Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0030781.1

Orthogroup ID

OG0002338

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1491

Gene Structure 1491 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0030781.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

atggattgggcccgttcatggaaggccacactcttctcacttcttggagacattccatctcatcttcgtaaactgattgcttccatttccattgatgggacttctgcaactactctcattgttgacagcaacacaggagagccgttatggagacctttcctctacaatgagagctgccctgatgctttaccgacggttaaatccattgctcctccaaaccatacagtctgctctggttcctctactctgtgcaagcttgtctcctggtgggagaatgatgatccaaataaaaaatctgcactactgttgcaccaagcagattggcttttgtggcttcttcatggaaaactcggagtgtctgattataataatgctctgaaggttggttatgatcctgagcttgaatcctatccaccctggctactctctcagccctattcacaacttttaccttctgttagagctcctggaacttcaatcggtcatttgaaagaggacattagatcggattttggttttccaagtgattgtgctgtatgcacaggaaccactgatagtatagcagcttttttagcagctcgtgcaacacaacctgggaaagct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0006793 GO:0006796 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019150 GO:0019200 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044262 GO:0044424 GO:0044444 GO:0044464 GO:0046835 GO:0071704 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FGGY_C FGGY_N

Protein Analysis

201

Amino Acids

21.94

Weight (kDa)

5.67

Isoelectric Point (pI)

