Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0033156.1

Orthogroup ID

OG0002338

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 499

Gene Structure 499 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0033156.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 397 bp

gttatggagacctttcctctacaatgagagctgccctgatgctttaccgacggttaaatccattgctcctccaaaccatacggtctgctctggttcctctactctgtgcaagcttgtctcctggtgggagaatgatgatccaaataaacaatctgcactactgttgcaccaagcagattggcttttgtggcttcttcatggaaaactcggagtgtctgattataataatgctctgaaggttggttatgatcctgagcttgaatcctatccaccctggctactctctcagccctattcacaacttttaccttctgttagagctcctggaacttcaatcggtcatttgaaagaggacattagatcggattttggtaaaattttcttgcaattggcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0006793 GO:0006796 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019150 GO:0019200 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044262 GO:0044424 GO:0044444 GO:0044464 GO:0046835 GO:0071704 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FGGY_C FGGY_N

Protein Analysis

131

Amino Acids

14.73

Weight (kDa)

5.72

Isoelectric Point (pI)

50.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002338)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21370 AT2G21370 AT2G21370 AT2G21370
fragaria_vesca	FvH4_2g10090 FvH4_2g10090 FvH4_2g10090 FvH4_2g10090
malus_domestica	MD10G1065800.v1.1
prunus_persica	Prupe.8G087700_v2.0.a1 Prupe.8G087700_v2.0.a1
pyrus_communis	pycom10g05120
rosa_chinensis	RchiOBHm_Chr3g0496591 RchiOBHm_Chr4g0423361 RchiOBHm_Chr6g0267041
rosa_laevigata	RLG00000003987 RLG00000014047 RLG00000018837 RLG00000028975
rosa_multiflora	Rmu_sc0013804.1_g000007 Rmu_sc0030781.1_g000001 Rmu_sc0033156.1_g000001 Rmu_sc0033555.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147730 Rroxscaffold_2G00147740 Rroxscaffold_7G00201210
rosa_rugosa	Rorug01G0215500 Rorug02G0305900
rosa_samantha	Rh2BG290800 Rh2BG290900 Rh2DG285900 Rh3AG330100 Rh3CG362900 Rh3DG366000 Rh5CG284800 Rh6CG099100 Rh6CG146300 Rh6CG146400 Rh7BG254600 Rh7BG468800
rosa_wichuraiana	Rw3G028900 Rw6G013010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	223
AclWI	GGATC	2 cut(s)	132, 243
AcsI	RAATTY	1 cut(s)	376
AcuI	CTGAAG	1 cut(s)	255
AgsI	TTSAA	3 cut(s)	261, 334, 347
AjnI	CCWGG	3 cut(s)	120, 273, 323
AluBI	AGCT	4 cut(s)	31, 113, 257, 321
AluI	AGCT	4 cut(s)	31, 113, 257, 321
Alw21I	GWGCWC	1 cut(s)	323
Alw26I	GTCTC	2 cut(s)	2, 122
AlwI	GGATC	2 cut(s)	132, 243
ApeKI	GCWGC	1 cut(s)	31
ApoI	RAATTY	1 cut(s)	376
BanII	GRGCYC	1 cut(s)	323
Bbv12I	GWGCWC	1 cut(s)	323
BbvI	GCAGC	1 cut(s)	18
BciT130I	CCWGG	3 cut(s)	122, 275, 325
BcoDI	GTCTC	2 cut(s)	2, 122
BisI	GCNGC	1 cut(s)	32
BlsI	GCNGC	1 cut(s)	33
Bme1390I	CCNGG	3 cut(s)	122, 275, 325
BmiI	GGNNCC	1 cut(s)	95
BmrFI	CCNGG	3 cut(s)	122, 275, 325
BmsI	GCATC	1 cut(s)	29
Bpu10I	CCTNAGC	1 cut(s)	253
BsaI	GGTCTC	1 cut(s)	2
BsaJI	CCNNGG	1 cut(s)	273
Bse3DI	GCAATG	1 cut(s)	61
BseBI	CCWGG	3 cut(s)	122, 275, 325
BseDI	CCNNGG	1 cut(s)	273
BseMI	GCAATG	1 cut(s)	61
BseMII	CTCAG	2 cut(s)	244, 300
BseRI	GAGGAG	1 cut(s)	58
BseXI	GCAGC	1 cut(s)	18
BsgI	GTGCAG	1 cut(s)	139
BsiHKAI	GWGCWC	1 cut(s)	323
BsmAI	GTCTC	2 cut(s)	2, 122
Bso31I	GGTCTC	1 cut(s)	2
