Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002338

Physical Location & Seq

Genomic Coordinates Reverse (-)

37503082 .. 37506987

Gene Structure 3906 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018837

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGAAGAAGGGATCCACAGCTCAGGAGGAGATACATGAACTGCTACTGAGTTTTGCTGAAGCTGGAGCTACTGTTGTGAGACTAAGAGGGGATCCACTGGTGTTTGGAAGGGGTGGAGAGGAGATGGATTTTTTGCAAAAGCAAGGAATTCAAGTGCAAGTTATTCCAGATTGGCTTTTGTGGCTTCTTCATGGAAAACTCGGAGTGTCTGATTATAATAATGCTTTGAAGGTTGGTTATGATCCTGAGCTTGAATCCTATCCACCCTGGCTACTCTCTCAGCCCTATTCACAACTTTTACCTTCTGTTAGAGCTCCTGAAACTTCAATCGGTCATTTGAATGAGGACATTAGATTGGATTTTGGAACCACTGATAGTATAGCAGCTTTTTTAGCAGCTCGTGCAACACAACCTGGGAAAGCTGTAACTTCATTGGGTTCAACACTTGCCATAAAACTGCTGAGCACTACTAGGATTGAGGATGCACGGTTTAGGGTGTATAGTCATCTGCTTGATGATAAGTGGCATGTTGGAGGTGCTTCAAATACTGGTGGAGCAATTCTTACACAAATTTTCACTGACGAGCAACTGGAGAAATTGAGTGAACAGATTGATCCCATGGAAGCTTCTCCTCTAGACTATTACCCATTGCAATCAGTTGGTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0006793 GO:0006796 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019150 GO:0019200 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044262 GO:0044424 GO:0044444 GO:0044464 GO:0046835 GO:0071704 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FGGY_C FGGY_N

Protein Analysis

223

Amino Acids

24.44

Weight (kDa)

4.82

Isoelectric Point (pI)

