RH2BG632000

Gibberellin-regulated protein 14-like

Design Primers CRISPR Design

Basic Information

Type: Sequence Only
Biological Identity
rosa_samantha
Unknown
OG0001842
Physical Location & Seq
Reverse (-)
0 .. 0
1 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG632000.1

Sequence Viewer

Length: 1572 bp
ATGGCTTTCAAAGCTGCGCTCCTGTTACTTGTCACTAGTCTTTTGGTGACTTCAACGGTTTCTGATCACCCATTGAAATGGGATATTGAAGACGGAGTGGGTGCAATTGTGGAGGGCATTACTGGTGGCGCATTGCGATATGGAGGACATGGTGATGATTATGCTGATGAACCTCCGCCGCCACCTCCACCCCAGAAAACACTGTCACCGGCTCCAGTGAAGTCACCATCACCGGCTCCGGCACCCCGCGCAAATGCACCGGCTCCGGCACCCCCCGCAAATGCACCGGCTCCGGCACCCCGCGCAAATGCACCGGCTCCGGCACCCCAAGCAAATGCACCGGCTCCAGCACCCGCAAGGAATGCACCGGCTCCCCCACCTCGAAGGAGTGCACCGGCTCCAGCACCCCGAGCAAATGCACCAGCTCCCCCACCCCCACCCCCGGTACCTGCTCCACCCCCGAATAATTCTTCAGACGACAACAACCCTTTGTTTGGCTTGATCCTTCTACCTGCTGCTCTCGCTGCCTCTGCTGCTGGCGCTGCCGGTGGCCTTGGTGGCGCTATCATATCTAGCTTCGAAGCTGCAGCTACCTCTGCAGCTGCCGTTGCAGCTGCAGATGTCCTCCAAGAAATTTTAAAACATAAGAAAAATGAAACACCTCCCGGTAAGCGTAATTGCACGTGCTCGTCAGGTGGGAAGGAACCTCCTCCAGTTAGGACCCCCCCTGCTCCACCATCTCCAATCAAACCTTCGACTCCACCAACTCAAGGAAGGTCACCACCTTCGCGACCTCTGAAAAGAACACCACCATCTCCCCCACCTTTAAAAAAGGCACCACCACCTCCACCACCACCACCGGAGGAAGTAGAGGGAGAGACACCAGCTCCCTCACCTCAAGATGACAACTTATTAGCTCCATCCCCTTTTATAGACGCACCCTTTCCTTCACCTCTGGCAAGCGCACATGCTCCTTCACCTCTGGCAAATGCACCCGCTCCTATTGGAGGTGGTGGCGGTGGTGGATCCAAATCCAAAGCTGGAGCCGGAGGGACTATCCTTGGCGGCGATATTGGAAAAACCATCTCATACATGGGTAGTCATAAGACCCGTGAAAATTTAAACACTAAGGTAACGCCTTATACGCGTCAGTGCAGGTGCCCAAAATCTTCTATGACCTCCCCCACTCCACCATCTCCAATCAAACCCTCGACTCCACCAACTCAAAGAAGGTCACCACCTTCGTCACCTTTGAAAAAGACACCACCACCTCCCCCAGCTTCAAAAAAGGCACCACCACCACCTCCACCAGCTCCAGCACCTCAAGATGACGATGATGTGGCACCAGCTCCTGCACCTCAAGAGGACAACACTCCTGTTGCAGATTGCATAACGTTGTGTGATCAGAGGTGTGCGTTTCATCAAAATAAGAAAGTGTGCACGGATGTATGCATGATTTGTTGTGATCGCTGCAACTGTGTTCCACCTGGACCTTCTGACCGCAACAAGGAAACATGTGGCCCCTGCTACACTCAAGTACTTATCCAAGAATACAAGTACAATTGCCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GASA

Protein Analysis

523

Amino Acids

52.97

Weight (kDa)

8.85

Isoelectric Point (pI)

