Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002338

Physical Location & Seq

Genomic Coordinates Forward (+)

48946906 .. 48948546

Gene Structure 1641 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39274

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGCTTATGAATCACTTCAACACAGGAGAGCCGTTATGGAGACCTTTCCTCTACAATGAGAGCTGCCCTGATGCTTTACCGACGGTTAAATCCATTGCTCCTCCAAACCATACAATCTGCTCTGATTGGCTTTTGTGGCTTCTTCATGGAAAACTCGGAGTGTCTGATTATAATAATGCTTTGAAGGTTGGTTATGATCCTGAGCTTGAATCCTATCCACCCTGGCTACTCTCTCAGCCCTATTCACAACTTTTACCTTCTGTTAGAGCTCCTGGAACTTCAATCGGTCATTTGAAAGAGGACAGTAGATCGGATTTTGGAACCACTGATAGTATAGCAGCTTTTTTAGCAGCTCGTGCAACACAACCTGGGAAAGCTGTAACTTCATTGGGTTCAACACTTGCCATAAAACTGCTGAGCGTTACTAGGATTGAGGATGCACGGTTTGGGGTGTATAGTCATCGCCTTGATGATAAGTGGCTTGTTGGAGGTGCTAATTCAAATACTGGTGGAGCAGTTCTTACACAAATTTTCACTGACGAGCAACTGGAGAAATTGAGTGAACAGATTGATCCCATGAAGCTTCTCCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0006793 GO:0006796 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019150 GO:0019200 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044262 GO:0044424 GO:0044444 GO:0044464 GO:0046835 GO:0071704 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FGGY_C FGGY_N

Protein Analysis

197

Amino Acids

21.68

Weight (kDa)

5.48

Isoelectric Point (pI)