36.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TP_methylase	PF00590	6 - 56	1.9e-07	Tetrapyrrole (Corrin/Porphyrin) Methylases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002338)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21370 AT2G21370 AT2G21370 AT2G21370
fragaria_vesca	FvH4_2g10090 FvH4_2g10090 FvH4_2g10090 FvH4_2g10090
malus_domestica	MD10G1065800.v1.1
prunus_persica	Prupe.8G087700_v2.0.a1 Prupe.8G087700_v2.0.a1
pyrus_communis	pycom10g05120
rosa_chinensis	RchiOBHm_Chr3g0496591 RchiOBHm_Chr4g0423361 RchiOBHm_Chr6g0267041
rosa_laevigata	RLG00000003987 RLG00000014047 RLG00000018837 RLG00000028975
rosa_multiflora	Rmu_sc0013804.1_g000007 Rmu_sc0030781.1_g000001 Rmu_sc0033156.1_g000001 Rmu_sc0033555.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147730 Rroxscaffold_2G00147740 Rroxscaffold_7G00201210
rosa_rugosa	Rorug01G0215500 Rorug02G0305900
rosa_samantha	Rh2BG290800 Rh2BG290900 Rh2DG285900 Rh3AG330100 Rh3CG362900 Rh3DG366000 Rh5CG284800 Rh6CG099100 Rh6CG146300 Rh6CG146400 Rh7BG254600 Rh7BG468800
rosa_wichuraiana	Rw3G028900 Rw6G013010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	216
AclWI	GGATC	6 cut(s)	6, 19, 86, 99, 236, 608
AcsI	RAATTY	2 cut(s)	147, 570
AcuI	CTGAAG	1 cut(s)	78
AgsI	TTSAA	7 cut(s)	152, 229, 254, 327, 340, 441, 543
AjnI	CCWGG	2 cut(s)	266, 412
AluBI	AGCT	9 cut(s)	20, 62, 68, 250, 314, 386, 398, 422, 626
AluI	AGCT	9 cut(s)	20, 62, 68, 250, 314, 386, 398, 422, 626
Alw21I	GWGCWC	2 cut(s)	316, 467
Alw26I	GTCTC	1 cut(s)	73
AlwI	GGATC	6 cut(s)	6, 19, 86, 99, 236, 608
ApeKI	GCWGC	2 cut(s)	383, 395
ApoI	RAATTY	2 cut(s)	147, 570
BamHI	GGATCC	2 cut(s)	11, 91
BanII	GRGCYC	1 cut(s)	316
BauI	CACGAG	1 cut(s)	399
Bbv12I	GWGCWC	2 cut(s)	316, 467
BbvI	GCAGC	2 cut(s)	395, 407
BccI	CCATC	1 cut(s)	118
BciT130I	CCWGG	2 cut(s)	268, 414
BcoDI	GTCTC	1 cut(s)	73
BfaI	CTAG	2 cut(s)	471, 635
BisI	GCNGC	2 cut(s)	384, 396
BlpI	GCTNAGC	1 cut(s)	461
BlsI	GCNGC	2 cut(s)	385, 397
Bme1390I	CCNGG	2 cut(s)	268, 414
BmiI	GGNNCC	3 cut(s)	13, 93, 367
BmrFI	CCNGG	2 cut(s)	268, 414
BmsI	GCATC	1 cut(s)	472
BpmI	CTGGAG	2 cut(s)	84, 611
Bpu10I	CCTNAGC	2 cut(s)	21, 246
Bpu1102I	GCTNAGC	1 cut(s)	461
BsaJI	CCNNGG	3 cut(s)	266, 413, 618
BsaXI	ACNNNNNCTCC	2 cut(s)	57, 87
Bse1I	ACTGG	3 cut(s)	102, 553, 594
Bse3DI	GCAATG	1 cut(s)	647
BseBI	CCWGG	2 cut(s)	268, 414
BseDI	CCNNGG	3 cut(s)	266, 413, 618
BseGI	GGATG	1 cut(s)	487
BseMI	GCAATG	1 cut(s)	647
BseMII	CTCAG	5 cut(s)	35, 38, 237, 293, 452
BseNI	ACTGG	3 cut(s)	102, 553, 594
BseRI	GAGGAG	3 cut(s)	41, 134, 621
BseXI	GCAGC	2 cut(s)	395, 407
BsiHKAI	GWGCWC	2 cut(s)	316, 467
BsmAI	GTCTC	1 cut(s)	73
Bsp1286I	GDGCHC	2 cut(s)	316, 467
Bsp143I	GATC	4 cut(s)	11, 91, 241, 613
Bsp1720I	GCTNAGC	1 cut(s)	461
Bsp19I	CCATGG	1 cut(s)	618
BspCNI	CTCAG	5 cut(s)	34, 39, 238, 292, 453
BspLI	GGNNCC	3 cut(s)	13, 93, 367
BspPI	GGATC	6 cut(s)	6, 19, 86, 99, 236, 608
BsrDI	GCAATG	1 cut(s)	647
BsrI	ACTGG	3 cut(s)	102, 553, 594
BssECI	CCNNGG	3 cut(s)	266, 413, 618
BssMI	GATC	4 cut(s)	11, 91, 241, 613
BssSI	CACGAG	1 cut(s)	399
BssT1I	CCWWGG	1 cut(s)	618
Bst2BI	CACGAG	1 cut(s)	399
Bst2UI	CCWGG	2 cut(s)	268, 414
Bst4CI	ACNGT	2 cut(s)	73, 489
BstAPI	GCANNNNNTGC	1 cut(s)	401
BstDEI	CTNAG	6 cut(s)	21, 47, 83, 246, 279, 461
BstDSI	CCRYGG	1 cut(s)	618
BstF5I	GGATG	1 cut(s)	487
BstKTI	GATC	4 cut(s)	14, 94, 244, 616
BstMAI	GTCTC	1 cut(s)	73
BstMBI	GATC	4 cut(s)	11, 91, 241, 613
