Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8502627.1

Orthogroup ID

OG0001842

Physical Location & Seq

Genomic Coordinates Forward (+)

1883 .. 2957

Gene Structure 1075 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8502627.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

atggctcttttggccttcctcctactcttggccaccgttctctttgctaccacaacggcttcatcttatgatctccatgaggaactcaagataaaggcggcttatgtccaaagccaagcaccaccaccacttccaatcgtcaaagcaccggctccaccacctctagtgaccaagccacccatagttcctgtgcctccagtggtgaggccacctacttatgctccaccgccaaaagtgatcaaggcaccccctccagcaccacctgtagctcctgtgcctccagtgaagccacctacttatgctccaccaccaaaagtggtcaaggcaccccctccagctccacctctacccaagccaccagttcctgcgcctccagtgaagcctcccacctatgctccaccacttcccccagtcaaatccaaaaaggattgcgttccattgtgtgaacaaaggtgcgctttgcattcgaggaagaggacgtgcatgagggcttgcatgacatgctgtgaccgctgcaaatgcgtgcccccgggaacttccggcaaccgggaaagatgcggcaagtgctacactgagatgaccacccacggcaacagatccaagtgcccttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GASA

Protein Analysis

203

Amino Acids

21.61

Weight (kDa)

9.7

Isoelectric Point (pI)

