Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002338

Physical Location & Seq

Genomic Coordinates Forward (+)

30774412 .. 30778099

Gene Structure 3688 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0215500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3558 bp

ATGGCTCTGTTCCGAGGTACCAACTCTTCTTATCCATGTAGCTATCACGTGTTCTTGAGCTTCAGAGGTGAAGACACCCGAAAGAACTTCACTGATCACCTCTACACGGCCCTTGTCAATGCCGGATTTCATACTTTCAGGGATGACCCTGAACTCGAGAGAGGGGAGAATATCAAGGAAAAGCTTGAGAATGCCATTCGACTGTCGCGGAGTTCTGTGATTGTGTTTTCGAAAGACTACACCTCTTCCAGATGGTGTCTGGACGAGCTTGTCATGATCCTTGAACGCAAGAGGACCTCCGATCATGTCGTGTTACCGGTTTTCTACGACGTTAATCCATCTCAACTGAGGAAGAAGGCAGAAAGCCTTGTGAGGAGGCACAGTGGAGTTCTTGCAAAAGCATTTGCCAGACTTAAAAAGAACAAAAAAAAGCAATCGCTGGAGAAACTGAGTAGGTGGACGGAAGCACTTATTGAAGTTACAGATCTAGCAGGCCTGGTGTTAGAAAATCAAGCTGACGGGCACGAGTCCAAGTTCATCCAAAAGATTGTTACAGAGATTCAAGACAAGCTAGCTCGTGTGCCTCTGACCGATGTCGAGGAGATGTTACAGAAGAAGTTGTTGTTTATTAACCCTTACCTCGATGATGCCGAGGGGAAGCAACTGAACAACCCAACTGTGAAGGCATGGTTCAATGAGCTTAAAGAAGCTGTCTATGATACCGAGGACCTATTGCAGGAGATCAAGACAGAAGCATTAAGACAAAAGATGGAACCCGAATCTGGAAGTAGCTCAAGTAAGGTACAAGACCTCAGCTCTAGTCTTCCATCTCATGCTTTTGACTCAACATTAATTTACCCCAGGGTAAAGGAAGCTCTTAATAGACTAGATTCCATTATGGAGAAGAGAAAAGATGTCTTGGGTTTGGAATCAAGTGCTGGATGCTGGGTATCGCAAACACTACAGTCAACTTCTTTGCTCGAAGACTCTGGTGTGTGTGGTAGAGATGACGAGAAGGAGAAACTTATTGAATTGTTGCTATCAGATGATGAGAGTGGCAATAAGATAAGTGTGATTCCTATTGTGGGTATGGGTGGGATCGGAAAGACCACCCTTGCCCGGCTTTTGTACAACGATGTTAGAGTTGAACAACATTTTGACATCCAAGCATGGGCTTCTGTTTCTGAAAAATTTGATGTTCTTCGGATCTCACAACAAATTTATGAGTCCCTGACTTTAGATGCTTGCAACATTGGGAACTTAGATCTACTTCAGTTAAAATTGAAGGCGGCTTTGAAGGGAAAAATGATTTTCCTCGTTCTTGATGACATGTGGAACAAGAATTATACTGAATGGGAGGTCTTAAGGCGTTCTTTCCAATTTGGAGCACATGGAAGTAAGATTATTGTCACAACACGCAATCAAGATGTTGCATGTATGGTGGGTACTCTTGAAACTCACTATCTCATGCCAATGCCTGAGGAAGATGGCTGGCGATTATTTGAAAAACATGCCTTCAAAAATACAGGTGTTGGTGCTCGCACACATCTTGGAGAAATCGGTAGACAAATTGTTCGAAAGTGCAAGGGTCTTCCTTTGGCTATTAAGTCCCTTGCGGGTCTCCTATGTTCTAAATCAAATGTGGGTGAATGGGAAACTATATTGAACAGTGAACTCTGGGAGTTGCCTTTGGAGAGTGACATTCTGCCATCTCTTTGGTTGAGTTATATGTACCTGCCTTCACAACTCAAACATTGTTTTGGATGTTGTTCGATATTTCCTAAGAACTATGAGTTCAGCACATCAGAATTGGTTTACTTGTGGAAGGCTGAAGATCTATTGCAACCTAAAAAAAACAAAACTATAGACGAAATCGGAGAAGATTACTTCAATGATCTAATCTCAATGTCATTTTTTCAAGTTTCATCAAGTTCAGATCAATATTTCATGCATGACCTTATCAATGATTTAGCAAGCTTTGTATCAGGAAAATTTTGTTTAAGGTGGAAGGGCAGTGATTCAACCAACAATTTGAGCAAGACTCGTCACTTTTCATATTTTCGGTTATATCATGATGAGGCTGAGATATTTGAGGCTTTGCAGCAAGCTGAACGTTTGCACACCTTTCTACCATTAGATCCATATTCGTGCATGAAGTCGTCGGGCATAAGTCTCTACAAGGCGAACAAAGGACTCTACGAGGCATTGCCAAAGTTTCAATGTTTAAGAATGCTCAAGTTATCAGGGTACAATTCCTTAGAATTGCCTGATTCAATTAACAACTTGAAACATCTTAAGCACTTGGACTTGTCTTCCAGTTCCATCAAAAAGTTACCTGATACAATTTGTACTTTGTATAACTTGCAAGTATTGTTGTTGTCAAACTGTCGAGTCCTTACCAAACTGCCAGCCAACTTGGGAAGATTGATCAACTTGAGCCATCTGGATATTGAAAATTGTAAAAACTTGAAAAAGATGCCACCGTATATGGGTAAGTTGAAAGACCTCCAGATGCTACCAGAGTTTGTGCTAGACAAACACACTGCTGTGGATAATTTGGCAGAGTTAAAGAAGCTTGAAAAATTGCGTGGAAGACTTTGTATCTCAGGGCTTGTGCATAGCTGCGGTTTGGAGGCCTACATACTGAGGGACAAGAAGTTTCTTACGGAACTGGTTTTGGATTGGGGACGAACGCCTTGGGGACGAAGGCATGTAAGTAAAGAAAACAATAATACTGTAGAAGAAAGAGAAGTGCTTGAGAAGCTCCAACCTCACCTGAACCTGGAAAGGCTTACAATTGAACATTATGGAGGCAAAATGTTTCCAGGTTGGTCAGAATATTATTTTTCCTCTGCTCTTGTTTCTCTTAAACTTGATTATTGTCAGAATTGTATCTCCTTGCCACCATTGGGACAGCTACCTTCCCTCAGAGAGCTTCATATAGAATGGTTGAGTGCGTGGCAAGAATGGTCTGATGTTGGAGGTGACAATAATGAAGGTGGGGTTTTTCCTAATCTTGAGAAGCTTGAAGTAAAATTCTGTCACAATCTTACCGGGAGATTAGCGTCAGACAGCCTCCCATCTCTTGAGTCTTTGGAGGTATGGGATTGCCCAGAATTCGAATGTTTTCCGGAAGATGGATTCCCGTCAAAGCTAAAATCACTTGCGATCTGGGGCTGTAAGAGAATGCAGAATCTGAATAAGGGTCTCCGAACACTCACCTCTCTTGAAATATTGAAACTTAATTTTGCTAAATTAGATTGGTTTGCGGAGGAGCGGTTTCCCAGCACTCTCACATATCTATGGATCTTCCGTCTGAATTGTGAGACCATCGACGGCGCCAAGTGGTTTGGCCATCTCAACTCTCTTCAATCCTTGAGGATATGGAATTGCCCAGCGCTCCGGTGCTTGCCAGAAAGTGGGCTACCCACTTCTCTTTCTTTTCTAGAAATCTATCAATGTCCTTTGCTTCAGAAACGGTGCCAAAGAGAGACGGGTGAAGATTGGCCCAAGATTGCTCACATCAACCGCATACTTATCGATATGGTAATGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0006793 GO:0006796 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019150 GO:0019200 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044262 GO:0044424 GO:0044444 GO:0044464 GO:0046835 GO:0071704 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FGGY_C FGGY_N