BstMWI	GCNNNNNNNGC	3 cut(s)	181, 392, 401
BstNI	CCWGG	2 cut(s)	268, 414
BstNSI	RCATGY	1 cut(s)	530
BstSCI	CCNGG	2 cut(s)	266, 412
BstV1I	GCAGC	2 cut(s)	395, 407
BstX2I	RGATCY	2 cut(s)	11, 91
BstYI	RGATCY	2 cut(s)	11, 91
BtgI	CCRYGG	1 cut(s)	618
BtsCI	GGATG	1 cut(s)	487
BtsIMutI	CAGTG	3 cut(s)	95, 369, 576
CviAII	CATG	4 cut(s)	35, 191, 527, 619
DdeI	CTNAG	6 cut(s)	21, 47, 83, 246, 279, 461
DpnI	GATC	4 cut(s)	13, 93, 243, 615
DpnII	GATC	4 cut(s)	11, 91, 241, 613
Ecl136II	GAGCTC	1 cut(s)	314
Eco130I	CCWWGG	1 cut(s)	618
Eco24I	GRGCYC	1 cut(s)	316
Eco53kI	GAGCTC	1 cut(s)	314
Eco57I	CTGAAG	1 cut(s)	78
EcoICRI	GAGCTC	1 cut(s)	314
EcoRI	GAATTC	1 cut(s)	147
EcoRII	CCWGG	2 cut(s)	266, 412
EcoT14I	CCWWGG	1 cut(s)	618
EcoT38I	GRGCYC	1 cut(s)	316
ErhI	CCWWGG	1 cut(s)	618
FaeI	CATG	4 cut(s)	38, 194, 530, 622
FaiI	YATR	9 cut(s)	36, 192, 216, 240, 380, 452, 501, 528, 620
FatI	CATG	4 cut(s)	34, 190, 526, 618
Fnu4HI	GCNGC	2 cut(s)	384, 396
FokI	GGATG	1 cut(s)	494
FriOI	GRGCYC	1 cut(s)	316
Fsp4HI	GCNGC	2 cut(s)	384, 396
FspBI	CTAG	2 cut(s)	471, 635
GluI	GCNGC	2 cut(s)	384, 396
GsuI	CTGGAG	2 cut(s)	84, 611
Hin1II	CATG	4 cut(s)	38, 194, 530, 622
HindIII	AAGCTT	1 cut(s)	624
HinfI	GANTC	1 cut(s)	254
Hpy166II	GTNNAC	1 cut(s)	605
Hpy188I	TCNGA	2 cut(s)	203, 211
Hpy188III	TCNNGA	5 cut(s)	23, 167, 245, 317, 635
Hpy8I	GTNNAC	1 cut(s)	605
HpyAV	CCTTC	3 cut(s)	102, 223, 312
HpyCH4III	ACNGT	2 cut(s)	73, 489
HpyCH4V	TGCA	5 cut(s)	136, 157, 404, 485, 652
HpyF10VI	GCNNNNNNNGC	3 cut(s)	181, 392, 401
HpyF3I	CTNAG	6 cut(s)	21, 47, 83, 246, 279, 461
Hsp92II	CATG	4 cut(s)	38, 194, 530, 622
Kzo9I	GATC	4 cut(s)	11, 91, 241, 613
LmnI	GCTCC	3 cut(s)	65, 319, 554
Lsp1109I	GCAGC	2 cut(s)	395, 407
LweI	GCATC	1 cut(s)	472
MaeI	CTAG	2 cut(s)	471, 635
MaeIII	GTNAC	1 cut(s)	424
MalI	GATC	4 cut(s)	13, 93, 243, 615
MboI	GATC	4 cut(s)	11, 91, 241, 613
MboII	GAAGA	2 cut(s)	16, 179
MflI	RGATCY	2 cut(s)	11, 91
MhlI	GDGCHC	2 cut(s)	316, 467
MluCI	AATT	4 cut(s)	147, 558, 570, 596
MmeI	TCCRAC	1 cut(s)	511
MnlI	CCTC	7 cut(s)	19, 80, 112, 337, 472, 527, 642
MslI	CAYNNNNRTG	1 cut(s)	339
MspR9I	CCNGG	2 cut(s)	268, 414
MvaI	CCWGG	2 cut(s)	268, 414
MwoI	GCNNNNNNNGC	3 cut(s)	181, 392, 401
NcoI	CCATGG	1 cut(s)	618
NdeII	GATC	4 cut(s)	11, 91, 241, 613
NlaIII	CATG	4 cut(s)	38, 194, 530, 622
NlaIV	GGNNCC	3 cut(s)	13, 93, 367
NspI	RCATGY	1 cut(s)	530
PfeI	GAWTC	1 cut(s)	254
PkrI	GCNGC	2 cut(s)	385, 397
PsiI	TTATAA	1 cut(s)	216
Psp124BI	GAGCTC	1 cut(s)	316
Psp6I	CCWGG	2 cut(s)	266, 412
PspGI	CCWGG	2 cut(s)	266, 412
PspN4I	GGNNCC	3 cut(s)	13, 93, 367
PsuI	RGATCY	2 cut(s)	11, 91
RseI	CAYNNNNRTG	1 cut(s)	339
SacI	GAGCTC	1 cut(s)	316
SatI	GCNGC	2 cut(s)	384, 396
Sau3AI	GATC	4 cut(s)	11, 91, 241, 613
ScrFI	CCNGG	2 cut(s)	268, 414
SduI	GDGCHC	2 cut(s)	316, 467
SfaNI	GCATC	1 cut(s)	472
SmiMI	CAYNNNNRTG	1 cut(s)	339
Sse9I	AATT	4 cut(s)	147, 558, 570, 596
SspMI	CTAG	2 cut(s)	471, 635
SstI	GAGCTC	1 cut(s)	316
StyD4I	CCNGG	2 cut(s)	266, 412
StyI	CCWWGG	1 cut(s)	618
TaaI	ACNGT	2 cut(s)	73, 489
TaqII	GACCGA	1 cut(s)	320
TasI	AATT	4 cut(s)	147, 558, 570, 596
TfiI	GAWTC	1 cut(s)	254
TscAI	CASTG	3 cut(s)	102, 376, 583
TseI	GCWGC	2 cut(s)	383, 395
TspDTI	ATGAA	4 cut(s)	17, 51, 179, 420
TspRI	CASTG	3 cut(s)	102, 376, 583
XapI	RAATTY	2 cut(s)	147, 570
XbaI	TCTAGA	1 cut(s)	634
XceI	RCATGY	1 cut(s)	530
XspI	CTAG	2 cut(s)	471, 635

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.