34.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0002338)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21370 AT2G21370 AT2G21370 AT2G21370
fragaria_vesca	FvH4_2g10090 FvH4_2g10090 FvH4_2g10090 FvH4_2g10090
malus_domestica	MD10G1065800.v1.1
prunus_persica	Prupe.8G087700_v2.0.a1 Prupe.8G087700_v2.0.a1
pyrus_communis	pycom10g05120
rosa_chinensis	RchiOBHm_Chr3g0496591 RchiOBHm_Chr4g0423361 RchiOBHm_Chr6g0267041
rosa_laevigata	RLG00000003987 RLG00000014047 RLG00000018837 RLG00000028975
rosa_multiflora	Rmu_sc0013804.1_g000007 Rmu_sc0030781.1_g000001 Rmu_sc0033156.1_g000001 Rmu_sc0033555.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147730 Rroxscaffold_2G00147740 Rroxscaffold_7G00201210
rosa_rugosa	Rorug01G0215500 Rorug02G0305900
rosa_samantha	Rh2BG290800 Rh2BG290900 Rh2DG285900 Rh3AG330100 Rh3CG362900 Rh3DG366000 Rh5CG284800 Rh6CG099100 Rh6CG146300 Rh6CG146400 Rh7BG254600 Rh7BG468800
rosa_wichuraiana	Rw3G028900 Rw6G013010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	171
AclWI	GGATC	2 cut(s)	191, 566
AcsI	RAATTY	1 cut(s)	528
AgsI	TTSAA	7 cut(s)	19, 184, 209, 282, 295, 396, 501
AjnI	CCWGG	3 cut(s)	221, 271, 367
AluBI	AGCT	7 cut(s)	63, 205, 269, 341, 353, 377, 583
AluI	AGCT	7 cut(s)	63, 205, 269, 341, 353, 377, 583
Alw21I	GWGCWC	1 cut(s)	271
Alw26I	GTCTC	1 cut(s)	34
AlwI	GGATC	2 cut(s)	191, 566
ApeKI	GCWGC	3 cut(s)	63, 338, 350
ApoI	RAATTY	1 cut(s)	528
Asp700I	GAANNNNTTC	1 cut(s)	14
BanII	GRGCYC	1 cut(s)	271
BauI	CACGAG	1 cut(s)	354
Bbv12I	GWGCWC	1 cut(s)	271
BbvI	GCAGC	3 cut(s)	50, 350, 362
BceAI	ACGGC	1 cut(s)	16
BciT130I	CCWGG	3 cut(s)	223, 273, 369
BcoDI	GTCTC	1 cut(s)	34
BfaI	CTAG	2 cut(s)	426, 592
BisI	GCNGC	3 cut(s)	64, 339, 351
BlpI	GCTNAGC	1 cut(s)	416
BlsI	GCNGC	3 cut(s)	65, 340, 352
Bme1390I	CCNGG	3 cut(s)	223, 273, 369
BmiI	GGNNCC	1 cut(s)	322
BmrFI	CCNGG	3 cut(s)	223, 273, 369
BmsI	GCATC	2 cut(s)	61, 427
BpmI	CTGGAG	1 cut(s)	569
Bpu10I	CCTNAGC	1 cut(s)	201
Bpu1102I	GCTNAGC	1 cut(s)	416
BsaI	GGTCTC	1 cut(s)	34
BsaJI	CCNNGG	2 cut(s)	221, 368
Bse1I	ACTGG	2 cut(s)	511, 552
Bse3DI	GCAATG	1 cut(s)	93
BseBI	CCWGG	3 cut(s)	223, 273, 369
BseDI	CCNNGG	2 cut(s)	221, 368
BseGI	GGATG	1 cut(s)	442
BseMI	GCAATG	1 cut(s)	93
BseMII	CTCAG	3 cut(s)	192, 248, 407
BseNI	ACTGG	2 cut(s)	511, 552
BseRI	GAGGAG	2 cut(s)	90, 578
BseXI	GCAGC	3 cut(s)	50, 350, 362
BsiHKAI	GWGCWC	1 cut(s)	271
BsmAI	GTCTC	1 cut(s)	34
Bso31I	GGTCTC	1 cut(s)	34
Bsp1286I	GDGCHC	1 cut(s)	271
Bsp143I	GATC	3 cut(s)	196, 308, 571
Bsp1720I	GCTNAGC	1 cut(s)	416
BspCNI	CTCAG	3 cut(s)	193, 247, 408
BspLI	GGNNCC	1 cut(s)	322
BspPI	GGATC	2 cut(s)	191, 566
BspTNI	GGTCTC	1 cut(s)	34
BsrDI	GCAATG	1 cut(s)	93
BsrI	ACTGG	2 cut(s)	511, 552
BssECI	CCNNGG	2 cut(s)	221, 368
BssMI	GATC	3 cut(s)	196, 308, 571
BssSI	CACGAG	1 cut(s)	354
Bst2BI	CACGAG	1 cut(s)	354
Bst2UI	CCWGG	3 cut(s)	223, 273, 369
Bst4CI	ACNGT	3 cut(s)	85, 305, 444
BstAPI	GCANNNNNTGC	1 cut(s)	356
BstDEI	CTNAG	3 cut(s)	201, 234, 416
BstF5I	GGATG	1 cut(s)	442
BstKTI	GATC	3 cut(s)	199, 311, 574
BstMAI	GTCTC	1 cut(s)	34