37.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002338)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21370 AT2G21370 AT2G21370 AT2G21370
fragaria_vesca	FvH4_2g10090 FvH4_2g10090 FvH4_2g10090 FvH4_2g10090
malus_domestica	MD10G1065800.v1.1
prunus_persica	Prupe.8G087700_v2.0.a1 Prupe.8G087700_v2.0.a1
pyrus_communis	pycom10g05120
rosa_chinensis	RchiOBHm_Chr3g0496591 RchiOBHm_Chr4g0423361 RchiOBHm_Chr6g0267041
rosa_laevigata	RLG00000003987 RLG00000014047 RLG00000018837 RLG00000028975
rosa_multiflora	Rmu_sc0013804.1_g000007 Rmu_sc0030781.1_g000001 Rmu_sc0033156.1_g000001 Rmu_sc0033555.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147730 Rroxscaffold_2G00147740 Rroxscaffold_7G00201210
rosa_rugosa	Rorug01G0215500 Rorug02G0305900
rosa_samantha	Rh2BG290800 Rh2BG290900 Rh2DG285900 Rh3AG330100 Rh3CG362900 Rh3DG366000 Rh5CG284800 Rh6CG099100 Rh6CG146300 Rh6CG146400 Rh7BG254600 Rh7BG468800
rosa_wichuraiana	Rw3G028900 Rw6G013010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	366
AclWI	GGATC	2 cut(s)	275, 386
AcuI	CTGAAG	1 cut(s)	398
AfiI	CCNNNNNNNGG	2 cut(s)	18, 96
AgsI	TTSAA	3 cut(s)	404, 477, 490
AjnI	CCWGG	4 cut(s)	263, 416, 466, 592
AluBI	AGCT	7 cut(s)	174, 256, 400, 464, 566, 578, 602
AluI	AGCT	7 cut(s)	174, 256, 400, 464, 566, 578, 602
Alw21I	GWGCWC	1 cut(s)	466
Alw26I	GTCTC	3 cut(s)	42, 145, 265
AlwI	GGATC	2 cut(s)	275, 386
AoxI	GGCC	2 cut(s)	9, 24
ApaI	GGGCCC	1 cut(s)	13
ApeKI	GCWGC	3 cut(s)	174, 563, 575
AspS9I	GGNCC	2 cut(s)	9, 10
BaeGI	GKGCMC	1 cut(s)	13
BanII	GRGCYC	2 cut(s)	13, 466
BauI	CACGAG	1 cut(s)	579
Bbv12I	GWGCWC	1 cut(s)	466
BbvI	GCAGC	3 cut(s)	161, 575, 587
BccI	CCATC	2 cut(s)	64, 89
BceAI	ACGGC	1 cut(s)	127
BciT130I	CCWGG	4 cut(s)	265, 418, 468, 594
BcoDI	GTCTC	3 cut(s)	42, 145, 265
BisI	GCNGC	3 cut(s)	175, 564, 576
BlsI	GCNGC	3 cut(s)	176, 565, 577
Bme1390I	CCNGG	4 cut(s)	265, 418, 468, 594
BmgT120I	GGNCC	2 cut(s)	9, 10
BmiI	GGNNCC	3 cut(s)	11, 238, 547
BmrFI	CCNGG	4 cut(s)	265, 418, 468, 594
BmsI	GCATC	1 cut(s)	172
Bpu10I	CCTNAGC	1 cut(s)	396
BsaI	GGTCTC	1 cut(s)	145
BsaJI	CCNNGG	2 cut(s)	416, 593
Bsc4I	CCNNNNNNNGG	2 cut(s)	18, 96
Bse3DI	GCAATG	1 cut(s)	204
BseBI	CCWGG	4 cut(s)	265, 418, 468, 594
BseDI	CCNNGG	2 cut(s)	416, 593
BseLI	CCNNNNNNNGG	2 cut(s)	18, 96
BseMI	GCAATG	1 cut(s)	204
BseMII	CTCAG	2 cut(s)	387, 443
BseRI	GAGGAG	1 cut(s)	201
BseSI	GKGCMC	1 cut(s)	13
BseXI	GCAGC	3 cut(s)	161, 575, 587
BsgI	GTGCAG	1 cut(s)	282
BshFI	GGCC	2 cut(s)	11, 26
BsiHKAI	GWGCWC	1 cut(s)	466
BslFI	GGGAC	1 cut(s)	112
BslI	CCNNNNNNNGG	2 cut(s)	18, 96
BsmAI	GTCTC	3 cut(s)	42, 145, 265
BsmFI	GGGAC	1 cut(s)	112
BsnI	GGCC	2 cut(s)	11, 26
Bso31I	GGTCTC	1 cut(s)	145
Bsp120I	GGGCCC	1 cut(s)	9
Bsp1286I	GDGCHC	2 cut(s)	13, 466
Bsp143I	GATC	3 cut(s)	280, 391, 503
BspANI	GGCC	2 cut(s)	11, 26
BspCNI	CTCAG	2 cut(s)	388, 442
BspLI	GGNNCC	3 cut(s)	11, 238, 547
BspPI	GGATC	2 cut(s)	275, 386
BspTNI	GGTCTC	1 cut(s)	145
BsrDI	GCAATG	1 cut(s)	204
BssECI	CCNNGG	2 cut(s)	416, 593
BssMI	GATC	3 cut(s)	280, 391, 503
BssSI	CACGAG	1 cut(s)	579
Bst2BI	CACGAG	1 cut(s)	579
Bst2UI	CCWGG	4 cut(s)	265, 418, 468, 594
Bst4CI	ACNGT	3 cut(s)	196, 226, 306
Bst6I	CTCTTC	1 cut(s)	38
BstAPI	GCANNNNNTGC	1 cut(s)	581