80.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001842)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g14940 FvH4_4g35060 FvH4_6g50260 FvH4_6g50260
malus_domestica	MD09G1038100.v1.1 MD13G1086500.v1.1 MD16G1086000.v1.1 MD17G1039200.v1.1 MD17G1039400.v1.1
prunus_persica	Prupe.1G260200_v2.0.a1 Prupe.1G260200_v2.0.a1 Prupe.3G279800_v2.0.a1 Prupe.5G178400_v2.0.a1
pyrus_communis	pycom13g07470 pycom17g03540
rosa_chinensis	RchiOBHm_Chr2g0170521 RchiOBHm_Chr4g0444681
rosa_laevigata	RLG00000002282 RLG00000005815 RLG00000021964
rosa_multiflora	Rmu_co8502627.1_g000001 Rmu_sc0000172.1_g000002 Rmu_sc0009395.1_g000002 Rmu_sc0009395.1_g000011 Rmu_sc0010307.1_g000007
rosa_roxburghii	Rroxscaffold_2G00081220 Rroxscaffold_5G00385120 Rroxscaffold_7G00211030
rosa_rugosa	Rorug02G0548900 Rorug02G0548900 Rorug02G0549700 Rorug02G0549700 Rorug04G0354300
rosa_samantha	Rh1BG166100 Rh1DG196900 Rh2AG620900 Rh2BG632000 Rh2CG601600 Rh2CG602200 Rh2DG644700 Rh4AG414400 Rh4BG426100 Rh4CG441000 Rh4DG422000
rosa_wichuraiana	Rw2G051480 Rw2G051530 Rw4G035600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	244, 325
AciI	CCGC	4 cut(s)	98, 227, 511, 558
AclWI	GGATC	1 cut(s)	591
AcoI	YGGCCR	1 cut(s)	30
AfiI	CCNNNNNNNGG	2 cut(s)	28, 546
AjiI	CACGTC	1 cut(s)	480
AluBI	AGCT	2 cut(s)	269, 338
AluI	AGCT	2 cut(s)	269, 338
AlwI	GGATC	1 cut(s)	591
AlwNI	CAGNNNCTG	1 cut(s)	365
Ama87I	CYCGRG	1 cut(s)	529
AoxI	GGCC	3 cut(s)	12, 30, 206
ApeKI	GCWGC	1 cut(s)	513
AspLEI	GCGC	2 cut(s)	370, 458
AsuC2I	CCSGG	3 cut(s)	530, 531, 548
AsuHPI	GGTGA	1 cut(s)	214
AvaI	CYCGRG	1 cut(s)	529
BaeGI	GKGCMC	2 cut(s)	528, 608
BalI	TGGCCA	1 cut(s)	32
BanI	GGYRCC	2 cut(s)	244, 325
BbvI	GCAGC	1 cut(s)	500
BceAI	ACGGC	2 cut(s)	72, 604
BclI	TGATCA	1 cut(s)	237
BcnI	CCSGG	3 cut(s)	530, 531, 548
BfaI	CTAG	1 cut(s)	164
BfmI	CTRYAG	1 cut(s)	264
BisI	GCNGC	3 cut(s)	99, 514, 559
BlsI	GCNGC	3 cut(s)	100, 515, 560
Bme1390I	CCNGG	3 cut(s)	530, 531, 548
BmeT110I	CYCGRG	1 cut(s)	529
BmgBI	CACGTC	1 cut(s)	480
BmiI	GGNNCC	3 cut(s)	153, 246, 327
BmrFI	CCNGG	3 cut(s)	530, 531, 548
BmrI	ACTGGG	1 cut(s)	404
BmsI	GCATC	1 cut(s)	545
BmuI	ACTGGG	1 cut(s)	404
BpmI	CTGGAG	5 cut(s)	180, 237, 264, 318, 357
BpuEI	CTTGAG	1 cut(s)	71
BpuMI	CCSGG	3 cut(s)	530, 531, 548
BsaJI	CCNNGG	3 cut(s)	528, 529, 586
BsaXI	ACNNNNNCTCC	6 cut(s)	205, 235, 286, 316, 379, 409
Bsc4I	CCNNNNNNNGG	2 cut(s)	28, 546
Bse118I	RCCGGY	1 cut(s)	148
Bse1I	ACTGG	5 cut(s)	197, 281, 359, 374, 410
BseDI	CCNNGG	3 cut(s)	528, 529, 586
BseLI	CCNNNNNNNGG	2 cut(s)	28, 546
BseMII	CTCAG	1 cut(s)	564
BseNI	ACTGG	5 cut(s)	197, 281, 359, 374, 410
BseSI	GKGCMC	2 cut(s)	528, 608
BseXI	GCAGC	1 cut(s)	500
BshFI	GGCC	3 cut(s)	14, 32, 208
BshNI	GGYRCC	2 cut(s)	244, 325
BsiHKCI	CYCGRG	1 cut(s)	529
BsiSI	CCGG	4 cut(s)	149, 530, 540, 547
BslI	CCNNNNNNNGG	2 cut(s)	28, 546
BsmI	GAATGC	1 cut(s)	463
BsnI	GGCC	3 cut(s)	14, 32, 208
BsoBI	CYCGRG	1 cut(s)	529
Bsp1286I	GDGCHC	2 cut(s)	528, 608
Bsp143I	GATC	3 cut(s)	70, 237, 596
BspACI	CCGC	4 cut(s)	98, 227, 511, 558
BspANI	GGCC	3 cut(s)	14, 32, 208
BspCNI	CTCAG	1 cut(s)	565
BspLI	GGNNCC	3 cut(s)	153, 246, 327
BspPI	GGATC	1 cut(s)	591
BspT107I	GGYRCC	2 cut(s)	244, 325
BsrFI	RCCGGY	1 cut(s)	148
BsrI	ACTGG	5 cut(s)	197, 281, 359, 374, 410
BssAI	RCCGGY	1 cut(s)	148
BssECI	CCNNGG	3 cut(s)	528, 529, 586
BssMI	GATC	3 cut(s)	70, 237, 596
Bst4CI	ACNGT	1 cut(s)	37
Bst6I	CTCTTC	1 cut(s)	467
BstAPI	GCANNNNNTGC	1 cut(s)	501
BstC8I	GCNNGC	2 cut(s)	493, 524
BstDEI	CTNAG	2 cut(s)	573, 609
BstDSI	CCRYGG	1 cut(s)	586
BstHHI	GCGC	2 cut(s)	370, 458
BstKTI	GATC	3 cut(s)	73, 240, 599
BstMBI	GATC	3 cut(s)	70, 237, 596
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 501, 510, 519, 564