90.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GASA PF02704 462 - 523 7.7e-14 Gibberellin regulated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1146
Acc36I ACCTGC 3 cut(s) 457, 520, 1146
Acc65I GGTACC 1 cut(s) 445
AccB1I GGYRCC 9 cut(s) 241, 268, 295, 322, 445, 835, 1158, 1291, 1342
AccBSI CCGCTC 1 cut(s) 998
AccII CGCG 4 cut(s) 249, 303, 790, 1147
AclI AACGTT 1 cut(s) 1394
AclWI GGATC 3 cut(s) 496, 1020, 1033
AcsI RAATTY 2 cut(s) 633, 1117
AcuI CTGAAG 1 cut(s) 456
AcvI CACGTG 1 cut(s) 684
AfaI GTAC 3 cut(s) 447, 1539, 1559
AfiI CCNNNNNNNGG 5 cut(s) 442, 494, 770, 1007, 1507
AflIII ACRYGT 2 cut(s) 1145, 1514
AgsI TTSAA 6 cut(s) 10, 54, 76, 89, 1255, 1284
AhlI ACTAGT 1 cut(s) 35
AjnI CCWGG 1 cut(s) 1486
AjuI GAANNNNNNNTTGG 2 cut(s) 736, 768
Alw21I GWGCWC 3 cut(s) 394, 689, 1442
Alw26I GTCTC 1 cut(s) 872
Alw44I GTGCAC 2 cut(s) 390, 1438
AlwI GGATC 3 cut(s) 496, 1020, 1033
AlwNI CAGNNNCTG 1 cut(s) 1352
Ama87I CYCGRG 1 cut(s) 408
AoxI GGCC 2 cut(s) 550, 1519
ApaLI GTGCAC 2 cut(s) 390, 1438
ApoI RAATTY 2 cut(s) 633, 1117
Asp718I GGTACC 1 cut(s) 445
AspLEI GCGC 7 cut(s) 19, 131, 251, 305, 542, 563, 965
AspS9I GGNCC 3 cut(s) 720, 1490, 1520
AsuC2I CCSGG 2 cut(s) 443, 666
AsuII TTCGAA 1 cut(s) 579
AvaI CYCGRG 1 cut(s) 408
AvaII GGWCC 2 cut(s) 720, 1490
BaeGI GKGCMC 3 cut(s) 394, 1163, 1442
BamHI GGATCC 1 cut(s) 1025
BanI GGYRCC 9 cut(s) 241, 268, 295, 322, 445, 835, 1158, 1291, 1342
BbrPI CACGTG 1 cut(s) 684
BbsI GAAGAC 1 cut(s) 96
Bbv12I GWGCWC 3 cut(s) 394, 689, 1442
BccI CCATC 6 cut(s) 235, 745, 820, 928, 1091, 1201
BceAI ACGGC 1 cut(s) 590
BciT130I CCWGG 1 cut(s) 1488
BclI TGATCA 2 cut(s) 64, 1402
BcnI CCSGG 2 cut(s) 443, 666
BcoDI GTCTC 1 cut(s) 872
BcuI ACTAGT 1 cut(s) 35
BfaI CTAG 2 cut(s) 36, 573
BfmI CTRYAG 3 cut(s) 585, 597, 615
BfoI RGCGCY 2 cut(s) 543, 564
BfuAI ACCTGC 3 cut(s) 457, 520, 1146
BglI GCCNNNNNGGC 1 cut(s) 558
BmcAI AGTACT 1 cut(s) 1539
Bme1390I CCNGG 3 cut(s) 443, 666, 1488
Bme18I GGWCC 2 cut(s) 720, 1490
BmeT110I CYCGRG 1 cut(s) 408
BmgT120I GGNCC 3 cut(s) 720, 1490, 1520
BmrFI CCNGG 3 cut(s) 443, 666, 1488
BpiI GAAGAC 1 cut(s) 96
BpmI CTGGAG 6 cut(s) 198, 330, 384, 696, 1062, 1299
