FvH4_2g14940

Gibberellin regulated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0001842
Physical Location & Seq
Reverse (-)
13120621 .. 13121574
954 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g14940.t1

Sequence Viewer

Length: 282 bp
ATGAACGCACCAGCCCCTCTTCCCATTTTTCGGCCACCACCACCAGAGCCTCATCGATATCCCTACTTTAATAAAGCTGCAGTGTGCAGATGGTTGTGTGATCGGAGGTGTGCACTTGCAGTTGATGAGAAAAAGAAAGCGTGCAAGGACGCATGCATGACATGTTGTGACCGCTGCAACTGTGTTCTAGCCGGACCTCCTGGCTTCAACAGAGAAACATGTGGCCCCTGCTACACTCGATTGTTTGTTCTAGTCATACTATACAACTTCGGATGCCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GASA

Protein Analysis

94

Amino Acids

10.49

Weight (kDa)

8.78

Isoelectric Point (pI)

62.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GASA PF02704 29 - 81 4.8e-10 Gibberellin regulated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 172
AcoI YGGCCR 1 cut(s) 32
AfiI CCNNNNNNNGG 1 cut(s) 30
AflIII ACRYGT 2 cut(s) 161, 218
AgsI TTSAA 1 cut(s) 208
AjnI CCWGG 1 cut(s) 199
AluBI AGCT 1 cut(s) 77
AluI AGCT 1 cut(s) 77
Alw21I GWGCWC 1 cut(s) 115
Alw44I GTGCAC 1 cut(s) 111
AoxI GGCC 2 cut(s) 32, 223
ApaLI GTGCAC 1 cut(s) 111
ApeKI GCWGC 2 cut(s) 77, 174
AspS9I GGNCC 2 cut(s) 194, 224
AvaII GGWCC 1 cut(s) 194
BaeGI GKGCMC 1 cut(s) 115
Bbv12I GWGCWC 1 cut(s) 115
BbvI GCAGC 2 cut(s) 64, 161
BccI CCATC 1 cut(s) 84
BciT130I CCWGG 1 cut(s) 201
BfaI CTAG 2 cut(s) 188, 251
BfmI CTRYAG 1 cut(s) 78
BisI GCNGC 2 cut(s) 78, 175
BlsI GCNGC 2 cut(s) 79, 176
Bme1390I CCNGG 1 cut(s) 201
Bme18I GGWCC 1 cut(s) 194
BmgT120I GGNCC 2 cut(s) 194, 224
BmiI GGNNCC 1 cut(s) 226
BmrFI CCNGG 1 cut(s) 201
BmsI GCATC 1 cut(s) 263
Bsa29I ATCGAT 1 cut(s) 55
Bsc4I CCNNNNNNNGG 1 cut(s) 30
BseBI CCWGG 1 cut(s) 201
BseCI ATCGAT 1 cut(s) 55
BseGI GGATG 1 cut(s) 278
BseLI CCNNNNNNNGG 1 cut(s) 30
BseSI GKGCMC 1 cut(s) 115
BseXI GCAGC 2 cut(s) 64, 161
BsgI GTGCAG 1 cut(s) 106
BshFI GGCC 2 cut(s) 34, 225
BshVI ATCGAT 1 cut(s) 55
BsiHKAI GWGCWC 1 cut(s) 115
BsiSI CCGG 1 cut(s) 192
BslI CCNNNNNNNGG 1 cut(s) 30
BsnI GGCC 2 cut(s) 34, 225
Bsp1286I GDGCHC 1 cut(s) 115
Bsp143I GATC 1 cut(s) 100
BspACI CCGC 1 cut(s) 172
BspANI GGCC 2 cut(s) 34, 225
BspDI ATCGAT 1 cut(s) 55
BspLI GGNNCC 1 cut(s) 226
BspMAI CTGCAG 1 cut(s) 82
BssMI GATC 1 cut(s) 100
Bst2UI CCWGG 1 cut(s) 201
Bst4CI ACNGT 1 cut(s) 182
Bst6I CTCTTC 1 cut(s) 24
BstC8I GCNNGC 2 cut(s) 142, 154
BstF5I GGATG 1 cut(s) 278
BstKTI GATC 1 cut(s) 103
BstMBI GATC 1 cut(s) 100
BstNI CCWGG 1 cut(s) 201
BstNSI RCATGY 3 cut(s) 156, 165, 222
BstSCI CCNGG 1 cut(s) 199
BstSFI CTRYAG 1 cut(s) 78
BstSLI GKGCMC 1 cut(s) 115
BstV1I GCAGC 2 cut(s) 64, 161
Bsu15I ATCGAT 1 cut(s) 55
BsuRI GGCC 2 cut(s) 34, 225
BsuTUI ATCGAT 1 cut(s) 55
BtsCI GGATG 1 cut(s) 278
BtsI GCAGTG 1 cut(s) 87
BtsIMutI CAGTG 1 cut(s) 87
Cac8I GCNNGC 2 cut(s) 142, 154