BstNSI	RCATGY	1 cut(s)	504
BstSCI	CCNGG	3 cut(s)	528, 529, 546
BstSFI	CTRYAG	1 cut(s)	264
BstSLI	GKGCMC	2 cut(s)	528, 608
BstV1I	GCAGC	1 cut(s)	500
BstX2I	RGATCY	1 cut(s)	596
BstYI	RGATCY	1 cut(s)	596
BsuRI	GGCC	3 cut(s)	14, 32, 208
BtgI	CCRYGG	1 cut(s)	586
BtrI	CACGTC	1 cut(s)	480
BtsIMutI	CAGTG	4 cut(s)	204, 288, 381, 570
Cac8I	GCNNGC	2 cut(s)	493, 524
CaiI	CAGNNNCTG	1 cut(s)	365
CfoI	GCGC	2 cut(s)	370, 458
Cfr10I	RCCGGY	1 cut(s)	148
Cfr9I	CCCGGG	1 cut(s)	529
CviAII	CATG	4 cut(s)	77, 484, 496, 501
DdeI	CTNAG	2 cut(s)	573, 609
DpnI	GATC	3 cut(s)	72, 239, 598
DpnII	GATC	3 cut(s)	70, 237, 596
EaeI	YGGCCR	1 cut(s)	30
Eam1104I	CTCTTC	1 cut(s)	467
EarI	CTCTTC	1 cut(s)	467
Eco88I	CYCGRG	1 cut(s)	529
FaeI	CATG	4 cut(s)	80, 487, 499, 504
FalI	AAGNNNNNCTT	2 cut(s)	442, 474
FatI	CATG	4 cut(s)	76, 483, 495, 500
FbaI	TGATCA	1 cut(s)	237
Fnu4HI	GCNGC	3 cut(s)	99, 514, 559
Fsp4HI	GCNGC	3 cut(s)	99, 514, 559
FspBI	CTAG	1 cut(s)	164
GlaI	GCGC	2 cut(s)	369, 457
GluI	GCNGC	3 cut(s)	99, 514, 559
GsuI	CTGGAG	5 cut(s)	180, 237, 264, 318, 357
HaeIII	GGCC	3 cut(s)	14, 32, 208
HapII	CCGG	4 cut(s)	149, 530, 540, 547
HhaI	GCGC	2 cut(s)	370, 458
Hin1II	CATG	4 cut(s)	80, 487, 499, 504
Hin6I	GCGC	2 cut(s)	368, 456
HinP1I	GCGC	2 cut(s)	368, 456
HpaII	CCGG	4 cut(s)	149, 530, 540, 547
HphI	GGTGA	1 cut(s)	214
Hpy166II	GTNNAC	1 cut(s)	446
Hpy188III	TCNNGA	1 cut(s)	88
Hpy8I	GTNNAC	1 cut(s)	446
HpyAV	CCTTC	1 cut(s)	25
HpyCH4III	ACNGT	1 cut(s)	37
HpyCH4IV	ACGT	1 cut(s)	479
HpyCH4V	TGCA	4 cut(s)	463, 483, 495, 516
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 501, 510, 519, 564
HpyF3I	CTNAG	2 cut(s)	573, 609
HpySE526I	ACGT	1 cut(s)	479
Hsp92II	CATG	4 cut(s)	80, 487, 499, 504
HspAI	GCGC	2 cut(s)	368, 456
Ksp22I	TGATCA	1 cut(s)	237
Kzo9I	GATC	3 cut(s)	70, 237, 596
LmnI	GCTCC	6 cut(s)	157, 226, 274, 307, 343, 400
Lsp1109I	GCAGC	1 cut(s)	500
LweI	GCATC	1 cut(s)	545
MaeI	CTAG	1 cut(s)	164
MaeII	ACGT	1 cut(s)	479
MaeIII	GTNAC	2 cut(s)	166, 506
MalI	GATC	3 cut(s)	72, 239, 598
MboI	GATC	3 cut(s)	70, 237, 596
MboII	GAAGA	1 cut(s)	484
MflI	RGATCY	1 cut(s)	596
MhlI	GDGCHC	2 cut(s)	528, 608
MlsI	TGGCCA	1 cut(s)	32
MluNI	TGGCCA	1 cut(s)	32
Mox20I	TGGCCA	1 cut(s)	32
MscI	TGGCCA	1 cut(s)	32
MslI	CAYNNNNRTG	1 cut(s)	575
Msp20I	TGGCCA	1 cut(s)	32
MspA1I	CMGCKG	1 cut(s)	513
MspI	CCGG	4 cut(s)	149, 530, 540, 547
MspR9I	CCNGG	3 cut(s)	530, 531, 548
Mva1269I	GAATGC	1 cut(s)	463
MwoI	GCNNNNNNNGC	5 cut(s)	11, 501, 510, 519, 564
NciI	CCSGG	3 cut(s)	530, 531, 548
NdeII	GATC	3 cut(s)	70, 237, 596
NlaIII	CATG	4 cut(s)	80, 487, 499, 504
NlaIV	GGNNCC	3 cut(s)	153, 246, 327
NmuCI	GTSAC	2 cut(s)	166, 506
NspI	RCATGY	1 cut(s)	504
PctI	GAATGC	1 cut(s)	463
PkrI	GCNGC	3 cut(s)	100, 515, 560
PspN4I	GGNNCC	3 cut(s)	153, 246, 327
PstNI	CAGNNNCTG	1 cut(s)	365
PsuI	RGATCY	1 cut(s)	596
RseI	CAYNNNNRTG	1 cut(s)	575
SatI	GCNGC	3 cut(s)	99, 514, 559
Sau3AI	GATC	3 cut(s)	70, 237, 596
ScrFI	CCNGG	3 cut(s)	530, 531, 548
SduI	GDGCHC	2 cut(s)	528, 608
SfaNI	GCATC	1 cut(s)	545
SfcI	CTRYAG	1 cut(s)	264
SmaI	CCCGGG	1 cut(s)	531
SmiMI	CAYNNNNRTG	1 cut(s)	575
SmlI	CTYRAG	1 cut(s)	86
SmoI	CTYRAG	1 cut(s)	86
SsiI	CCGC	4 cut(s)	98, 227, 511, 558
SspMI	CTAG	1 cut(s)	164
StyD4I	CCNGG	3 cut(s)	528, 529, 546
TaaI	ACNGT	1 cut(s)	37
TaiI	ACGT	1 cut(s)	482
TaqI	TCGA	1 cut(s)	467
TauI	GCSGC	2 cut(s)	101, 561
TscAI	CASTG	4 cut(s)	204, 288, 381, 577
TseFI	GTSAC	2 cut(s)	166, 506
TseI	GCWGC	1 cut(s)	513
Tsp45I	GTSAC	2 cut(s)	166, 506
TspDTI	ATGAA	1 cut(s)	51
TspMI	CCCGGG	1 cut(s)	529
TspRI	CASTG	4 cut(s)	204, 288, 381, 577
XceI	RCATGY	1 cut(s)	504
XmaI	CCCGGG	1 cut(s)	529
XspI	CTAG	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.