Bpu14I TTCGAA 1 cut(s) 579
BpuEI CTTGAG 5 cut(s) 753, 882, 1308, 1344, 1518
BpuMI CCSGG 2 cut(s) 443, 666
BsaAI YACGTR 1 cut(s) 684
BsaBI GATNNNNATC 1 cut(s) 1030
BsaJI CCNNGG 3 cut(s) 441, 553, 1060
BsaWI WCCGGW 1 cut(s) 859
BsaXI ACNNNNNCTCC 2 cut(s) 871, 901
Bsc4I CCNNNNNNNGG 5 cut(s) 442, 494, 770, 1007, 1507
Bse118I RCCGGY 9 cut(s) 208, 232, 259, 286, 313, 340, 367, 394, 545
Bse1I ACTGG 3 cut(s) 127, 215, 713
Bse3DI GCAATG 1 cut(s) 131
Bse8I GATNNNNATC 1 cut(s) 1030
BseBI CCWGG 1 cut(s) 1488
BseDI CCNNGG 3 cut(s) 441, 553, 1060
BseGI GGATG 2 cut(s) 920, 1450
BseJI GATNNNNATC 1 cut(s) 1030
BseLI CCNNNNNNNGG 5 cut(s) 442, 494, 770, 1007, 1507
BseMI GCAATG 1 cut(s) 131
BseNI ACTGG 3 cut(s) 127, 215, 713
BseRI GAGGAG 1 cut(s) 699
BseSI GKGCMC 3 cut(s) 394, 1163, 1442
BseYI CCCAGC 1 cut(s) 1276
BsgI GTGCAG 2 cut(s) 1174, 1338
Bsh1236I CGCG 4 cut(s) 249, 303, 790, 1147
BshFI GGCC 2 cut(s) 552, 1521
BshNI GGYRCC 9 cut(s) 241, 268, 295, 322, 445, 835, 1158, 1291, 1342
BsiHKAI GWGCWC 3 cut(s) 394, 689, 1442
BsiHKCI CYCGRG 1 cut(s) 408
BslFI GGGAC 1 cut(s) 1066
BslI CCNNNNNNNGG 5 cut(s) 442, 494, 770, 1007, 1507
BsmAI GTCTC 1 cut(s) 872
BsmFI GGGAC 1 cut(s) 1066
BsmI GAATGC 1 cut(s) 367
BsnI GGCC 2 cut(s) 552, 1521
BsoBI CYCGRG 1 cut(s) 408
Bsp119I TTCGAA 1 cut(s) 579
Bsp1286I GDGCHC 4 cut(s) 394, 689, 1163, 1442
Bsp143I GATC 5 cut(s) 64, 501, 1025, 1402, 1465
Bsp68I TCGCGA 1 cut(s) 790
BspANI GGCC 2 cut(s) 552, 1521
BspFNI CGCG 4 cut(s) 249, 303, 790, 1147
BspMAI CTGCAG 3 cut(s) 589, 601, 619
BspMI ACCTGC 3 cut(s) 457, 520, 1146
BspPI GGATC 3 cut(s) 496, 1020, 1033
BspT104I TTCGAA 1 cut(s) 579
BspT107I GGYRCC 9 cut(s) 241, 268, 295, 322, 445, 835, 1158, 1291, 1342
BsrBI CCGCTC 1 cut(s) 998
BsrDI GCAATG 1 cut(s) 131
BsrFI RCCGGY 9 cut(s) 208, 232, 259, 286, 313, 340, 367, 394, 545
BsrI ACTGG 3 cut(s) 127, 215, 713
BssAI RCCGGY 9 cut(s) 208, 232, 259, 286, 313, 340, 367, 394, 545
BssECI CCNNGG 3 cut(s) 441, 553, 1060
BssMI GATC 5 cut(s) 64, 501, 1025, 1402, 1465
BssT1I CCWWGG 2 cut(s) 553, 1060
Bst2UI CCWGG 1 cut(s) 1488
Bst4CI ACNGT 3 cut(s) 58, 204, 1478
BstAPI GCANNNNNTGC 1 cut(s) 362
BstBAI YACGTR 1 cut(s) 684
