Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0002338

Physical Location & Seq

Genomic Coordinates Reverse (-)

47434534 .. 47435306

Gene Structure 773 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG330100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGCATTTTCCAAGTGATTGTGCTGTATGCACTGGAACCATTAATAGTATAGCAGCTCGTGCAACACAACCTGGGAAAGCTGTAACTTCTTTGGGTTCAACACTTGCCATAAAACTGCTGAGCACTACTAGGATTGAGGATGCACGGTTTGGGGTGTATAGTCATCACCTTGATGATAAGTGGCTTGTTGGAGGTGCTTTAAATACTGGTAGAGCAGTTCTTAGACAAAATTTCACTGACAAGAAACTGGAGAAATTGAGTGAACAGATTGATCCCATGGAAGCTTGTTGTGTTTTCTGGTGGCAGGTTAAGCTTGTAAAGTGCCTTGTGCCAAATATTGTGGTTGATATATCCTTCAATCAATTAGGAGGGCTATGTACGTTATGCTTTCTCGAGCAGGTAGTCTTCCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0006793 GO:0006796 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019150 GO:0019200 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044262 GO:0044424 GO:0044444 GO:0044464 GO:0046835 GO:0071704 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FGGY_C FGGY_N

Protein Analysis

137

Amino Acids

15.11

Weight (kDa)

7.6

Isoelectric Point (pI)