Protein Analysis

1185

Amino Acids

135.81

Weight (kDa)

6.4

Isoelectric Point (pI)

49.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	15 - 197	9.8e-43	TIR domain
TIR_2	PF13676	17 - 116	1.1e-16	TIR domain
Rx_N	PF18052	201 - 262	2.4e-15	Rx N-terminal domain
NB-ARC	PF00931	336 - 509	5.4e-34	NB-ARC domain
WHD_DRP	PF23559	592 - 658	5.1e-23	Disease resistance protein Winged helix domain
LRR_14	PF23598	728 - 1035	1e-28	Leucine-rich repeat region
LRR_R13L1-DRL21	PF25019	853 - 982	4.4e-30	R13L1/DRL21 LRRs

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002338)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21370 AT2G21370 AT2G21370 AT2G21370
fragaria_vesca	FvH4_2g10090 FvH4_2g10090 FvH4_2g10090 FvH4_2g10090
malus_domestica	MD10G1065800.v1.1
prunus_persica	Prupe.8G087700_v2.0.a1 Prupe.8G087700_v2.0.a1
pyrus_communis	pycom10g05120
rosa_chinensis	RchiOBHm_Chr3g0496591 RchiOBHm_Chr4g0423361 RchiOBHm_Chr6g0267041
rosa_laevigata	RLG00000003987 RLG00000014047 RLG00000018837 RLG00000028975
rosa_multiflora	Rmu_sc0013804.1_g000007 Rmu_sc0030781.1_g000001 Rmu_sc0033156.1_g000001 Rmu_sc0033555.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147730 Rroxscaffold_2G00147740 Rroxscaffold_7G00201210
rosa_rugosa	Rorug01G0215500 Rorug02G0305900
rosa_samantha	Rh2BG290800 Rh2BG290900 Rh2DG285900 Rh3AG330100 Rh3CG362900 Rh3DG366000 Rh5CG284800 Rh6CG099100 Rh6CG146300 Rh6CG146400 Rh7BG254600 Rh7BG468800
rosa_wichuraiana	Rw3G028900 Rw6G013010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	269
Acc36I	ACCTGC	1 cut(s)	1743
Acc65I	GGTACC	1 cut(s)	17
AccB1I	GGYRCC	3 cut(s)	17, 3338, 3480
AccB7I	CCANNNNNTGG	1 cut(s)	3419
AccBSI	CCGCTC	1 cut(s)	3277
AccI	GTMKAC	1 cut(s)	1564
AccII	CGCG	1 cut(s)	208
AccIII	TCCGGA	1 cut(s)	3130
AciI	CCGC	7 cut(s)	208, 1289, 1616, 2625, 3269, 3277, 3529
AclI	AACGTT	1 cut(s)	2113
AclWI	GGATC	5 cut(s)	271, 1106, 1214, 2132, 3314
AcoI	YGGCCR	1 cut(s)	3352
AcsI	RAATTY	5 cut(s)	1190, 1218, 1991, 3035, 3116
AcuI	CTGAAG	4 cut(s)	46, 1256, 1851, 3455
AcvI	CACGTG	1 cut(s)	49
AcyI	GRCGYC	1 cut(s)	3339
AfaI	GTAC	7 cut(s)	19, 804, 1130, 1447, 1733, 2249, 2350
AfeI	AGCGCT	1 cut(s)	3399
AflII	CTTAAG	2 cut(s)	1363, 2294
AflIII	ACRYGT	2 cut(s)	48, 1329
AgeI	ACCGGT	1 cut(s)	316
AjnI	CCWGG	4 cut(s)	495, 860, 2781, 2824
AleI	CACNNNNGTG	1 cut(s)	2546
Alw21I	GWGCWC	2 cut(s)	1390, 1540
Alw26I	GTCTC	5 cut(s)	1625, 2177, 3212, 3320, 3485
AlwI	GGATC	5 cut(s)	271, 1106, 1214, 2132, 3314
AlwNI	CAGNNNCTG	1 cut(s)	3196
Ama87I	CYCGRG	1 cut(s)	155
Aor13HI	TCCGGA	1 cut(s)	3130
Aor51HI	AGCGCT	1 cut(s)	3399
AoxI	GGCC	5 cut(s)	108, 493, 2634, 3352, 3506
ApeKI	GCWGC	2 cut(s)	2101, 2622