BstBI TTCGAA 1 cut(s) 579
BstC8I GCNNGC 2 cut(s) 538, 961
BstDEI CTNAG 1 cut(s) 1128
BstEII GGTNACC 2 cut(s) 777, 1233
BstENI CCTNNNNNAGG 1 cut(s) 1005
BstF5I GGATG 2 cut(s) 920, 1450
BstFNI CGCG 4 cut(s) 249, 303, 790, 1147
BstH2I RGCGCY 2 cut(s) 543, 564
BstHHI GCGC 7 cut(s) 19, 131, 251, 305, 542, 563, 965
BstKTI GATC 5 cut(s) 67, 504, 1028, 1405, 1468
BstMAI GTCTC 1 cut(s) 872
BstMBI GATC 5 cut(s) 64, 501, 1025, 1402, 1465
BstNI CCWGG 1 cut(s) 1488
BstNSI RCATGY 2 cut(s) 971, 1518
BstPI GGTNACC 2 cut(s) 777, 1233
BstSCI CCNGG 3 cut(s) 441, 664, 1486
BstSFI CTRYAG 3 cut(s) 585, 597, 615
BstSLI GKGCMC 3 cut(s) 394, 1163, 1442
BstUI CGCG 4 cut(s) 249, 303, 790, 1147
BstV2I GAAGAC 1 cut(s) 96
BstX2I RGATCY 1 cut(s) 1025
BstXI CCANNNNNNTGG 1 cut(s) 78
BstYI RGATCY 1 cut(s) 1025
BsuRI GGCC 2 cut(s) 552, 1521
BtsCI GGATG 2 cut(s) 920, 1450
BtsIMutI CAGTG 3 cut(s) 200, 222, 1157
BtuMI TCGCGA 1 cut(s) 790
BveI ACCTGC 3 cut(s) 457, 520, 1146
Cac8I GCNNGC 2 cut(s) 538, 961
CaiI CAGNNNCTG 1 cut(s) 1352
CfoI GCGC 7 cut(s) 19, 131, 251, 305, 542, 563, 965
Cfr10I RCCGGY 9 cut(s) 208, 232, 259, 286, 313, 340, 367, 394, 545
Cfr13I GGNCC 3 cut(s) 720, 1490, 1520
CseI GACGC 2 cut(s) 944, 1136
Csp6I GTAC 3 cut(s) 446, 1538, 1558
CviAII CATG 5 cut(s) 149, 968, 1093, 1453, 1515
CviQI GTAC 3 cut(s) 446, 1538, 1558
DdeI CTNAG 1 cut(s) 1128
DpnI GATC 5 cut(s) 66, 503, 1027, 1404, 1467
DpnII GATC 5 cut(s) 64, 501, 1025, 1402, 1465
DraI TTTAAA 3 cut(s) 639, 828, 1122
EciI GGCGGA 1 cut(s) 165
Eco130I CCWWGG 2 cut(s) 553, 1060
Eco47I GGWCC 2 cut(s) 720, 1490
Eco57I CTGAAG 1 cut(s) 456
Eco72I CACGTG 1 cut(s) 684
Eco88I CYCGRG 1 cut(s) 408
Eco91I GGTNACC 2 cut(s) 777, 1233
EcoNI CCTNNNNNAGG 1 cut(s) 1005
EcoO109I RGGNCCY 1 cut(s) 720
EcoO65I GGTNACC 2 cut(s) 777, 1233
EcoRII CCWGG 1 cut(s) 1486
EcoT14I CCWWGG 2 cut(s) 553, 1060
EcoT22I ATGCAT 1 cut(s) 1454
ErhI CCWWGG 2 cut(s) 553, 1060
FaeI CATG 5 cut(s) 152, 971, 1096, 1456, 1518
FaqI GGGAC 1 cut(s) 1066
FatI CATG 5 cut(s) 148, 967, 1092, 1452, 1514
FauI CCCGC 5 cut(s) 254, 283, 308, 361, 1003
FbaI TGATCA 2 cut(s) 64, 1402
FokI GGATG 2 cut(s) 907, 1457
FspBI CTAG 2 cut(s) 36, 573
