RchiOBHm_Chr6g0267041

FGGY family of carbohydrate kinases, C-terminal domain

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
23544856 .. 23548573
3718 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23951

Sequence Viewer

Length: 1467 bp
ATGCTGGCTTCAGTTCATCATCATCCTGCCTTTGCAAGCTCCTTCCTGTTCCCCTGCTCACATGGGTATCCTAGTCCAAGAAGGCAATCTCCACCAACTGGGTTGCACTTGAACAGAGCTCTGATCAAACTGAGAAGACCAAGAGGTCCAAGGCCAATGACTTTTGGGAGCAATGGGGGTGAACCTGAAGTTGGGGAGCGGCTTTATCTGGGACTGGACTTTGGGACTTCTGGAGCGAGGTTTGCCCTTATCGATAAACGAGGGATAATTCATGCTGAGGGAAAGAGAGAATACCCTCTTTTTATGAGTGAAGAAAAAATGGATTGGGCCCGTTCATGGAAGGCCACTCTCTTCTCACTTCTTGGAGACATTCCATCTCATCTTCGTAAACTGATTGCTTCTATTTCCATTGATGGGACTTCTGCAACTACTCTCATTGTTGACAGCAACACAGGAGAGCCGTTATGGAGACCTTTCCTCTACAATGAGAGCTGCCCTGATGCTTTACCGACGGTTAAATCCATTGCTCCTCCAAACCATACGGTCTGCTCTGGTTCCTCTACTCTGTGCAAGCTTGTCTCCTGGTGGGAGAATGATGATCCAAATAAAAAATATGCACTACTGTTGCACCAAGCAGATTGGCTTTTGTGGCTTCTTCATGGAAAACTCGGAGTGTCTGATTATAATAATGCTCTGAAGGTTGGTTATGATCCTGAGCTTGAATCCTATCCACCCTGGCTACTCTCTCAGCCCTATTCACAACTTTTACCTTCTGTTGGAGCTCCTGGAACTTCAATCGGTCATTTGAAAGAGGACATTAGATCGGATTTTGGTTTCCCAAGTGATTGTGCTGTATGCACAGGAACCACTGATAGTATAGCAGCTTTTTTAGCAGCTCGTGCAACACAACCTGGGAAAGCTGTAACTTCTTTGGGTTCAACACTTGCCATAAAACTGCTGAGCACTACTAGGATTGAGGATGCACGGTTTGGGGTGTATAGTCATCGCCTTGATGATAAGTGGCTTGTTGGAGGTGCTTCAAATACTGGTGGAGCAGTTCTTAGACAAATTTTCACTGACCAGCAACTGGAGAAATTGAGTGAACAGATTGATCCCATGGAAGCTTCTCCTCTAGACTACTACCCACTGCAATCAGTTGGTGAGAGATTTCCAGTGGCAGATCCGAATATGGCTCCAAGATTACACCCACGTCCAGAAAGTGAGGTGGAGTTTTTGCATGGGATTCTTGAATCCATTGCGCGTATAGAGGCAAAAGCTTACAACTTACTCAAGGAACTAGGCGCAACCCAAGTTGATGAAGTGTTCACAGCCGGAGGTGGTGCGAGAAATGAGAAATGGACAAAGATTAGAGAGAGAGTACTTGGTTTGCCTGTAAGTTCTGCAATTCAAACCGAGGCTGCATATGGAGCTGCTTTGTTGGCTTTGAGGGGAATCCATGAGAAATGA

Protein Analysis

488

Amino Acids

53.53

Weight (kDa)

6.58

Isoelectric Point (pI)