ApoI	RAATTY	5 cut(s)	1190, 1218, 1991, 3035, 3116
ArsI	GACNNNNNNTTYG	2 cut(s)	1557, 1589
AseI	ATTAAT	1 cut(s)	851
AsiGI	ACCGGT	1 cut(s)	316
Asp700I	GAANNNNTTC	1 cut(s)	3126
Asp718I	GGTACC	1 cut(s)	17
AspLEI	GCGC	2 cut(s)	3341, 3400
AspS9I	GGNCC	4 cut(s)	109, 294, 727, 3507
AsuC2I	CCSGG	2 cut(s)	1120, 3055
AsuHPI	GGTGA	7 cut(s)	80, 89, 1658, 2765, 2996, 3211, 3509
AsuII	TTCGAA	3 cut(s)	230, 1576, 3120
AsuNHI	GCTAGC	1 cut(s)	571
AvaI	CYCGRG	1 cut(s)	155
AvaII	GGWCC	2 cut(s)	294, 727
AxyI	CCTNAGG	1 cut(s)	1479
BaeGI	GKGCMC	1 cut(s)	525
BalI	TGGCCA	1 cut(s)	3354
BanI	GGYRCC	3 cut(s)	17, 3338, 3480
BarI	GAAGNNNNNNTAC	2 cut(s)	10, 42
BauI	CACGAG	2 cut(s)	524, 576
BbrPI	CACGTG	1 cut(s)	49
BbsI	GAAGAC	6 cut(s)	78, 815, 990, 1583, 2304, 2599
Bbv12I	GWGCWC	2 cut(s)	1390, 1540
BbvCI	CCTCAGC	1 cut(s)	812
BbvI	GCAGC	2 cut(s)	2113, 2609
BceAI	ACGGC	2 cut(s)	123, 3352
BcgI	CGANNNNNNTGC	2 cut(s)	3520, 3554
BciT130I	CCWGG	4 cut(s)	497, 862, 2783, 2826
BclI	TGATCA	2 cut(s)	94, 2427
BcnI	CCSGG	2 cut(s)	1120, 3055
BcoDI	GTCTC	5 cut(s)	1625, 2177, 3212, 3320, 3485
BfaI	CTAG	6 cut(s)	488, 572, 819, 887, 2531, 3446
BfmI	CTRYAG	3 cut(s)	962, 1863, 2736
BfoI	RGCGCY	2 cut(s)	3342, 3401
BfrI	CTTAAG	2 cut(s)	1363, 2294
BfuAI	ACCTGC	1 cut(s)	1743
BglII	AGATCT	3 cut(s)	484, 1264, 1834
BisI	GCNGC	3 cut(s)	1290, 2102, 2623
BlsI	GCNGC	3 cut(s)	1291, 2103, 2624
Bme1390I	CCNGG	6 cut(s)	497, 862, 1120, 2783, 2826, 3055
Bme18I	GGWCC	2 cut(s)	294, 727
BmeT110I	CYCGRG	1 cut(s)	155
BmgT120I	GGNCC	4 cut(s)	109, 294, 727, 3507
BmiI	GGNNCC	4 cut(s)	19, 774, 3340, 3482
BmrFI	CCNGG	6 cut(s)	497, 862, 1120, 2783, 2826, 3055
BmsI	GCATC	5 cut(s)	637, 932, 1231, 2466, 2502
BmtI	GCTAGC	1 cut(s)	575
BoxI	GACNNNNGTC	1 cut(s)	593
BpiI	GAAGAC	6 cut(s)	78, 815, 990, 1583, 2304, 2599
BplI	GAGNNNNNCTC	2 cut(s)	2026, 2058
BpmI	CTGGAG	2 cut(s)	461, 2492
Bpu10I	CCTNAGC	1 cut(s)	812
Bpu14I	TTCGAA	3 cut(s)	230, 1576, 3120
BpuEI	CTTGAG	9 cut(s)	76, 206, 778, 2219, 2455, 2777, 3038, 3107, 3397
BpuMI	CCSGG	2 cut(s)	1120, 3055
Bsa29I	ATCGAT	1 cut(s)	3540
BsaAI	YACGTR	1 cut(s)	49
BsaHI	GRCGYC	1 cut(s)	3339
BsaI	GGTCTC	3 cut(s)	1625, 3212, 3320
BsaJI	CCNNGG	6 cut(s)	13, 651, 723, 860, 861, 2696
BsaWI	WCCGGW	3 cut(s)	316, 3130, 3402
BsaXI	ACNNNNNCTCC	4 cut(s)	367, 397, 3263, 3293
Bse118I	RCCGGY	1 cut(s)	316
Bse1I	ACTGG	2 cut(s)	2316, 2676
Bse21I	CCTNAGG	1 cut(s)	1479
Bse3DI	GCAATG	1 cut(s)	2204
BseAI	TCCGGA	1 cut(s)	3130
BseBI	CCWGG	4 cut(s)	497, 862, 2783, 2826
BseCI	ATCGAT	1 cut(s)	3540
BseDI	CCNNGG	6 cut(s)	13, 651, 723, 860, 861, 2696
BseGI	GGATG	5 cut(s)	148, 537, 947, 1161, 1769
BseMI	GCAATG	1 cut(s)	2204
BseMII	CTCAG	8 cut(s)	338, 440, 826, 1470, 2073, 2619, 2636, 2941