29.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002338)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21370 AT2G21370 AT2G21370 AT2G21370
fragaria_vesca	FvH4_2g10090 FvH4_2g10090 FvH4_2g10090 FvH4_2g10090
malus_domestica	MD10G1065800.v1.1
prunus_persica	Prupe.8G087700_v2.0.a1 Prupe.8G087700_v2.0.a1
pyrus_communis	pycom10g05120
rosa_chinensis	RchiOBHm_Chr3g0496591 RchiOBHm_Chr4g0423361 RchiOBHm_Chr6g0267041
rosa_laevigata	RLG00000003987 RLG00000014047 RLG00000018837 RLG00000028975
rosa_multiflora	Rmu_sc0013804.1_g000007 Rmu_sc0030781.1_g000001 Rmu_sc0033156.1_g000001 Rmu_sc0033555.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147730 Rroxscaffold_2G00147740 Rroxscaffold_7G00201210
rosa_rugosa	Rorug01G0215500 Rorug02G0305900
rosa_samantha	Rh2BG290800 Rh2BG290900 Rh2DG285900 Rh3AG330100 Rh3CG362900 Rh3DG366000 Rh5CG284800 Rh6CG099100 Rh6CG146300 Rh6CG146400 Rh7BG254600 Rh7BG468800
rosa_wichuraiana	Rw3G028900 Rw6G013010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	295, 388
AclWI	GGATC	1 cut(s)	266
AcsI	RAATTY	1 cut(s)	229
AfaI	GTAC	1 cut(s)	379
AgsI	TTSAA	2 cut(s)	99, 358
AjnI	CCWGG	1 cut(s)	70
AluBI	AGCT	4 cut(s)	56, 80, 284, 313
AluI	AGCT	4 cut(s)	56, 80, 284, 313
Alw21I	GWGCWC	1 cut(s)	125
AlwI	GGATC	1 cut(s)	266
Ama87I	CYCGRG	1 cut(s)	392
ApeKI	GCWGC	1 cut(s)	53
ApoI	RAATTY	1 cut(s)	229
AseI	ATTAAT	1 cut(s)	42
AsuHPI	GGTGA	1 cut(s)	158
AvaI	CYCGRG	1 cut(s)	392
BauI	CACGAG	1 cut(s)	57
BbsI	GAAGAC	1 cut(s)	397
Bbv12I	GWGCWC	1 cut(s)	125
BbvI	GCAGC	1 cut(s)	65
BciT130I	CCWGG	1 cut(s)	72
BfaI	CTAG	1 cut(s)	129
BfuAI	ACCTGC	2 cut(s)	295, 388
BisI	GCNGC	1 cut(s)	54
BlpI	GCTNAGC	1 cut(s)	119
BlsI	GCNGC	1 cut(s)	55
Bme1390I	CCNGG	1 cut(s)	72
BmeT110I	CYCGRG	1 cut(s)	392
BmiI	GGNNCC	1 cut(s)	37
BmrFI	CCNGG	1 cut(s)	72
BmsI	GCATC	1 cut(s)	130
BpiI	GAAGAC	1 cut(s)	397
BpmI	CTGGAG	1 cut(s)	269
Bpu1102I	GCTNAGC	1 cut(s)	119
BsaJI	CCNNGG	2 cut(s)	71, 276
Bse1I	ACTGG	3 cut(s)	37, 211, 252
BseBI	CCWGG	1 cut(s)	72
BseDI	CCNNGG	2 cut(s)	71, 276
BseGI	GGATG	1 cut(s)	145
BseMII	CTCAG	1 cut(s)	110
BseNI	ACTGG	3 cut(s)	37, 211, 252
BseXI	GCAGC	1 cut(s)	65
BsiHKAI	GWGCWC	1 cut(s)	125
BsiHKCI	CYCGRG	1 cut(s)	392
BsoBI	CYCGRG	1 cut(s)	392
Bsp1286I	GDGCHC	1 cut(s)	125
Bsp143I	GATC	1 cut(s)	271
Bsp1720I	GCTNAGC	1 cut(s)	119
Bsp19I	CCATGG	1 cut(s)	276
BspCNI	CTCAG	1 cut(s)	111
BspLI	GGNNCC	1 cut(s)	37
BspMI	ACCTGC	2 cut(s)	295, 388
BspPI	GGATC	1 cut(s)	266
BsrI	ACTGG	3 cut(s)	37, 211, 252
BssECI	CCNNGG	2 cut(s)	71, 276
BssMI	GATC	1 cut(s)	271
BssSI	CACGAG	1 cut(s)	57
BssT1I	CCWWGG	1 cut(s)	276
Bst2BI	CACGAG	1 cut(s)	57
Bst2UI	CCWGG	1 cut(s)	72
Bst4CI	ACNGT	1 cut(s)	147
BstAPI	GCANNNNNTGC	1 cut(s)	59
BstDEI	CTNAG	2 cut(s)	119, 221
BstDSI	CCRYGG	1 cut(s)	276
BstF5I	GGATG	1 cut(s)	145
BstKTI	GATC	1 cut(s)	274
BstMBI	GATC	1 cut(s)	271
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 310
BstNI	CCWGG	1 cut(s)	72
BstSCI	CCNGG	1 cut(s)	70
BstV1I	GCAGC	1 cut(s)	65
BstV2I	GAAGAC	1 cut(s)	397
BtgI	CCRYGG	1 cut(s)	276