41.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FGGY_N PF00370 68 - 297 1.2e-09 FGGY family of carbohydrate kinases, N-terminal domain
FGGY_C PF02782 331 - 483 2.4e-10 FGGY family of carbohydrate kinases, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 684
AasI GACNNNNNNGTC 1 cut(s) 144
AccB7I CCANNNNNTGG 2 cut(s) 98, 1087
AccBSI CCGCTC 1 cut(s) 199
AccII CGCG 1 cut(s) 1261
AciI CCGC 1 cut(s) 199
AclWI GGATC 4 cut(s) 593, 704, 1106, 1175
AcsI RAATTY 1 cut(s) 1068
AcuI CTGAAG 2 cut(s) 207, 716
AfaI GTAC 1 cut(s) 1380
AfiI CCNNNNNNNGG 6 cut(s) 98, 191, 336, 414, 776, 1087
AgsI TTSAA 8 cut(s) 112, 722, 795, 808, 939, 1041, 1250, 1409
AjiI CACGTC 1 cut(s) 1211
AjnI CCWGG 4 cut(s) 581, 734, 784, 910
AjuI GAANNNNNNNTTGG 2 cut(s) 174, 206
Alw21I GWGCWC 3 cut(s) 121, 784, 965
Alw26I GTCTC 3 cut(s) 360, 463, 583
AlwI GGATC 4 cut(s) 593, 704, 1106, 1175
AlwNI CAGNNNCTG 1 cut(s) 1087
AoxI GGCC 3 cut(s) 152, 327, 342
ApaI GGGCCC 1 cut(s) 331
ApeKI GCWGC 5 cut(s) 492, 881, 893, 1418, 1430
ApoI RAATTY 1 cut(s) 1068
AspLEI GCGC 2 cut(s) 1261, 1304
AspS9I GGNCC 3 cut(s) 146, 327, 328
AsuHPI GGTGA 2 cut(s) 191, 1172
AvaII GGWCC 1 cut(s) 146
BaeGI GKGCMC 1 cut(s) 331
BaeI ACNNNNGTAYC 2 cut(s) 50, 83
BanII GRGCYC 3 cut(s) 121, 331, 784
BauI CACGAG 1 cut(s) 897
BbsI GAAGAC 1 cut(s) 142
Bbv12I GWGCWC 3 cut(s) 121, 784, 965
BbvCI CCTCAGC 1 cut(s) 276
BbvI GCAGC 5 cut(s) 479, 893, 905, 1405, 1417
BccI CCATC 2 cut(s) 382, 407
BceAI ACGGC 1 cut(s) 445
BciT130I CCWGG 4 cut(s) 583, 736, 786, 912
BciVI GTATCC 1 cut(s) 78
BclI TGATCA 1 cut(s) 123
BcoDI GTCTC 3 cut(s) 360, 463, 583
BfaI CTAG 4 cut(s) 72, 969, 1133, 1298
BfuI GTATCC 1 cut(s) 78
BisI GCNGC 6 cut(s) 200, 493, 882, 894, 1419, 1431
BlpI GCTNAGC 1 cut(s) 959
BlsI GCNGC 6 cut(s) 201, 494, 883, 895, 1420, 1432
BmcAI AGTACT 1 cut(s) 1380
Bme1390I CCNGG 4 cut(s) 583, 736, 786, 912
Bme18I GGWCC 1 cut(s) 146
BmgBI CACGTC 1 cut(s) 1211
BmgT120I GGNCC 3 cut(s) 146, 327, 328
BmiI GGNNCC 4 cut(s) 329, 556, 865, 1194
BmrFI CCNGG 4 cut(s) 583, 736, 786, 912
BmrI ACTGGG 1 cut(s) 108
BmsI GCATC 2 cut(s) 490, 970
BmuI ACTGGG 1 cut(s) 108
BpiI GAAGAC 1 cut(s) 142
BpmI CTGGAG 2 cut(s) 252, 1109
Bpu10I CCTNAGC 2 cut(s) 276, 714
Bpu1102I GCTNAGC 1 cut(s) 959
BpuEI CTTGAG 1 cut(s) 1274
Bsa29I ATCGAT 1 cut(s) 252
BsaI GGTCTC 1 cut(s) 463
BsaJI CCNNGG 5 cut(s) 149, 734, 911, 1116, 1413
Bsc4I CCNNNNNNNGG 6 cut(s) 98, 191, 336, 414, 776, 1087
Bse1I ACTGG 5 cut(s) 103, 219, 1051, 1092, 1172
Bse3DI GCAATG 3 cut(s) 178, 522, 1254
BseBI CCWGG 4 cut(s) 583, 736, 786, 912
BseCI ATCGAT 1 cut(s) 252