BseNI	ACTGG	2 cut(s)	2316, 2676
BseRI	GAGGAG	3 cut(s)	388, 614, 3287
BseSI	GKGCMC	1 cut(s)	525
BseXI	GCAGC	2 cut(s)	2113, 2609
BseYI	CCCAGC	3 cut(s)	945, 3284, 3394
Bsh1236I	CGCG	1 cut(s)	208
BshFI	GGCC	5 cut(s)	110, 495, 2636, 3354, 3508
BshNI	GGYRCC	3 cut(s)	17, 3338, 3480
BshTI	ACCGGT	1 cut(s)	316
BshVI	ATCGAT	1 cut(s)	3540
BsiHKAI	GWGCWC	2 cut(s)	1390, 1540
BsiHKCI	CYCGRG	1 cut(s)	155
BsiSI	CCGG	6 cut(s)	123, 317, 1120, 3054, 3131, 3403
BslFI	GGGAC	6 cut(s)	1213, 1594, 2663, 2700, 2715, 2925
BsmAI	GTCTC	5 cut(s)	1625, 2177, 3212, 3320, 3485
BsmBI	CGTCTC	1 cut(s)	3485
BsmFI	GGGAC	6 cut(s)	1213, 1594, 2663, 2700, 2715, 2925
BsmI	GAATGC	3 cut(s)	196, 2235, 3192
BsnI	GGCC	5 cut(s)	110, 495, 2636, 3354, 3508
Bso31I	GGTCTC	3 cut(s)	1625, 3212, 3320
BsoBI	CYCGRG	1 cut(s)	155
Bsp119I	TTCGAA	3 cut(s)	230, 1576, 3120
Bsp1286I	GDGCHC	3 cut(s)	525, 1390, 1540
Bsp13I	TCCGGA	1 cut(s)	3130
Bsp1407I	TGTACA	1 cut(s)	1128
BspACI	CCGC	7 cut(s)	208, 1289, 1616, 2625, 3269, 3277, 3529
BspANI	GGCC	5 cut(s)	110, 495, 2636, 3354, 3508
BspCNI	CTCAG	8 cut(s)	339, 441, 825, 1471, 2074, 2618, 2637, 2940
BspDI	ATCGAT	1 cut(s)	3540
BspEI	TCCGGA	1 cut(s)	3130
BspFNI	CGCG	1 cut(s)	208
BspHI	TCATGA	2 cut(s)	273, 2071
BspLI	GGNNCC	4 cut(s)	19, 774, 3340, 3482
BspMI	ACCTGC	1 cut(s)	1743
BspOI	GCTAGC	1 cut(s)	575
BspPI	GGATC	5 cut(s)	271, 1106, 1214, 2132, 3314
BspT104I	TTCGAA	3 cut(s)	230, 1576, 3120
BspT107I	GGYRCC	3 cut(s)	17, 3338, 3480
BspTI	CTTAAG	2 cut(s)	1363, 2294
BspTNI	GGTCTC	3 cut(s)	1625, 3212, 3320
BsrBI	CCGCTC	1 cut(s)	3277
BsrDI	GCAATG	1 cut(s)	2204
BsrFI	RCCGGY	1 cut(s)	316
BsrGI	TGTACA	1 cut(s)	1128
BsrI	ACTGG	2 cut(s)	2316, 2676
BssAI	RCCGGY	1 cut(s)	316
BssECI	CCNNGG	6 cut(s)	13, 651, 723, 860, 861, 2696
BssNI	GRCGYC	1 cut(s)	3339
BssSI	CACGAG	2 cut(s)	524, 576
BssT1I	CCWWGG	1 cut(s)	2696
Bst2BI	CACGAG	2 cut(s)	524, 576
Bst2UI	CCWGG	4 cut(s)	497, 862, 2783, 2826
Bst4CI	ACNGT	9 cut(s)	204, 383, 679, 966, 1670, 2387, 2484, 2737, 3480
Bst6I	CTCTTC	4 cut(s)	31, 250, 899, 3372
BstACI	GRCGYC	1 cut(s)	3339
BstAFI	CTTAAG	2 cut(s)	1363, 2294
BstAUI	TGTACA	1 cut(s)	1128
BstBAI	YACGTR	1 cut(s)	49
BstBI	TTCGAA	3 cut(s)	230, 1576, 3120
BstC8I	GCNNGC	9 cut(s)	493, 573, 1246, 1493, 1540, 1975, 2106, 2409, 3410
BstENI	CCTNNNNNAGG	1 cut(s)	734
BstF5I	GGATG	5 cut(s)	148, 537, 947, 1161, 1769
BstFNI	CGCG	1 cut(s)	208
BstH2I	RGCGCY	2 cut(s)	3342, 3401
BstHHI	GCGC	2 cut(s)	3341, 3400
BstMAI	GTCTC	5 cut(s)	1625, 2177, 3212, 3320, 3485
BstMWI	GCNNNNNNNGC	1 cut(s)	2761
BstNI	CCWGG	4 cut(s)	497, 862, 2783, 2826
BstNSI	RCATGY	4 cut(s)	1333, 1437, 1514, 2714
BstPAI	GACNNNNGTC	1 cut(s)	593
BstSCI	CCNGG	6 cut(s)	495, 860, 1118, 2781, 2824, 3053