GlaI GCGC 7 cut(s) 18, 130, 250, 304, 541, 562, 964
GsaI CCCAGC 1 cut(s) 1280
GsuI CTGGAG 6 cut(s) 198, 330, 384, 696, 1062, 1299
HaeII RGCGCY 2 cut(s) 543, 564
HaeIII GGCC 2 cut(s) 552, 1521
HgaI GACGC 2 cut(s) 944, 1136
HhaI GCGC 7 cut(s) 19, 131, 251, 305, 542, 563, 965
Hin1II CATG 5 cut(s) 152, 971, 1096, 1456, 1518
Hin6I GCGC 7 cut(s) 17, 129, 249, 303, 540, 561, 963
HinP1I GCGC 7 cut(s) 17, 129, 249, 303, 540, 561, 963
HinfI GANTC 2 cut(s) 757, 1213
Hpy166II GTNNAC 2 cut(s) 392, 1440
Hpy188I TCNGA 5 cut(s) 64, 475, 798, 1407, 1498
Hpy188III TCNNGA 4 cut(s) 789, 899, 1325, 1361
Hpy8I GTNNAC 2 cut(s) 392, 1440
HpyCH4III ACNGT 3 cut(s) 58, 204, 1478
HpyCH4IV ACGT 2 cut(s) 683, 1394
HpyF3I CTNAG 1 cut(s) 1128
HpySE526I ACGT 2 cut(s) 683, 1394
Hsp92II CATG 5 cut(s) 152, 971, 1096, 1456, 1518
HspAI GCGC 7 cut(s) 17, 129, 249, 303, 540, 561, 963
KpnI GGTACC 1 cut(s) 449
Ksp22I TGATCA 2 cut(s) 64, 1402
Kzo9I GATC 5 cut(s) 64, 501, 1025, 1402, 1465
MaeI CTAG 2 cut(s) 36, 573
MaeII ACGT 2 cut(s) 683, 1394
MaeIII GTNAC 9 cut(s) 24, 31, 46, 204, 222, 777, 1132, 1233, 1245
MalI GATC 5 cut(s) 66, 503, 1027, 1404, 1467
MbiI CCGCTC 1 cut(s) 998
MboI GATC 5 cut(s) 64, 501, 1025, 1402, 1465
MboII GAAGA 3 cut(s) 101, 462, 1161
MfeI CAATTG 2 cut(s) 105, 1561
MflI RGATCY 1 cut(s) 1025
MhlI GDGCHC 4 cut(s) 394, 689, 1163, 1442
MluCI AATT 6 cut(s) 105, 466, 633, 676, 1117, 1561
MluI ACGCGT 1 cut(s) 1145
MlyI GAGTC 2 cut(s) 751, 1207
Mph1103I ATGCAT 1 cut(s) 1454
MseI TTAA 4 cut(s) 638, 827, 1121, 1570
MslI CAYNNNNRTG 2 cut(s) 76, 153
MspA1I CMGCKG 2 cut(s) 602, 614
MspR9I CCNGG 3 cut(s) 443, 666, 1488
MunI CAATTG 2 cut(s) 105, 1561
Mva1269I GAATGC 1 cut(s) 367
MvaI CCWGG 1 cut(s) 1488
MvnI CGCG 4 cut(s) 249, 303, 790, 1147
NciI CCSGG 2 cut(s) 443, 666
NdeII GATC 5 cut(s) 64, 501, 1025, 1402, 1465
NlaIII CATG 5 cut(s) 152, 971, 1096, 1456, 1518
NmuCI GTSAC 7 cut(s) 31, 46, 204, 222, 777, 1233, 1245
NruI TCGCGA 1 cut(s) 790
NsiI ATGCAT 1 cut(s) 1454
NspI RCATGY 2 cut(s) 971, 1518
NspV TTCGAA 1 cut(s) 579
PaqCI CACCTGC 1 cut(s) 1146
PciI ACATGT 1 cut(s) 1514
PctI GAATGC 1 cut(s) 367
PleI GAGTC 2 cut(s) 751, 1207
PmaCI CACGTG 1 cut(s) 684
PmlI CACGTG 1 cut(s) 684