BseDI CCNNGG 5 cut(s) 149, 734, 911, 1116, 1413
BseGI GGATG 2 cut(s) 22, 985
BseLI CCNNNNNNNGG 6 cut(s) 98, 191, 336, 414, 776, 1087
BseMI GCAATG 3 cut(s) 178, 522, 1254
BseMII CTCAG 5 cut(s) 122, 267, 705, 761, 950
BseNI ACTGG 5 cut(s) 103, 219, 1051, 1092, 1172
BseRI GAGGAG 2 cut(s) 519, 1119
BseSI GKGCMC 1 cut(s) 331
BseXI GCAGC 5 cut(s) 479, 893, 905, 1405, 1417
Bsh1236I CGCG 1 cut(s) 1261
BshFI GGCC 3 cut(s) 154, 329, 344
BshVI ATCGAT 1 cut(s) 252
BsiHKAI GWGCWC 3 cut(s) 121, 784, 965
BsiSI CCGG 1 cut(s) 1332
BslFI GGGAC 3 cut(s) 225, 238, 430
BslI CCNNNNNNNGG 6 cut(s) 98, 191, 336, 414, 776, 1087
BsmAI GTCTC 3 cut(s) 360, 463, 583
BsmFI GGGAC 3 cut(s) 225, 238, 430
BsnI GGCC 3 cut(s) 154, 329, 344
Bso31I GGTCTC 1 cut(s) 463
Bsp120I GGGCCC 1 cut(s) 327
Bsp1286I GDGCHC 4 cut(s) 121, 331, 784, 965
Bsp143I GATC 6 cut(s) 123, 598, 709, 821, 1111, 1180
Bsp1720I GCTNAGC 1 cut(s) 959
Bsp19I CCATGG 1 cut(s) 1116
BspACI CCGC 1 cut(s) 199
BspANI GGCC 3 cut(s) 154, 329, 344
BspCNI CTCAG 5 cut(s) 123, 268, 706, 760, 951
BspDI ATCGAT 1 cut(s) 252
BspFNI CGCG 1 cut(s) 1261
BspLI GGNNCC 4 cut(s) 329, 556, 865, 1194
BspPI GGATC 4 cut(s) 593, 704, 1106, 1175
BspTNI GGTCTC 1 cut(s) 463
BsrBI CCGCTC 1 cut(s) 199
BsrDI GCAATG 3 cut(s) 178, 522, 1254
BsrI ACTGG 5 cut(s) 103, 219, 1051, 1092, 1172
BssECI CCNNGG 5 cut(s) 149, 734, 911, 1116, 1413
BssMI GATC 6 cut(s) 123, 598, 709, 821, 1111, 1180
BssSI CACGAG 1 cut(s) 897
BssT1I CCWWGG 2 cut(s) 149, 1116
Bst2UI CCWGG 4 cut(s) 583, 736, 786, 912
Bst4CI ACNGT 4 cut(s) 514, 544, 624, 987
Bst6I CTCTTC 1 cut(s) 356
BstAPI GCANNNNNTGC 1 cut(s) 899
BstC8I GCNNGC 3 cut(s) 6, 37, 572
BstDEI CTNAG 6 cut(s) 131, 276, 714, 747, 959, 1061
BstDSI CCRYGG 1 cut(s) 1116
BstF5I GGATG 2 cut(s) 22, 985
BstFNI CGCG 1 cut(s) 1261
BstHHI GCGC 2 cut(s) 1261, 1304
BstKTI GATC 6 cut(s) 126, 601, 712, 824, 1114, 1183
BstMAI GTCTC 3 cut(s) 360, 463, 583
BstMBI GATC 6 cut(s) 123, 598, 709, 821, 1111, 1180
BstMWI GCNNNNNNNGC 6 cut(s) 242, 649, 890, 899, 1427, 1439
BstNI CCWGG 4 cut(s) 583, 736, 786, 912
BstSCI CCNGG 4 cut(s) 581, 734, 784, 910
BstSLI GKGCMC 1 cut(s) 331
BstUI CGCG 1 cut(s) 1261
BstV1I GCAGC 5 cut(s) 479, 893, 905, 1405, 1417
BstV2I GAAGAC 1 cut(s) 142
BstX2I RGATCY 1 cut(s) 1180
BstYI RGATCY 1 cut(s) 1180
Bsu15I ATCGAT 1 cut(s) 252
BsuI GTATCC 1 cut(s) 78
BsuRI GGCC 3 cut(s) 154, 329, 344
BsuTUI ATCGAT 1 cut(s) 252
BtgI CCRYGG 1 cut(s) 1116
BtgZI GCGATG 1 cut(s) 989
BtrI CACGTC 1 cut(s) 1211
BtsCI GGATG 2 cut(s) 22, 985
BtsI GCAGTG 1 cut(s) 1145
BtsIMutI CAGTG 4 cut(s) 867, 1074, 1145, 1179
Cac8I GCNNGC 3 cut(s) 6, 37, 572
CaiI CAGNNNCTG 1 cut(s) 1087