BstSFI	CTRYAG	3 cut(s)	962, 1863, 2736
BstSLI	GKGCMC	1 cut(s)	525
BstUI	CGCG	1 cut(s)	208
BstV1I	GCAGC	2 cut(s)	2113, 2609
BstV2I	GAAGAC	6 cut(s)	78, 815, 990, 1583, 2304, 2599
BstX2I	RGATCY	6 cut(s)	484, 1206, 1264, 1834, 2137, 3306
BstXI	CCANNNNNNTGG	1 cut(s)	1716
BstYI	RGATCY	6 cut(s)	484, 1206, 1264, 1834, 2137, 3306
Bsu15I	ATCGAT	1 cut(s)	3540
Bsu36I	CCTNAGG	1 cut(s)	1479
BsuRI	GGCC	5 cut(s)	110, 495, 2636, 3354, 3508
BsuTUI	ATCGAT	1 cut(s)	3540
BtsCI	GGATG	5 cut(s)	148, 537, 947, 1161, 1769
BtsI	GCAGTG	2 cut(s)	2020, 2541
BtsIMutI	CAGTG	5 cut(s)	90, 388, 1675, 2020, 2541
BveI	ACCTGC	1 cut(s)	1743
Cac8I	GCNNGC	9 cut(s)	493, 573, 1246, 1493, 1540, 1975, 2106, 2409, 3410
CaiI	CAGNNNCTG	1 cut(s)	3196
CciI	TCATGA	2 cut(s)	273, 2071
CfoI	GCGC	2 cut(s)	3341, 3400
Cfr10I	RCCGGY	1 cut(s)	316
Cfr13I	GGNCC	4 cut(s)	109, 294, 727, 3507
ClaI	ATCGAT	1 cut(s)	3540
CseI	GACGC	1 cut(s)	3054
Csp6I	GTAC	7 cut(s)	18, 803, 1129, 1446, 1732, 2248, 2349
CspAI	ACCGGT	1 cut(s)	316
CviQI	GTAC	7 cut(s)	18, 803, 1129, 1446, 1732, 2248, 2349
DinI	GGCGCC	1 cut(s)	3340
DrdI	GACNNNNNNGTC	1 cut(s)	269
DseDI	GACNNNNNNGTC	1 cut(s)	269
EaeI	YGGCCR	1 cut(s)	3352
Eam1104I	CTCTTC	4 cut(s)	31, 250, 899, 3372
EarI	CTCTTC	4 cut(s)	31, 250, 899, 3372
Eco130I	CCWWGG	1 cut(s)	2696
Eco147I	AGGCCT	2 cut(s)	495, 2636
Eco31I	GGTCTC	3 cut(s)	1625, 3212, 3320
Eco47I	GGWCC	2 cut(s)	294, 727
Eco47III	AGCGCT	1 cut(s)	3399
Eco57I	CTGAAG	4 cut(s)	46, 1256, 1851, 3455
Eco72I	CACGTG	1 cut(s)	49
Eco81I	CCTNAGG	1 cut(s)	1479
Eco88I	CYCGRG	1 cut(s)	155
EcoNI	CCTNNNNNAGG	1 cut(s)	734
EcoO109I	RGGNCCY	2 cut(s)	294, 727
EcoRI	GAATTC	1 cut(s)	3116
EcoRII	CCWGG	4 cut(s)	495, 860, 2781, 2824
EcoT14I	CCWWGG	1 cut(s)	2696
EcoT22I	ATGCAT	1 cut(s)	1953
EgeI	GGCGCC	1 cut(s)	3340
EheI	GGCGCC	1 cut(s)	3340
ErhI	CCWWGG	1 cut(s)	2696
Esp3I	CGTCTC	1 cut(s)	3485
FalI	AAGNNNNNCTT	2 cut(s)	1357, 1389
FaqI	GGGAC	6 cut(s)	1213, 1594, 2663, 2700, 2715, 2925
FauI	CCCGC	1 cut(s)	1609
FbaI	TGATCA	2 cut(s)	94, 2427
FblI	GTMKAC	1 cut(s)	1564
Fnu4HI	GCNGC	3 cut(s)	1290, 2102, 2623
FokI	GGATG	5 cut(s)	155, 524, 954, 1148, 1776
Fsp4HI	GCNGC	3 cut(s)	1290, 2102, 2623
FspBI	CTAG	6 cut(s)	488, 572, 819, 887, 2531, 3446
GlaI	GCGC	2 cut(s)	3340, 3399
GluI	GCNGC	3 cut(s)	1290, 2102, 2623
GsaI	CCCAGC	3 cut(s)	949, 3288, 3398
GsuI	CTGGAG	2 cut(s)	461, 2492
HaeII	RGCGCY	2 cut(s)	3342, 3401
HaeIII	GGCC	5 cut(s)	110, 495, 2636, 3354, 3508
HapII	CCGG	6 cut(s)	123, 317, 1120, 3054, 3131, 3403
HgaI	GACGC	1 cut(s)	3054
HhaI	GCGC	2 cut(s)	3341, 3400
Hin1I	GRCGYC	1 cut(s)	3339
Hin6I	GCGC	2 cut(s)	3339, 3398
HinP1I	GCGC	2 cut(s)	3339, 3398
HincII	GTYRAC	1 cut(s)	969
HindII	GTYRAC	1 cut(s)	969