BstC8I	GCNNGC	1 cut(s)	254
BstDEI	CTNAG	2 cut(s)	396, 429
BstKTI	GATC	3 cut(s)	283, 394, 506
BstMAI	GTCTC	3 cut(s)	42, 145, 265
BstMBI	GATC	3 cut(s)	280, 391, 503
BstMWI	GCNNNNNNNGC	3 cut(s)	331, 572, 581
BstNI	CCWGG	4 cut(s)	265, 418, 468, 594
BstSCI	CCNGG	4 cut(s)	263, 416, 466, 592
BstSLI	GKGCMC	1 cut(s)	13
BstV1I	GCAGC	3 cut(s)	161, 575, 587
BsuRI	GGCC	2 cut(s)	11, 26
BtsIMutI	CAGTG	1 cut(s)	549
Cac8I	GCNNGC	1 cut(s)	254
Cfr13I	GGNCC	2 cut(s)	9, 10
CviAII	CATG	2 cut(s)	18, 341
DdeI	CTNAG	2 cut(s)	396, 429
DpnI	GATC	3 cut(s)	282, 393, 505
DpnII	GATC	3 cut(s)	280, 391, 503
Eam1104I	CTCTTC	1 cut(s)	38
EarI	CTCTTC	1 cut(s)	38
Ecl136II	GAGCTC	1 cut(s)	464
Eco24I	GRGCYC	2 cut(s)	13, 466
Eco31I	GGTCTC	1 cut(s)	145
Eco53kI	GAGCTC	1 cut(s)	464
Eco57I	CTGAAG	1 cut(s)	398
EcoICRI	GAGCTC	1 cut(s)	464
EcoRII	CCWGG	4 cut(s)	263, 416, 466, 592
EcoT38I	GRGCYC	2 cut(s)	13, 466
FaeI	CATG	2 cut(s)	21, 344
FaiI	YATR	8 cut(s)	19, 148, 222, 342, 366, 390, 538, 560
FaqI	GGGAC	1 cut(s)	112
FatI	CATG	2 cut(s)	17, 340
Fnu4HI	GCNGC	3 cut(s)	175, 564, 576
FriOI	GRGCYC	2 cut(s)	13, 466
Fsp4HI	GCNGC	3 cut(s)	175, 564, 576
GluI	GCNGC	3 cut(s)	175, 564, 576
HaeIII	GGCC	2 cut(s)	11, 26
Hin1II	CATG	2 cut(s)	21, 344
HincII	GTYRAC	1 cut(s)	124
HindII	GTYRAC	1 cut(s)	124
HindIII	AAGCTT	1 cut(s)	254
HinfI	GANTC	1 cut(s)	404
Hpy166II	GTNNAC	2 cut(s)	71, 124
Hpy188I	TCNGA	4 cut(s)	353, 361, 378, 508
Hpy188III	TCNNGA	1 cut(s)	395
Hpy8I	GTNNAC	2 cut(s)	71, 124
Hpy99I	CGWCG	1 cut(s)	196
HpyAV	CCTTC	3 cut(s)	16, 373, 462
HpyCH4III	ACNGT	3 cut(s)	196, 226, 306
HpyCH4V	TGCA	6 cut(s)	107, 252, 299, 310, 540, 584
HpyF10VI	GCNNNNNNNGC	3 cut(s)	331, 572, 581
HpyF3I	CTNAG	2 cut(s)	396, 429
Hsp92II	CATG	2 cut(s)	21, 344
Kzo9I	GATC	3 cut(s)	280, 391, 503
LmnI	GCTCC	2 cut(s)	214, 469
Lsp1109I	GCAGC	3 cut(s)	161, 575, 587
LweI	GCATC	1 cut(s)	172
MalI	GATC	3 cut(s)	282, 393, 505
MboI	GATC	3 cut(s)	280, 391, 503
MboII	GAAGA	3 cut(s)	25, 56, 329
MhlI	GDGCHC	2 cut(s)	13, 466
MnlI	CCTC	4 cut(s)	170, 222, 250, 487
MseI	TTAA	1 cut(s)	198
MspR9I	CCNGG	4 cut(s)	265, 418, 468, 594
MvaI	CCWGG	4 cut(s)	265, 418, 468, 594
MwoI	GCNNNNNNNGC	3 cut(s)	331, 572, 581
NdeII	GATC	3 cut(s)	280, 391, 503
NlaIII	CATG	2 cut(s)	21, 344
NlaIV	GGNNCC	3 cut(s)	11, 238, 547
PfeI	GAWTC	1 cut(s)	404
PfoI	TCCNGGA	1 cut(s)	466
PkrI	GCNGC	3 cut(s)	176, 565, 577
PsiI	TTATAA	1 cut(s)	366
Psp124BI	GAGCTC	1 cut(s)	466
Psp6I	CCWGG	4 cut(s)	263, 416, 466, 592
PspGI	CCWGG	4 cut(s)	263, 416, 466, 592
PspN4I	GGNNCC	3 cut(s)	11, 238, 547
PspOMI	GGGCCC	1 cut(s)	9
PspPI	GGNCC	2 cut(s)	9, 10
SacI	GAGCTC	1 cut(s)	466
SaqAI	TTAA	1 cut(s)	198
SatI	GCNGC	3 cut(s)	175, 564, 576
Sau3AI	GATC	3 cut(s)	280, 391, 503
Sau96I	GGNCC	2 cut(s)	9, 10
ScrFI	CCNGG	4 cut(s)	265, 418, 468, 594
SduI	GDGCHC	2 cut(s)	13, 466
SfaNI	GCATC	1 cut(s)	172
SstI	GAGCTC	1 cut(s)	466
StyD4I	CCNGG	4 cut(s)	263, 416, 466, 592
TaaI	ACNGT	3 cut(s)	196, 226, 306
TaqII	GACCGA	1 cut(s)	470
TfiI	GAWTC	1 cut(s)	404
Tru1I	TTAA	1 cut(s)	198
Tru9I	TTAA	1 cut(s)	198
TscAI	CASTG	1 cut(s)	556
TseI	GCWGC	3 cut(s)	174, 563, 575
TspDTI	ATGAA	2 cut(s)	6, 329
TspRI	CASTG	1 cut(s)	556

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.