Cfr13I GGNCC 2 cut(s) 194, 224
ClaI ATCGAT 1 cut(s) 55
CseI GACGC 1 cut(s) 158
CviAII CATG 4 cut(s) 153, 157, 162, 219
CviJI RGCY 7 cut(s) 14, 34, 49, 77, 191, 204, 225
CviKI_1 RGCY 7 cut(s) 14, 34, 49, 77, 191, 204, 225
DpnI GATC 1 cut(s) 102
DpnII GATC 1 cut(s) 100
EaeI YGGCCR 1 cut(s) 32
Eam1104I CTCTTC 1 cut(s) 24
EarI CTCTTC 1 cut(s) 24
Eco32I GATATC 1 cut(s) 59
Eco47I GGWCC 1 cut(s) 194
EcoRII CCWGG 1 cut(s) 199
EcoRV GATATC 1 cut(s) 59
EcoT22I ATGCAT 1 cut(s) 158
FaeI CATG 4 cut(s) 156, 160, 165, 222
FaiI YATR 6 cut(s) 154, 158, 163, 220, 257, 262
FatI CATG 4 cut(s) 152, 156, 161, 218
Fnu4HI GCNGC 2 cut(s) 78, 175
Fsp4HI GCNGC 2 cut(s) 78, 175
FspBI CTAG 2 cut(s) 188, 251
GluI GCNGC 2 cut(s) 78, 175
HaeIII GGCC 2 cut(s) 34, 225
HapII CCGG 1 cut(s) 192
HgaI GACGC 1 cut(s) 158
Hin1II CATG 4 cut(s) 156, 160, 165, 222
HpaII CCGG 1 cut(s) 192
Hpy166II GTNNAC 1 cut(s) 113
Hpy188I TCNGA 2 cut(s) 105, 272
Hpy8I GTNNAC 1 cut(s) 113
HpyCH4III ACNGT 1 cut(s) 182
HpyCH4V TGCA 7 cut(s) 80, 87, 113, 119, 144, 156, 177
Hsp92II CATG 4 cut(s) 156, 160, 165, 222
Kzo9I GATC 1 cut(s) 100
LpnPI CCDG 6 cut(s) 24, 57, 186, 205, 213, 241
Lsp1109I GCAGC 2 cut(s) 64, 161
LweI GCATC 1 cut(s) 263
MaeI CTAG 2 cut(s) 188, 251
MaeIII GTNAC 1 cut(s) 167
MalI GATC 1 cut(s) 102
MboI GATC 1 cut(s) 100
MboII GAAGA 1 cut(s) 11
MhlI GDGCHC 1 cut(s) 115
MnlI CCTC 4 cut(s) 27, 60, 99, 207
Mph1103I ATGCAT 1 cut(s) 158
MseI TTAA 1 cut(s) 69
MspA1I CMGCKG 1 cut(s) 174
MspI CCGG 1 cut(s) 192
MspR9I CCNGG 1 cut(s) 201
MvaI CCWGG 1 cut(s) 201
NdeII GATC 1 cut(s) 100
NlaIII CATG 4 cut(s) 156, 160, 165, 222
NlaIV GGNNCC 1 cut(s) 226
NmuCI GTSAC 1 cut(s) 167
NsiI ATGCAT 1 cut(s) 158
NspI RCATGY 3 cut(s) 156, 165, 222
PaeI GCATGC 1 cut(s) 156
PciI ACATGT 2 cut(s) 161, 218
PkrI GCNGC 2 cut(s) 79, 176
PscI ACATGT 2 cut(s) 161, 218
Psp6I CCWGG 1 cut(s) 199
PspGI CCWGG 1 cut(s) 199
PspN4I GGNNCC 1 cut(s) 226
PspPI GGNCC 2 cut(s) 194, 224
PstI CTGCAG 1 cut(s) 82
SaqAI TTAA 1 cut(s) 69
SatI GCNGC 2 cut(s) 78, 175
Sau3AI GATC 1 cut(s) 100
Sau96I GGNCC 2 cut(s) 194, 224
ScrFI CCNGG 1 cut(s) 201
SduI GDGCHC 1 cut(s) 115
SetI ASST 3 cut(s) 79, 110, 199
SfaNI GCATC 1 cut(s) 263
SfcI CTRYAG 1 cut(s) 78
SinI GGWCC 1 cut(s) 194
SphI GCATGC 1 cut(s) 156
SsiI CCGC 1 cut(s) 172
SspMI CTAG 2 cut(s) 188, 251
StyD4I CCNGG 1 cut(s) 199
TaaI ACNGT 1 cut(s) 182
TaqI TCGA 2 cut(s) 55, 238
Tru1I TTAA 1 cut(s) 69
Tru9I TTAA 1 cut(s) 69
TscAI CASTG 1 cut(s) 87
TseFI GTSAC 1 cut(s) 167
TseI GCWGC 2 cut(s) 77, 174
Tsp45I GTSAC 1 cut(s) 167
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 87
VneI GTGCAC 1 cut(s) 111
VpaK11BI GGWCC 1 cut(s) 194
XceI RCATGY 3 cut(s) 156, 165, 222
XspI CTAG 2 cut(s) 188, 251
Zsp2I ATGCAT 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.