HindIII	AAGCTT	4 cut(s)	182, 1975, 2573, 3023
HpaII	CCGG	6 cut(s)	123, 317, 1120, 3054, 3131, 3403
HphI	GGTGA	7 cut(s)	80, 89, 1658, 2765, 2996, 3211, 3509
Hpy166II	GTNNAC	5 cut(s)	459, 969, 1565, 1673, 1816
Hpy8I	GTNNAC	5 cut(s)	459, 969, 1565, 1673, 1816
Hpy99I	CGWCG	3 cut(s)	332, 2164, 3338
HpyCH4III	ACNGT	9 cut(s)	204, 383, 679, 966, 1670, 2387, 2484, 2737, 3480
HpyCH4IV	ACGT	3 cut(s)	48, 330, 2113
HpyF10VI	GCNNNNNNNGC	1 cut(s)	2761
HpySE526I	ACGT	3 cut(s)	48, 330, 2113
Hsp92I	GRCGYC	1 cut(s)	3339
HspAI	GCGC	2 cut(s)	3339, 3398
KasI	GGCGCC	1 cut(s)	3338
Kpn2I	TCCGGA	1 cut(s)	3130
KpnI	GGTACC	1 cut(s)	21
Ksp22I	TGATCA	2 cut(s)	94, 2427
LmnI	GCTCC	4 cut(s)	1385, 2769, 3274, 3405
Lsp1109I	GCAGC	2 cut(s)	2113, 2609
LweI	GCATC	5 cut(s)	637, 932, 1231, 2466, 2502
MaeI	CTAG	6 cut(s)	488, 572, 819, 887, 2531, 3446
MaeII	ACGT	3 cut(s)	48, 330, 2113
MbiI	CCGCTC	1 cut(s)	3277
MfeI	CAATTG	1 cut(s)	2796
MflI	RGATCY	6 cut(s)	484, 1206, 1264, 1834, 2137, 3306
MhlI	GDGCHC	3 cut(s)	525, 1390, 1540
MlsI	TGGCCA	1 cut(s)	3354
MluNI	TGGCCA	1 cut(s)	3354
Mly113I	GGCGCC	1 cut(s)	3339
MlyI	GAGTC	8 cut(s)	536, 836, 980, 1235, 2035, 2187, 2400, 3098
MmeI	TCCRAC	2 cut(s)	2791, 2959
Mox20I	TGGCCA	1 cut(s)	3354
Mph1103I	ATGCAT	1 cut(s)	1953
MroI	TCCGGA	1 cut(s)	3130
MroXI	GAANNNNTTC	1 cut(s)	3126
MscI	TGGCCA	1 cut(s)	3354
MslI	CAYNNNNRTG	4 cut(s)	1472, 2146, 2546, 3301
Msp20I	TGGCCA	1 cut(s)	3354
MspCI	CTTAAG	2 cut(s)	1363, 2294
MspI	CCGG	6 cut(s)	123, 317, 1120, 3054, 3131, 3403
MspR9I	CCNGG	6 cut(s)	497, 862, 1120, 2783, 2826, 3055
MunI	CAATTG	1 cut(s)	2796
Mva1269I	GAATGC	3 cut(s)	196, 2235, 3192
MvaI	CCWGG	4 cut(s)	497, 862, 2783, 2826
MvnI	CGCG	1 cut(s)	208
MwoI	GCNNNNNNNGC	1 cut(s)	2761
NarI	GGCGCC	1 cut(s)	3339
NciI	CCSGG	2 cut(s)	1120, 3055
NheI	GCTAGC	1 cut(s)	571
NlaIV	GGNNCC	4 cut(s)	19, 774, 3340, 3482
NmeAIII	GCCGAG	1 cut(s)	676
NmuCI	GTSAC	5 cut(s)	1408, 1697, 2045, 2984, 3041
NsiI	ATGCAT	1 cut(s)	1953
NspI	RCATGY	4 cut(s)	1333, 1437, 1514, 2714
NspV	TTCGAA	3 cut(s)	230, 1576, 3120
OliI	CACNNNNGTG	1 cut(s)	2546
PaeR7I	CTCGAG	1 cut(s)	155
PagI	TCATGA	2 cut(s)	273, 2071
PasI	CCCWGGG	1 cut(s)	861
PceI	AGGCCT	2 cut(s)	495, 2636
PciI	ACATGT	1 cut(s)	1329
PcsI	WCGNNNNNNNCGW	1 cut(s)	648
PctI	GAATGC	3 cut(s)	196, 2235, 3192
PdmI	GAANNNNTTC	1 cut(s)	3126
PfeI	GAWTC	9 cut(s)	559, 779, 890, 929, 1075, 2018, 2270, 3141, 3193
PflMI	CCANNNNNTGG	1 cut(s)	3419
PinAI	ACCGGT	1 cut(s)	316
PkrI	GCNGC	3 cut(s)	1291, 2103, 2624
PleI	GAGTC	8 cut(s)	535, 836, 980, 1234, 2035, 2187, 2399, 3097
PluTI	GGCGCC	1 cut(s)	3342
PmaCI	CACGTG	1 cut(s)	49
PmlI	CACGTG	1 cut(s)	49
PpsI	GAGTC	8 cut(s)	535, 836, 980, 1234, 2035, 2187, 2399, 3097