BtsCI	GGATG	1 cut(s)	145
BtsIMutI	CAGTG	2 cut(s)	30, 234
BveI	ACCTGC	2 cut(s)	295, 388
Csp6I	GTAC	1 cut(s)	378
CspCI	CAANNNNNGTGG	2 cut(s)	321, 356
CviAII	CATG	1 cut(s)	277
CviJI	RGCY	6 cut(s)	56, 80, 184, 284, 313, 373
CviKI_1	RGCY	6 cut(s)	56, 80, 184, 284, 313, 373
CviQI	GTAC	1 cut(s)	378
DdeI	CTNAG	2 cut(s)	119, 221
DpnI	GATC	1 cut(s)	273
DpnII	GATC	1 cut(s)	271
DraI	TTTAAA	1 cut(s)	201
Eco130I	CCWWGG	1 cut(s)	276
Eco88I	CYCGRG	1 cut(s)	392
EcoRII	CCWGG	1 cut(s)	70
EcoT14I	CCWWGG	1 cut(s)	276
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	276
FaeI	CATG	1 cut(s)	280
FaiI	YATR	8 cut(s)	28, 50, 110, 159, 278, 350, 376, 385
FatI	CATG	1 cut(s)	276
Fnu4HI	GCNGC	1 cut(s)	54
FokI	GGATG	1 cut(s)	152
Fsp4HI	GCNGC	1 cut(s)	54
FspBI	CTAG	1 cut(s)	129
GluI	GCNGC	1 cut(s)	54
GsuI	CTGGAG	1 cut(s)	269
Hin1II	CATG	1 cut(s)	280
HindIII	AAGCTT	2 cut(s)	282, 311
HphI	GGTGA	1 cut(s)	158
Hpy166II	GTNNAC	1 cut(s)	263
Hpy188III	TCNNGA	1 cut(s)	392
Hpy8I	GTNNAC	1 cut(s)	263
HpyAV	CCTTC	1 cut(s)	364
HpyCH4III	ACNGT	1 cut(s)	147
HpyCH4IV	ACGT	1 cut(s)	380
HpyCH4V	TGCA	4 cut(s)	4, 30, 62, 143
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 310
HpyF3I	CTNAG	2 cut(s)	119, 221
HpySE526I	ACGT	1 cut(s)	380
Hsp92II	CATG	1 cut(s)	280
Kzo9I	GATC	1 cut(s)	271
LpnPI	CCDG	8 cut(s)	18, 57, 84, 192, 233, 283, 290, 383
Lsp1109I	GCAGC	1 cut(s)	65
LweI	GCATC	1 cut(s)	130
MaeI	CTAG	1 cut(s)	129
MaeII	ACGT	1 cut(s)	380
MaeIII	GTNAC	1 cut(s)	82
MalI	GATC	1 cut(s)	273
MboI	GATC	1 cut(s)	271
MboII	GAAGA	1 cut(s)	397
MhlI	GDGCHC	1 cut(s)	125
MluCI	AATT	3 cut(s)	229, 254, 362
MmeI	TCCRAC	1 cut(s)	169
MnlI	CCTC	3 cut(s)	130, 185, 362
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	3 cut(s)	42, 200, 309
MslI	CAYNNNNRTG	1 cut(s)	171
MspR9I	CCNGG	1 cut(s)	72
MvaI	CCWGG	1 cut(s)	72
MwoI	GCNNNNNNNGC	2 cut(s)	59, 310
NcoI	CCATGG	1 cut(s)	276
NdeII	GATC	1 cut(s)	271
NlaIII	CATG	1 cut(s)	280
NlaIV	GGNNCC	1 cut(s)	37
NsiI	ATGCAT	1 cut(s)	6
PaeR7I	CTCGAG	1 cut(s)	392
PkrI	GCNGC	1 cut(s)	55
PshBI	ATTAAT	1 cut(s)	42
Psp6I	CCWGG	1 cut(s)	70
PspGI	CCWGG	1 cut(s)	70
PspN4I	GGNNCC	1 cut(s)	37
RsaI	GTAC	1 cut(s)	379
RsaNI	GTAC	1 cut(s)	378
RseI	CAYNNNNRTG	1 cut(s)	171
SaqAI	TTAA	3 cut(s)	42, 200, 309
SatI	GCNGC	1 cut(s)	54
Sau3AI	GATC	1 cut(s)	271
ScrFI	CCNGG	1 cut(s)	72
SduI	GDGCHC	1 cut(s)	125
SfaNI	GCATC	1 cut(s)	130
Sfr274I	CTCGAG	1 cut(s)	392
SlaI	CTCGAG	1 cut(s)	392
SmiMI	CAYNNNNRTG	1 cut(s)	171
SmlI	CTYRAG	1 cut(s)	392
SmoI	CTYRAG	1 cut(s)	392
Sse9I	AATT	3 cut(s)	229, 254, 362
SspI	AATATT	1 cut(s)	337
SspMI	CTAG	1 cut(s)	129
StyD4I	CCNGG	1 cut(s)	70
StyI	CCWWGG	1 cut(s)	276
TaaI	ACNGT	1 cut(s)	147
TaiI	ACGT	1 cut(s)	383
TaqI	TCGA	1 cut(s)	393
TasI	AATT	3 cut(s)	229, 254, 362
Tru1I	TTAA	3 cut(s)	42, 200, 309
Tru9I	TTAA	3 cut(s)	42, 200, 309
TscAI	CASTG	2 cut(s)	37, 241
TseI	GCWGC	1 cut(s)	53
TspRI	CASTG	2 cut(s)	37, 241
VspI	ATTAAT	1 cut(s)	42
XapI	RAATTY	1 cut(s)	229
XhoI	CTCGAG	1 cut(s)	392
XspI	CTAG	1 cut(s)	129
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.