PpsI GAGTC 2 cut(s) 751, 1207
Ppu21I YACGTR 1 cut(s) 684
PpuMI RGGWCCY 1 cut(s) 720
PscI ACATGT 1 cut(s) 1514
Psp1406I AACGTT 1 cut(s) 1394
Psp5II RGGWCCY 1 cut(s) 720
Psp6I CCWGG 1 cut(s) 1486
PspCI CACGTG 1 cut(s) 684
PspEI GGTNACC 2 cut(s) 777, 1233
PspFI CCCAGC 1 cut(s) 1276
PspGI CCWGG 1 cut(s) 1486
PspPI GGNCC 3 cut(s) 720, 1490, 1520
PspPPI RGGWCCY 1 cut(s) 720
PstI CTGCAG 3 cut(s) 589, 601, 619
PstNI CAGNNNCTG 1 cut(s) 1352
PsuI RGATCY 1 cut(s) 1025
PvuII CAGCTG 2 cut(s) 602, 614
RruI TCGCGA 1 cut(s) 790
RsaI GTAC 3 cut(s) 447, 1539, 1559
RsaNI GTAC 3 cut(s) 446, 1538, 1558
RseI CAYNNNNRTG 2 cut(s) 76, 153
SaqAI TTAA 4 cut(s) 638, 827, 1121, 1570
Sau3AI GATC 5 cut(s) 64, 501, 1025, 1402, 1465
Sau96I GGNCC 3 cut(s) 720, 1490, 1520
ScaI AGTACT 1 cut(s) 1539
SchI GAGTC 2 cut(s) 751, 1207
ScrFI CCNGG 3 cut(s) 443, 666, 1488
SduI GDGCHC 4 cut(s) 394, 689, 1163, 1442
SfcI CTRYAG 3 cut(s) 585, 597, 615
SfuI TTCGAA 1 cut(s) 579
SinI GGWCC 2 cut(s) 720, 1490
SmiMI CAYNNNNRTG 2 cut(s) 76, 153
SmlI CTYRAG 5 cut(s) 768, 897, 1323, 1359, 1533
SmoI CTYRAG 5 cut(s) 768, 897, 1323, 1359, 1533
SpeI ACTAGT 1 cut(s) 35
Sse9I AATT 6 cut(s) 105, 466, 633, 676, 1117, 1561
SspMI CTAG 2 cut(s) 36, 573
StyD4I CCNGG 3 cut(s) 441, 664, 1486
StyI CCWWGG 2 cut(s) 553, 1060
TaaI ACNGT 3 cut(s) 58, 204, 1478
TaiI ACGT 2 cut(s) 686, 1397
TaqI TCGA 4 cut(s) 382, 579, 755, 1211
TasI AATT 6 cut(s) 105, 466, 633, 676, 1117, 1561
TatI WGTACW 2 cut(s) 1537, 1557
TauI GCSGC 2 cut(s) 181, 1068
Tru1I TTAA 4 cut(s) 638, 827, 1121, 1570
Tru9I TTAA 4 cut(s) 638, 827, 1121, 1570
TscAI CASTG 3 cut(s) 207, 222, 1157
TseFI GTSAC 7 cut(s) 31, 46, 204, 222, 777, 1233, 1245
Tsp45I GTSAC 7 cut(s) 31, 46, 204, 222, 777, 1233, 1245
TspDTI ATGAA 3 cut(s) 183, 669, 1409
TspGWI ACGGA 2 cut(s) 108, 1457
TspRI CASTG 3 cut(s) 207, 222, 1157
VneI GTGCAC 2 cut(s) 390, 1438
VpaK11BI GGWCC 2 cut(s) 720, 1490
XagI CCTNNNNNAGG 1 cut(s) 1005
XapI RAATTY 2 cut(s) 633, 1117
XceI RCATGY 2 cut(s) 971, 1518
XcmI CCANNNNNNNNNTGG 1 cut(s) 1090
XspI CTAG 2 cut(s) 36, 573
ZrmI AGTACT 1 cut(s) 1539
Zsp2I ATGCAT 1 cut(s) 1454
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.