Ppu21I	YACGTR	1 cut(s)	49
PpuMI	RGGWCCY	2 cut(s)	294, 727
PscI	ACATGT	1 cut(s)	1329
PshAI	GACNNNNGTC	1 cut(s)	593
PshBI	ATTAAT	1 cut(s)	851
Psp1406I	AACGTT	1 cut(s)	2113
Psp5II	RGGWCCY	2 cut(s)	294, 727
Psp6I	CCWGG	4 cut(s)	495, 860, 2781, 2824
PspCI	CACGTG	1 cut(s)	49
PspFI	CCCAGC	3 cut(s)	945, 3284, 3394
PspGI	CCWGG	4 cut(s)	495, 860, 2781, 2824
PspN4I	GGNNCC	4 cut(s)	19, 774, 3340, 3482
PspPI	GGNCC	4 cut(s)	109, 294, 727, 3507
PspPPI	RGGWCCY	2 cut(s)	294, 727
PstNI	CAGNNNCTG	1 cut(s)	3196
PsuI	RGATCY	6 cut(s)	484, 1206, 1264, 1834, 2137, 3306
RsaI	GTAC	7 cut(s)	19, 804, 1130, 1447, 1733, 2249, 2350
RsaNI	GTAC	7 cut(s)	18, 803, 1129, 1446, 1732, 2248, 2349
RseI	CAYNNNNRTG	4 cut(s)	1472, 2146, 2546, 3301
SatI	GCNGC	3 cut(s)	1290, 2102, 2623
Sau96I	GGNCC	4 cut(s)	109, 294, 727, 3507
SchI	GAGTC	8 cut(s)	536, 836, 980, 1235, 2035, 2187, 2400, 3098
ScrFI	CCNGG	6 cut(s)	497, 862, 1120, 2783, 2826, 3055
SduI	GDGCHC	3 cut(s)	525, 1390, 1540
SfaNI	GCATC	5 cut(s)	637, 932, 1231, 2466, 2502
SfcI	CTRYAG	3 cut(s)	962, 1863, 2736
SfoI	GGCGCC	1 cut(s)	3340
Sfr274I	CTCGAG	1 cut(s)	155
SfuI	TTCGAA	3 cut(s)	230, 1576, 3120
SinI	GGWCC	2 cut(s)	294, 727
SlaI	CTCGAG	1 cut(s)	155
SmiMI	CAYNNNNRTG	4 cut(s)	1472, 2146, 2546, 3301
SseBI	AGGCCT	2 cut(s)	495, 2636
SsiI	CCGC	7 cut(s)	208, 1289, 1616, 2625, 3269, 3277, 3529
SspDI	GGCGCC	1 cut(s)	3338
SspI	AATATT	3 cut(s)	1943, 2840, 3234
SspMI	CTAG	6 cut(s)	488, 572, 819, 887, 2531, 3446
StuI	AGGCCT	2 cut(s)	495, 2636
StyD4I	CCNGG	6 cut(s)	495, 860, 1118, 2781, 2824, 3053
StyI	CCWWGG	1 cut(s)	2696
TaaI	ACNGT	9 cut(s)	204, 383, 679, 966, 1670, 2387, 2484, 2737, 3480
TaiI	ACGT	3 cut(s)	51, 333, 2116
TaqII	GACCGA	1 cut(s)	605
TatI	WGTACW	2 cut(s)	1128, 2348
TauI	GCSGC	1 cut(s)	1292
TfiI	GAWTC	9 cut(s)	559, 779, 890, 929, 1075, 2018, 2270, 3141, 3193
TscAI	CASTG	5 cut(s)	97, 388, 1675, 2020, 2548
TseFI	GTSAC	5 cut(s)	1408, 1697, 2045, 2984, 3041
TseI	GCWGC	2 cut(s)	2101, 2622
Tsp45I	GTSAC	5 cut(s)	1408, 1697, 2045, 2984, 3041
TspDTI	ATGAA	8 cut(s)	119, 526, 1914, 1936, 2043, 2168, 2927, 3009
TspGWI	ACGGA	3 cut(s)	476, 2681, 3302
TspRI	CASTG	5 cut(s)	97, 388, 1675, 2020, 2548
Van91I	CCANNNNNTGG	1 cut(s)	3419
Vha464I	CTTAAG	2 cut(s)	1363, 2294
VpaK11BI	GGWCC	2 cut(s)	294, 727
VspI	ATTAAT	1 cut(s)	851
XagI	CCTNNNNNAGG	1 cut(s)	734
XapI	RAATTY	5 cut(s)	1190, 1218, 1991, 3035, 3116
XbaI	TCTAGA	1 cut(s)	3445
XceI	RCATGY	4 cut(s)	1333, 1437, 1514, 2714
XcmI	CCANNNNNNNNNTGG	1 cut(s)	256
XhoI	CTCGAG	1 cut(s)	155
XmiI	GTMKAC	1 cut(s)	1564
XmnI	GAANNNNTTC	1 cut(s)	3126
XspI	CTAG	6 cut(s)	488, 572, 819, 887, 2531, 3446
Zsp2I	ATGCAT	1 cut(s)	1953

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.