CfoI GCGC 2 cut(s) 1261, 1304
Cfr13I GGNCC 3 cut(s) 146, 327, 328
ClaI ATCGAT 1 cut(s) 252
Csp6I GTAC 1 cut(s) 1379
CviAII CATG 7 cut(s) 62, 272, 336, 659, 1117, 1238, 1457
CviQI GTAC 1 cut(s) 1379
DdeI CTNAG 6 cut(s) 131, 276, 714, 747, 959, 1061
DpnI GATC 6 cut(s) 125, 600, 711, 823, 1113, 1182
DpnII GATC 6 cut(s) 123, 598, 709, 821, 1111, 1180
DrdI GACNNNNNNGTC 1 cut(s) 144
DseDI GACNNNNNNGTC 1 cut(s) 144
Eam1104I CTCTTC 1 cut(s) 356
EarI CTCTTC 1 cut(s) 356
Ecl136II GAGCTC 2 cut(s) 119, 782
Eco130I CCWWGG 2 cut(s) 149, 1116
Eco24I GRGCYC 3 cut(s) 121, 331, 784
Eco31I GGTCTC 1 cut(s) 463
Eco47I GGWCC 1 cut(s) 146
Eco53kI GAGCTC 2 cut(s) 119, 782
Eco57I CTGAAG 2 cut(s) 207, 716
EcoICRI GAGCTC 2 cut(s) 119, 782
EcoRII CCWGG 4 cut(s) 581, 734, 784, 910
EcoT14I CCWWGG 2 cut(s) 149, 1116
EcoT38I GRGCYC 3 cut(s) 121, 331, 784
ErhI CCWWGG 2 cut(s) 149, 1116
FaeI CATG 7 cut(s) 65, 275, 339, 662, 1120, 1241, 1460
FaqI GGGAC 3 cut(s) 225, 238, 430
FatI CATG 7 cut(s) 61, 271, 335, 658, 1116, 1237, 1456
FauNDI CATATG 1 cut(s) 1423
FbaI TGATCA 1 cut(s) 123
Fnu4HI GCNGC 6 cut(s) 200, 493, 882, 894, 1419, 1431
FokI GGATG 2 cut(s) 9, 992
FriOI GRGCYC 3 cut(s) 121, 331, 784
Fsp4HI GCNGC 6 cut(s) 200, 493, 882, 894, 1419, 1431
FspBI CTAG 4 cut(s) 72, 969, 1133, 1298
GlaI GCGC 2 cut(s) 1260, 1303
GluI GCNGC 6 cut(s) 200, 493, 882, 894, 1419, 1431
GsuI CTGGAG 2 cut(s) 252, 1109
HaeIII GGCC 3 cut(s) 154, 329, 344
HapII CCGG 1 cut(s) 1332
HhaI GCGC 2 cut(s) 1261, 1304
Hin1II CATG 7 cut(s) 65, 275, 339, 662, 1120, 1241, 1460
Hin6I GCGC 2 cut(s) 1259, 1302
HinP1I GCGC 2 cut(s) 1259, 1302
HincII GTYRAC 1 cut(s) 442
HindII GTYRAC 1 cut(s) 442
HindIII AAGCTT 3 cut(s) 572, 1122, 1275
HinfI GANTC 4 cut(s) 722, 1243, 1250, 1452
HpaII CCGG 1 cut(s) 1332
HphI GGTGA 2 cut(s) 191, 1172
Hpy166II GTNNAC 5 cut(s) 182, 389, 442, 1103, 1326
Hpy188I TCNGA 6 cut(s) 123, 671, 679, 696, 826, 1185
Hpy188III TCNNGA 5 cut(s) 231, 713, 1133, 1214, 1247
Hpy8I GTNNAC 5 cut(s) 182, 389, 442, 1103, 1326
Hpy99I CGWCG 1 cut(s) 514
HpyAV CCTTC 5 cut(s) 52, 75, 334, 691, 780
HpyCH4III ACNGT 4 cut(s) 514, 544, 624, 987
HpyCH4IV ACGT 1 cut(s) 1210
HpyF10VI GCNNNNNNNGC 6 cut(s) 242, 649, 890, 899, 1427, 1439
HpyF3I CTNAG 6 cut(s) 131, 276, 714, 747, 959, 1061
HpySE526I ACGT 1 cut(s) 1210
Hsp92II CATG 7 cut(s) 65, 275, 339, 662, 1120, 1241, 1460
HspAI GCGC 2 cut(s) 1259, 1302
Ksp22I TGATCA 1 cut(s) 123
Kzo9I GATC 6 cut(s) 123, 598, 709, 821, 1111, 1180
Lsp1109I GCAGC 5 cut(s) 479, 893, 905, 1405, 1417
LweI GCATC 2 cut(s) 490, 970
MaeI CTAG 4 cut(s) 72, 969, 1133, 1298
