GTNNAC 5 cut(s) 230, 470, 523, 1184, 1407
Hpy99I CGWCG 1 cut(s) 595
HpyAV CCTTC 4 cut(s) 123, 415, 772, 861
HpyCH4III ACNGT 4 cut(s) 595, 625, 705, 1068
HpyCH4IV ACGT 1 cut(s) 1291
HpyF10VI GCNNNNNNNGC 7 cut(s) 107, 290, 730, 971, 980, 1508, 1520
HpyF3I CTNAG 6 cut(s) 179, 324, 795, 828, 1040, 1142
HpySE526I ACGT 1 cut(s) 1291
Hsp92II CATG 9 cut(s) 101, 323, 373, 380, 420, 743, 1201, 1322, 1541
HspAI GCGC 2 cut(s) 1340, 1383
Ksp22I TGATCA 2 cut(s) 91, 171
Kzo9I GATC 6 cut(s) 91, 171, 679, 790, 1192, 1261
LmnI GCTCC 8 cut(s) 216, 244, 281, 613, 868, 1133, 1279, 1508
Lsp1109I GCAGC 6 cut(s) 94, 560, 974, 986, 1486, 1498
LweI GCATC 2 cut(s) 571, 1051
MaeI CTAG 4 cut(s) 120, 1050, 1214, 1379
MaeII ACGT 1 cut(s) 1291
MaeIII GTNAC 1 cut(s) 1003
MalI GATC 6 cut(s) 93, 173, 681, 792, 1194, 1263
MbiI CCGCTC 1 cut(s) 247
MboI GATC 6 cut(s) 91, 171, 679, 790, 1192, 1261
MboII GAAGA 4 cut(s) 195, 424, 455, 728
MflI RGATCY 1 cut(s) 1261
MhlI GDGCHC 4 cut(s) 169, 412, 865, 1046
MluCI AATT 6 cut(s) 315, 386, 769, 1149, 1175, 1485
MlyI GAGTC 2 cut(s) 367, 1542
MmeI TCCRAC 1 cut(s) 1090
Mph1103I ATGCAT 1 cut(s) 357
MseI TTAA 2 cut(s) 77, 597
MspI CCGG 1 cut(s) 1413
MspR9I CCNGG 4 cut(s) 664, 817, 867, 993
MvaI CCWGG 4 cut(s) 664, 817, 867, 993
MvnI CGCG 1 cut(s) 1342
MwoI GCNNNNNNNGC 7 cut(s) 107, 290, 730, 971, 980, 1508, 1520
NcoI CCATGG 1 cut(s) 1197
NdeI CATATG 1 cut(s) 1504
NdeII GATC 6 cut(s) 91, 171, 679, 790, 1192, 1261
NlaIII CATG 9 cut(s) 101, 323, 373, 380, 420, 743, 1201, 1322, 1541
NlaIV GGNNCC 4 cut(s) 410, 637, 946, 1275
NsiI ATGCAT 1 cut(s) 357
PagI TCATGA 2 cut(s) 369, 376
PfeI GAWTC 3 cut(s) 803, 1324, 1331
PflMI CCANNNNNTGG 1 cut(s) 146
PfoI TCCNGGA 1 cut(s) 865
PkrI GCNGC 7 cut(s) 109, 249, 575, 964, 976, 1501, 1513
PleI GAGTC 2 cut(s) 367, 1541
PpsI GAGTC 2 cut(s) 367, 1541
PsiI TTATAA 1 cut(s) 765
Psp124BI GAGCTC 2 cut(s) 169, 865
Psp6I CCWGG 4 cut(s) 662, 815, 865, 991
PspGI CCWGG 4 cut(s) 662, 815, 865, 991
PspN4I GGNNCC 4 cut(s) 410, 637, 946, 1275
PspOMI GGGCCC 1 cut(s) 408
PspPI GGNCC 4 cut(s) 4, 194, 408, 409
PstI CTGCAG 1 cut(s) 112
PsuI RGATCY 1 cut(s) 1261
RsaI GTAC 1 cut(s) 1461
RsaNI GTAC 1 cut(s) 1460
SacI GAGCTC 2 cut(s) 169, 865
SaqAI TTAA 2 cut(s) 77, 597
SatI GCNGC 7 cut(s) 108, 248, 574, 963, 975, 1500, 1512
Sau3AI GATC 6 cut(s) 91, 171, 679, 790, 1192, 1261
Sau96I GGNCC 4 cut(s) 4, 194, 408, 409
ScaI AGTACT 1 cut(s) 1461
SchI GAGTC 2 cut(s) 367, 1542
ScrFI CCNGG 4 cut(s) 664, 817, 867, 993
SduI GDGCHC 4 cut(s) 169, 412, 865, 1046
SfaNI GCATC 2 cut(s) 571, 1051
SfcI CTRYAG 2 cut(s) 48, 108
SinI GGWCC 2 cut(s) 4, 194
SmlI CTYRAG 3 cut(s) 66, 1169, 1370
SmoI CTYRAG 3 cut(s) 66, 1169, 1370
Sse9I AATT 6 cut(s) 315, 386, 769, 1149, 1175, 1485
SsiI CCGC 2 cut(s) 247, 1307
SspMI CTAG 4 cut(s) 120, 1050, 1214, 1379
SstI GAGCTC 2 cut(s) 169, 865
StyD4I CCNGG 4 cut(s) 662, 815, 865, 991
StyI CCWWGG 2 cut(s) 197, 1197
TaaI ACNGT 4 cut(s) 595, 625, 705, 1068
TaiI ACGT 1 cut(s) 1294
TaqI TCGA 1 cut(s) 300
TaqII GACCGA 1 cut(s) 869
TasI AATT 6 cut(s) 315, 386, 769, 1149, 1175, 1485
TatI WGTACW 1 cut(s) 1459
TauI GCSGC 1 cut(s) 250
TfiI GAWTC 3 cut(s) 803, 1324, 1331
Tru1I TTAA 2 cut(s) 77, 597
Tru9I TTAA 2 cut(s) 77, 597
TscAI CASTG 4 cut(s) 955, 1162, 1233, 1260
TseI GCWGC 6 cut(s) 107, 573, 962, 974, 1499, 1511
TspDTI ATGAA 5 cut(s) 21, 308, 405, 728, 1413
TspRI CASTG 4 cut(s) 955, 1162, 1233, 1260
Van91I CCANNNNNTGG 1 cut(s) 146
VpaK11BI GGWCC 2 cut(s) 4, 194
XapI RAATTY 2 cut(s) 386, 1149
XbaI TCTAGA 1 cut(s) 1213
XspI CTAG 4 cut(s) 120, 1050, 1214, 1379
ZrmI AGTACT 1 cut(s) 1461
Zsp2I ATGCAT 1 cut(s) 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.