Bsp1286I	GDGCHC	1 cut(s)	323
Bsp143I	GATC	3 cut(s)	137, 248, 360
BspCNI	CTCAG	2 cut(s)	245, 299
BspLI	GGNNCC	1 cut(s)	95
BspPI	GGATC	2 cut(s)	132, 243
BspTNI	GGTCTC	1 cut(s)	2
BsrDI	GCAATG	1 cut(s)	61
BssECI	CCNNGG	1 cut(s)	273
BssMI	GATC	3 cut(s)	137, 248, 360
Bst2UI	CCWGG	3 cut(s)	122, 275, 325
Bst4CI	ACNGT	3 cut(s)	53, 83, 163
BstC8I	GCNNGC	1 cut(s)	111
BstDEI	CTNAG	2 cut(s)	253, 286
BstKTI	GATC	3 cut(s)	140, 251, 363
BstMAI	GTCTC	2 cut(s)	2, 122
BstMBI	GATC	3 cut(s)	137, 248, 360
BstMWI	GCNNNNNNNGC	1 cut(s)	188
BstNI	CCWGG	3 cut(s)	122, 275, 325
BstSCI	CCNGG	3 cut(s)	120, 273, 323
BstV1I	GCAGC	1 cut(s)	18
Cac8I	GCNNGC	1 cut(s)	111
CviAII	CATG	1 cut(s)	198
CviJI	RGCY	8 cut(s)	31, 113, 182, 191, 257, 278, 290, 321
CviKI_1	RGCY	8 cut(s)	31, 113, 182, 191, 257, 278, 290, 321
DdeI	CTNAG	2 cut(s)	253, 286
DpnI	GATC	3 cut(s)	139, 250, 362
DpnII	GATC	3 cut(s)	137, 248, 360
Ecl136II	GAGCTC	1 cut(s)	321
Eco24I	GRGCYC	1 cut(s)	323
Eco31I	GGTCTC	1 cut(s)	2
Eco53kI	GAGCTC	1 cut(s)	321
Eco57I	CTGAAG	1 cut(s)	255
EcoICRI	GAGCTC	1 cut(s)	321
EcoRII	CCWGG	3 cut(s)	120, 273, 323
EcoT38I	GRGCYC	1 cut(s)	323
FaeI	CATG	1 cut(s)	201
FaiI	YATR	6 cut(s)	5, 79, 199, 223, 247, 395
FatI	CATG	1 cut(s)	197
Fnu4HI	GCNGC	1 cut(s)	32
FriOI	GRGCYC	1 cut(s)	323
Fsp4HI	GCNGC	1 cut(s)	32
GluI	GCNGC	1 cut(s)	32
Hin1II	CATG	1 cut(s)	201
HindIII	AAGCTT	1 cut(s)	111
HinfI	GANTC	1 cut(s)	261
Hpy188I	TCNGA	4 cut(s)	210, 218, 235, 365
Hpy188III	TCNNGA	1 cut(s)	252
Hpy99I	CGWCG	1 cut(s)	53
HpyAV	CCTTC	2 cut(s)	230, 319
HpyCH4III	ACNGT	3 cut(s)	53, 83, 163
HpyCH4V	TGCA	4 cut(s)	109, 156, 167, 386
HpyF10VI	GCNNNNNNNGC	1 cut(s)	188
HpyF3I	CTNAG	2 cut(s)	253, 286
Hsp92II	CATG	1 cut(s)	201
Kzo9I	GATC	3 cut(s)	137, 248, 360
LmnI	GCTCC	2 cut(s)	71, 326
LpnPI	CCDG	9 cut(s)	49, 76, 107, 134, 260, 265, 287, 310, 337
Lsp1109I	GCAGC	1 cut(s)	18
LweI	GCATC	1 cut(s)	29
MalI	GATC	3 cut(s)	139, 250, 362
MboI	GATC	3 cut(s)	137, 248, 360
MboII	GAAGA	1 cut(s)	186
MfeI	CAATTG	1 cut(s)	387
MhlI	GDGCHC	1 cut(s)	323
MluCI	AATT	2 cut(s)	376, 387
MnlI	CCTC	4 cut(s)	27, 79, 107, 344
MseI	TTAA	1 cut(s)	55
MspR9I	CCNGG	3 cut(s)	122, 275, 325
MunI	CAATTG	1 cut(s)	387
MvaI	CCWGG	3 cut(s)	122, 275, 325
MwoI	GCNNNNNNNGC	1 cut(s)	188
NdeII	GATC	3 cut(s)	137, 248, 360
NlaIII	CATG	1 cut(s)	201
NlaIV	GGNNCC	1 cut(s)	95
PfeI	GAWTC	1 cut(s)	261
PfoI	TCCNGGA	1 cut(s)	323
PkrI	GCNGC	1 cut(s)	33
PsiI	TTATAA	1 cut(s)	223
Psp124BI	GAGCTC	1 cut(s)	323
Psp6I	CCWGG	3 cut(s)	120, 273, 323
PspGI	CCWGG	3 cut(s)	120, 273, 323
PspN4I	GGNNCC	1 cut(s)	95
SacI	GAGCTC	1 cut(s)	323
SaqAI	TTAA	1 cut(s)	55
SatI	GCNGC	1 cut(s)	32
Sau3AI	GATC	3 cut(s)	137, 248, 360
ScrFI	CCNGG	3 cut(s)	122, 275, 325
SduI	GDGCHC	1 cut(s)	323
SetI	ASST	7 cut(s)	14, 33, 115, 241, 259, 311, 323
SfaNI	GCATC	1 cut(s)	29
Sse9I	AATT	2 cut(s)	376, 387
SstI	GAGCTC	1 cut(s)	323
StyD4I	CCNGG	3 cut(s)	120, 273, 323
TaaI	ACNGT	3 cut(s)	53, 83, 163
TaqII	GACCGA	1 cut(s)	327
TasI	AATT	2 cut(s)	376, 387
TfiI	GAWTC	1 cut(s)	261
Tru1I	TTAA	1 cut(s)	55
Tru9I	TTAA	1 cut(s)	55
TseI	GCWGC	1 cut(s)	31
TspDTI	ATGAA	1 cut(s)	186
XapI	RAATTY	1 cut(s)	376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.