BstMBI	GATC	3 cut(s)	196, 308, 571
BstMWI	GCNNNNNNNGC	3 cut(s)	136, 347, 356
BstNI	CCWGG	3 cut(s)	223, 273, 369
BstSCI	CCNGG	3 cut(s)	221, 271, 367
BstV1I	GCAGC	3 cut(s)	50, 350, 362
BtgZI	GCGATG	1 cut(s)	446
BtsCI	GGATG	1 cut(s)	442
BtsIMutI	CAGTG	2 cut(s)	324, 534
CviAII	CATG	2 cut(s)	146, 577
DdeI	CTNAG	3 cut(s)	201, 234, 416
DpnI	GATC	3 cut(s)	198, 310, 573
DpnII	GATC	3 cut(s)	196, 308, 571
Ecl136II	GAGCTC	1 cut(s)	269
Eco24I	GRGCYC	1 cut(s)	271
Eco31I	GGTCTC	1 cut(s)	34
Eco53kI	GAGCTC	1 cut(s)	269
EcoICRI	GAGCTC	1 cut(s)	269
EcoRII	CCWGG	3 cut(s)	221, 271, 367
EcoT38I	GRGCYC	1 cut(s)	271
FaeI	CATG	2 cut(s)	149, 580
FatI	CATG	2 cut(s)	145, 576
Fnu4HI	GCNGC	3 cut(s)	64, 339, 351
FokI	GGATG	1 cut(s)	449
FriOI	GRGCYC	1 cut(s)	271
Fsp4HI	GCNGC	3 cut(s)	64, 339, 351
FspBI	CTAG	2 cut(s)	426, 592
GluI	GCNGC	3 cut(s)	64, 339, 351
GsuI	CTGGAG	1 cut(s)	569
Hin1II	CATG	2 cut(s)	149, 580
HindIII	AAGCTT	1 cut(s)	581
HinfI	GANTC	2 cut(s)	10, 209
Hpy166II	GTNNAC	1 cut(s)	563
Hpy188I	TCNGA	4 cut(s)	124, 158, 166, 313
Hpy188III	TCNNGA	1 cut(s)	200
Hpy8I	GTNNAC	1 cut(s)	563
Hpy99I	CGWCG	1 cut(s)	85
HpyAV	CCTTC	2 cut(s)	178, 267
HpyCH4III	ACNGT	3 cut(s)	85, 305, 444
HpyCH4V	TGCA	2 cut(s)	359, 440
HpyF10VI	GCNNNNNNNGC	3 cut(s)	136, 347, 356
HpyF3I	CTNAG	3 cut(s)	201, 234, 416
Hsp92II	CATG	2 cut(s)	149, 580
Kzo9I	GATC	3 cut(s)	196, 308, 571
LmnI	GCTCC	3 cut(s)	103, 274, 512
Lsp1109I	GCAGC	3 cut(s)	50, 350, 362
LweI	GCATC	2 cut(s)	61, 427
MaeI	CTAG	2 cut(s)	426, 592
MaeIII	GTNAC	2 cut(s)	379, 421
MalI	GATC	3 cut(s)	198, 310, 573
MboI	GATC	3 cut(s)	196, 308, 571
MboII	GAAGA	1 cut(s)	134
MhlI	GDGCHC	1 cut(s)	271
MluCI	AATT	3 cut(s)	496, 528, 554
MmeI	TCCRAC	1 cut(s)	466
MnlI	CCTC	5 cut(s)	59, 111, 292, 427, 482
MroXI	GAANNNNTTC	1 cut(s)	14
MseI	TTAA	1 cut(s)	87
MspR9I	CCNGG	3 cut(s)	223, 273, 369
MvaI	CCWGG	3 cut(s)	223, 273, 369
MwoI	GCNNNNNNNGC	3 cut(s)	136, 347, 356
NdeII	GATC	3 cut(s)	196, 308, 571
NlaIII	CATG	2 cut(s)	149, 580
NlaIV	GGNNCC	1 cut(s)	322
PdmI	GAANNNNTTC	1 cut(s)	14
PfeI	GAWTC	2 cut(s)	10, 209
PfoI	TCCNGGA	1 cut(s)	271
PkrI	GCNGC	3 cut(s)	65, 340, 352
PsiI	TTATAA	1 cut(s)	171
Psp124BI	GAGCTC	1 cut(s)	271
Psp6I	CCWGG	3 cut(s)	221, 271, 367
PspGI	CCWGG	3 cut(s)	221, 271, 367
PspN4I	GGNNCC	1 cut(s)	322
SacI	GAGCTC	1 cut(s)	271
SaqAI	TTAA	1 cut(s)	87
SatI	GCNGC	3 cut(s)	64, 339, 351
Sau3AI	GATC	3 cut(s)	196, 308, 571
ScrFI	CCNGG	3 cut(s)	223, 273, 369
SduI	GDGCHC	1 cut(s)	271
SfaNI	GCATC	2 cut(s)	61, 427
Sse9I	AATT	3 cut(s)	496, 528, 554
SspMI	CTAG	2 cut(s)	426, 592
SstI	GAGCTC	1 cut(s)	271
StyD4I	CCNGG	3 cut(s)	221, 271, 367
TaaI	ACNGT	3 cut(s)	85, 305, 444
TaqII	GACCGA	1 cut(s)	275
TasI	AATT	3 cut(s)	496, 528, 554
TfiI	GAWTC	2 cut(s)	10, 209
Tru1I	TTAA	1 cut(s)	87
Tru9I	TTAA	1 cut(s)	87
TscAI	CASTG	2 cut(s)	331, 541
TseI	GCWGC	3 cut(s)	63, 338, 350
TspDTI	ATGAA	4 cut(s)	23, 134, 375, 593
TspRI	CASTG	2 cut(s)	331, 541
XapI	RAATTY	1 cut(s)	528
XmnI	GAANNNNTTC	1 cut(s)	14
XspI	CTAG	2 cut(s)	426, 592

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.