MaeII ACGT 1 cut(s) 1210
MaeIII GTNAC 1 cut(s) 922
MalI GATC 6 cut(s) 125, 600, 711, 823, 1113, 1182
MbiI CCGCTC 1 cut(s) 199
MboI GATC 6 cut(s) 123, 598, 709, 821, 1111, 1180
MboII GAAGA 5 cut(s) 147, 323, 343, 374, 647
MflI RGATCY 1 cut(s) 1180
MhlI GDGCHC 4 cut(s) 121, 331, 784, 965
MluCI AATT 4 cut(s) 267, 1068, 1094, 1404
MmeI TCCRAC 2 cut(s) 757, 1009
MseI TTAA 1 cut(s) 516
MspI CCGG 1 cut(s) 1332
MspR9I CCNGG 4 cut(s) 583, 736, 786, 912
MvaI CCWGG 4 cut(s) 583, 736, 786, 912
MvnI CGCG 1 cut(s) 1261
MwoI GCNNNNNNNGC 6 cut(s) 242, 649, 890, 899, 1427, 1439
NcoI CCATGG 1 cut(s) 1116
NdeI CATATG 1 cut(s) 1423
NdeII GATC 6 cut(s) 123, 598, 709, 821, 1111, 1180
NlaIII CATG 7 cut(s) 65, 275, 339, 662, 1120, 1241, 1460
NlaIV GGNNCC 4 cut(s) 329, 556, 865, 1194
PfeI GAWTC 4 cut(s) 722, 1243, 1250, 1452
PflMI CCANNNNNTGG 2 cut(s) 98, 1087
PfoI TCCNGGA 1 cut(s) 784
PkrI GCNGC 6 cut(s) 201, 494, 883, 895, 1420, 1432
PsiI TTATAA 1 cut(s) 684
Psp124BI GAGCTC 2 cut(s) 121, 784
Psp6I CCWGG 4 cut(s) 581, 734, 784, 910
PspGI CCWGG 4 cut(s) 581, 734, 784, 910
PspN4I GGNNCC 4 cut(s) 329, 556, 865, 1194
PspOMI GGGCCC 1 cut(s) 327
PspPI GGNCC 3 cut(s) 146, 327, 328
PstNI CAGNNNCTG 1 cut(s) 1087
PsuI RGATCY 1 cut(s) 1180
RsaI GTAC 1 cut(s) 1380
RsaNI GTAC 1 cut(s) 1379
SacI GAGCTC 2 cut(s) 121, 784
SaqAI TTAA 1 cut(s) 516
SatI GCNGC 6 cut(s) 200, 493, 882, 894, 1419, 1431
Sau3AI GATC 6 cut(s) 123, 598, 709, 821, 1111, 1180
Sau96I GGNCC 3 cut(s) 146, 327, 328
ScaI AGTACT 1 cut(s) 1380
ScrFI CCNGG 4 cut(s) 583, 736, 786, 912
SduI GDGCHC 4 cut(s) 121, 331, 784, 965
SfaNI GCATC 2 cut(s) 490, 970
SinI GGWCC 1 cut(s) 146
SmlI CTYRAG 1 cut(s) 1289
SmoI CTYRAG 1 cut(s) 1289
Sse9I AATT 4 cut(s) 267, 1068, 1094, 1404
SsiI CCGC 1 cut(s) 199
SspMI CTAG 4 cut(s) 72, 969, 1133, 1298
SstI GAGCTC 2 cut(s) 121, 784
StyD4I CCNGG 4 cut(s) 581, 734, 784, 910
StyI CCWWGG 2 cut(s) 149, 1116
TaaI ACNGT 4 cut(s) 514, 544, 624, 987
TaiI ACGT 1 cut(s) 1213
TaqI TCGA 1 cut(s) 252
TaqII GACCGA 1 cut(s) 788
TasI AATT 4 cut(s) 267, 1068, 1094, 1404
TatI WGTACW 1 cut(s) 1378
TauI GCSGC 1 cut(s) 202
TfiI GAWTC 4 cut(s) 722, 1243, 1250, 1452
Tru1I TTAA 1 cut(s) 516
Tru9I TTAA 1 cut(s) 516
TscAI CASTG 4 cut(s) 874, 1081, 1152, 1179
TseI GCWGC 5 cut(s) 492, 881, 893, 1418, 1430
TspDTI ATGAA 5 cut(s) 5, 260, 324, 647, 1332
TspRI CASTG 4 cut(s) 874, 1081, 1152, 1179
Van91I CCANNNNNTGG 2 cut(s) 98, 1087
VpaK11BI GGWCC 1 cut(s) 146
XapI RAATTY 1 cut(s) 1068
XbaI TCTAGA 1 cut(s) 1132
XspI CTAG 4 cut(s) 72, 969, 1133, 1298
ZrmI AGTACT 1 cut(s) 1380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.